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Volumn 37, Issue 6, 2014, Pages 457-466

Label-free quantitative proteomics and N-terminal analysis of human metastatic lung cancer cells

Author keywords

Label free quantitative analysis; Metastasis; N terminal analysis; Non small cell lung cancer

Indexed keywords

PROTEOME; TUMOR PROTEIN; PEPTIDE; TUMOR MARKER;

EID: 84903898923     PISSN: 10168478     EISSN: 02191032     Source Type: Journal    
DOI: 10.14348/molcells.2014.0035     Document Type: Article
Times cited : (11)

References (52)
  • 3
    • 84862994718 scopus 로고    scopus 로고
    • Comparative label-free LC-MS/MS analysis of colorectal adenocarcinoma and metastatic cells treated with 5-fluorouracil
    • Bauer, K.M., Lambert, P.A., and Hummon, A.B. (2012). Comparative label-free LC-MS/MS analysis of colorectal adenocarcinoma and metastatic cells treated with 5-fluorouracil. Proteomics 12, 1928-1937.
    • (2012) Proteomics , vol.12 , pp. 1928-1937
    • Bauer, K.M.1    Lambert, P.A.2    Hummon, A.B.3
  • 5
    • 0013958696 scopus 로고
    • Location of disulphide bridges by diagonal paper electrophoresis. The disulphide bridges of bovine chymotrypsinogen A
    • Brown, J.R., and Hartley, B.S. (1966). Location of disulphide bridges by diagonal paper electrophoresis. The disulphide bridges of bovine chymotrypsinogen A. Biochem. J. 101, 214-228.
    • (1966) