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Volumn 87, Issue 7, 2013, Pages 3952-3965

Frequent and variable cytotoxic-T-lymphocyte escape-associated fitness costs in the human immunodeficiency virus type 1 subtype B gag proteins

Author keywords

[No Author keywords available]

Indexed keywords

GAG PROTEIN; HLA ANTIGEN CLASS 1;

EID: 84875527661     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.03233-12     Document Type: Article
Times cited : (44)

References (74)
  • 1
    • 0028041344 scopus 로고
    • Virus-specific CD8+ cytotoxic T-lymphocyte activity associated with control of viremia in primary human immunodeficiency virus type 1 infection
    • Borrow P, Lewicki H, Hahn BH, Shaw GM, Oldstone MB. 1994. Virus-specific CD8+ cytotoxic T-lymphocyte activity associated with control of viremia in primary human immunodeficiency virus type 1 infection. J. Virol. 68:6103-6110.
    • (1994) J. Virol. , vol.68 , pp. 6103-6110
    • Borrow, P.1    Lewicki, H.2    Hahn, B.H.3    Shaw, G.M.4    Oldstone, M.B.5
  • 2
    • 0028337166 scopus 로고
    • Temporal association of cellular immune responses with the initial control of viremia in primary human immunodeficiency virus type 1 syndrome
    • Koup RA, Safrit JT, Cao Y, Andrews CA, McLeod G, Borkowsky W, Farthing C, Ho DD. 1994. Temporal association of cellular immune responses with the initial control of viremia in primary human immunodeficiency virus type 1 syndrome. J. Virol. 68:4650-4655.
    • (1994) J. Virol. , vol.68 , pp. 4650-4655
    • Koup, R.A.1    Safrit, J.T.2    Cao, Y.3    Andrews, C.A.4    McLeod, G.5    Borkowsky, W.6    Farthing, C.7    Ho, D.D.8
  • 3
    • 0027979442 scopus 로고
    • Characterization of human immunodeficiency virus type 1-specific cytotoxic T lymphocyte clones isolated during acute seroconversion: recognition of autologous virus sequences within a conserved immunodominant epitope
    • Safrit JT, Andrews CA, Zhu T, Ho DD, Koup RA. 1994. Characterization of human immunodeficiency virus type 1-specific cytotoxic T lymphocyte clones isolated during acute seroconversion: recognition of autologous virus sequences within a conserved immunodominant epitope. J. Exp. Med. 179:463-472.
    • (1994) J. Exp. Med. , vol.179 , pp. 463-472
    • Safrit, J.T.1    Andrews, C.A.2    Zhu, T.3    Ho, D.D.4    Koup, R.A.5
  • 8
    • 34249986747 scopus 로고    scopus 로고
    • Prognostic value of HIV-1 RNA, CD4 cell count, and CD4 cell count slope for progression to AIDS and death in untreated HIV-1 infection
    • Mellors JW, Margolick JB, Phair JP, Rinaldo CR, Detels R, Jacobson LP, Munoz A. 2007. Prognostic value of HIV-1 RNA, CD4 cell count, and CD4 cell count slope for progression to AIDS and death in untreated HIV-1 infection. JAMA 297:2349-2350.
    • (2007) JAMA , vol.297 , pp. 2349-2350
    • Mellors, J.W.1    Margolick, J.B.2    Phair, J.P.3    Rinaldo, C.R.4    Detels, R.5    Jacobson, L.P.6    Munoz, A.7
  • 13
    • 0038581912 scopus 로고    scopus 로고
    • The influence of HLA genotype on AIDS
    • Carrington M, O'Brien SJ. 2003. The influence of HLA genotype on AIDS. Annu. Rev. Med. 54:535-551.
    • (2003) Annu. Rev. Med. , vol.54 , pp. 535-551
    • Carrington, M.1    O'Brien, S.J.2
  • 16
    • 84879317044 scopus 로고    scopus 로고
    • Vaccine design for CD8 T lymphocyte responses
    • doi:10.1101 /cshperspect.a007252
    • Koup RA, Douek DC. 2011. Vaccine design for CD8 T lymphocyte responses. Cold Spring Harbor Perspect. Med. 1:a007252. doi:10.1101 /cshperspect.a007252.
    • (2011) Cold Spring Harbor Perspect. Med. , vol.1
    • Koup, R.A.1    Douek, D.C.2
  • 21
    • 3543113110 scopus 로고    scopus 로고
    • Immune escape precedes breakthrough human immunodeficiency virus type 1 viremia and broadening of the cytotoxic T-lymphocyte response in an HLA-B27-positive long-termnonprogressing child
    • Feeney ME, Tang Y, Roosevelt KA, Leslie AJ, McIntosh K, Karthas N, Walker BD, Goulder PJ. 2004. Immune escape precedes breakthrough human immunodeficiency virus type 1 viremia and broadening of the cytotoxic T-lymphocyte response in an HLA-B27-positive long-termnonprogressing child. J. Virol. 78:8927-8930.
    • (2004) J. Virol. , vol.78 , pp. 8927-8930
    • Feeney, M.E.1    Tang, Y.2    Roosevelt, K.A.3    Leslie, A.J.4    McIntosh, K.5    Karthas, N.6    Walker, B.D.7    Goulder, P.J.8
  • 30
    • 0030869489 scopus 로고    scopus 로고
    • Antagonism of cytotoxic T lymphocyte-mediated lysis by natural HIV-1 altered peptide ligands requires simultaneous presentation of agonist and antagonist peptides
    • Sewell AK, Harcourt GC, Goulder PJ, Price DA, Phillips RE. 1997. Antagonism of cytotoxic T lymphocyte-mediated lysis by natural HIV-1 altered peptide ligands requires simultaneous presentation of agonist and antagonist peptides. Eur. J. Immunol. 27:2323-2329.
    • (1997) Eur. J. Immunol. , vol.27 , pp. 2323-2329
    • Sewell, A.K.1    Harcourt, G.C.2    Goulder, P.J.3    Price, D.A.4    Phillips, R.E.5
  • 35
    • 62749167015 scopus 로고    scopus 로고
    • Reduced viral replication capacity of human immunodeficiency virus type 1 subtype C caused by cytotoxic-T-lymphocyte escape mutations in HLA-B57 epitopes of capsid protein
    • Boutwell CL, Rowley CF, Essex M. 2009. Reduced viral replication capacity of human immunodeficiency virus type 1 subtype C caused by cytotoxic-T-lymphocyte escape mutations in HLA-B57 epitopes of capsid protein. J. Virol. 83:2460-2468.
    • (2009) J. Virol. , vol.83 , pp. 2460-2468
    • Boutwell, C.L.1    Rowley, C.F.2    Essex, M.3
  • 36
    • 58149517692 scopus 로고    scopus 로고
    • Functional consequences of human immunodeficiency virus escape from an HLA-B*13-restricted CD8+T-cell epitope in p1 Gag protein
    • Prado JG, Honeyborne I, Brierley I, Puertas MC, Martinez-Picado J, Goulder PJ. 2009. Functional consequences of human immunodeficiency virus escape from an HLA-B*13-restricted CD8+T-cell epitope in p1 Gag protein. J. Virol. 83:1018-1025.
    • (2009) J. Virol. , vol.83 , pp. 1018-1025
    • Prado, J.G.1    Honeyborne, I.2    Brierley, I.3    Puertas, M.C.4    Martinez-Picado, J.5    Goulder, P.J.6
  • 44
    • 33845756711 scopus 로고    scopus 로고
    • Rapid reversion of sequence polymorphisms dominates early human immunodeficiency virus type 1 evolution
    • Li B, Gladden AD, Altfeld M, Kaldor JM, Cooper DA, Kelleher AD, Allen TM. 2007. Rapid reversion of sequence polymorphisms dominates early human immunodeficiency virus type 1 evolution. J. Virol. 81:193-201.
    • (2007) J. Virol. , vol.81 , pp. 193-201
    • Li, B.1    Gladden, A.D.2    Altfeld, M.3    Kaldor, J.M.4    Cooper, D.A.5    Kelleher, A.D.6    Allen, T.M.7
  • 49
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 50
    • 33749009745 scopus 로고    scopus 로고
    • Implications for viral capsid assembly from crystal structures of HIV-1 Gag(1-278) and CA(N)(133-278)
    • Kelly BN, Howard BR, Wang H, Robinson H, Sundquist WI, Hill CP. 2006. Implications for viral capsid assembly from crystal structures of HIV-1 Gag(1-278) and CA(N)(133-278). Biochemistry 45:11257-11266.
    • (2006) Biochemistry , vol.45 , pp. 11257-11266
    • Kelly, B.N.1    Howard, B.R.2    Wang, H.3    Robinson, H.4    Sundquist, W.I.5    Hill, C.P.6
  • 51
    • 0036291145 scopus 로고    scopus 로고
    • Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations
    • Guerois R, Nielsen JE, Serrano L. 2002. Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. J. Mol. Biol. 320:369-387.
    • (2002) J. Mol. Biol. , vol.320 , pp. 369-387
    • Guerois, R.1    Nielsen, J.E.2    Serrano, L.3
  • 52
    • 0037165969 scopus 로고    scopus 로고
    • Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level
    • Moore CB, John M, James IR, Christiansen FT, Witt CS, Mallal SA. 2002. Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level. Science 296:1439-1443.
    • (2002) Science , vol.296 , pp. 1439-1443
    • Moore, C.B.1    John, M.2    James, I.R.3    Christiansen, F.T.4    Witt, C.S.5    Mallal, S.A.6
  • 53
    • 33846817305 scopus 로고    scopus 로고
    • Identification of HLA class I-associated amino acid polymorphisms in the HIV-1C proteome
    • Boutwell CL, Essex M. 2007. Identification of HLA class I-associated amino acid polymorphisms in the HIV-1C proteome. AIDS Res. Hum. Retroviruses 23:165-174.
    • (2007) AIDS Res. Hum. Retroviruses , vol.23 , pp. 165-174
    • Boutwell, C.L.1    Essex, M.2
  • 55
    • 79951945491 scopus 로고    scopus 로고
    • How to optimally define optimal cytotoxic T lymphocyte epitopes in HIV infection?
    • In Yusim K, Korber B, Brander C, Haynes B, Koup R, Moore JP, Walker B, Watkins D (ed), HIV molecular immunology 2009, LA-UR 09-05941. Los Alamos National Laboratory, Theoretical Biology and Biophysics, Los Alamos, NM
    • Llano A, Frahm N, Brander C. 2009. How to optimally define optimal cytotoxic T lymphocyte epitopes in HIV infection?, p I-3-5. In Yusim K, Korber B, Brander C, Haynes B, Koup R, Moore JP, Walker B, Watkins D (ed), HIV molecular immunology 2009, LA-UR 09-05941. Los Alamos National Laboratory, Theoretical Biology and Biophysics, Los Alamos, NM.
    • (2009)
    • Llano, A.1    Frahm, N.2    Brander, C.3
  • 59
    • 0035330599 scopus 로고    scopus 로고
    • A novel recombinant marker virus assay for comparing the relative fitness of HIV-1 reverse transcriptase variants
    • Lu J, Kuritzkes DR. 2001. A novel recombinant marker virus assay for comparing the relative fitness of HIV-1 reverse transcriptase variants. J. Acquir. Immune Defic. Syndr. 27:7-13.
    • (2001) J. Acquir. Immune Defic. Syndr. , vol.27 , pp. 7-13
    • Lu, J.1    Kuritzkes, D.R.2
  • 61
    • 0035141001 scopus 로고    scopus 로고
    • Implications of antiretroviral resistance on viral fitness
    • Nijhuis M, Deeks S, Boucher C. 2001. Implications of antiretroviral resistance on viral fitness. Curr. Opin. Infect. Dis. 14:23-28.
    • (2001) Curr. Opin. Infect. Dis. , vol.14 , pp. 23-28
    • Nijhuis, M.1    Deeks, S.2    Boucher, C.3
  • 62
    • 0030512725 scopus 로고    scopus 로고
    • Effectiveness of 3TC in HIV clinical trials may be due in part to the M184V substitution in 3TC-resistant HIV-1 reverse transcriptase
    • Wainberg MA, Hsu M, Gu Z, Borkow G, Parniak MA. 1996. Effectiveness of 3TC in HIV clinical trials may be due in part to the M184V substitution in 3TC-resistant HIV-1 reverse transcriptase. AIDS 10(Suppl 5): S3-S10.
    • (1996) AIDS , vol.10 , Issue.5
    • Wainberg, M.A.1    Hsu, M.2    Gu, Z.3    Borkow, G.4    Parniak, M.A.5
  • 65
    • 0029966361 scopus 로고    scopus 로고
    • Crystal structures of the trimeric human immunodeficiency virus type 1 matrix protein: implications for membrane association and assembly
    • U. S. A.
    • Hill CP, Worthylake D, Bancroft DP, Christensen AM, Sundquist WI. 1996. Crystal structures of the trimeric human immunodeficiency virus type 1 matrix protein: implications for membrane association and assembly. Proc. Natl. Acad. Sci. U. S. A. 93:3099-3104.
    • (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 3099-3104
    • Hill, C.P.1    Worthylake, D.2    Bancroft, D.P.3    Christensen, A.M.4    Sundquist, W.I.5
  • 66
    • 0034636984 scopus 로고    scopus 로고
    • NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition
    • Amarasinghe GK, De Guzman RN, Turner RB, Chancellor KJ, Wu ZR, Summers MF. 2000. NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition. J. Mol. Biol. 301:491-511.
    • (2000) J. Mol. Biol. , vol.301 , pp. 491-511
    • Amarasinghe, G.K.1    De Guzman, R.N.2    Turner, R.B.3    Chancellor, K.J.4    Wu, Z.R.5    Summers, M.F.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.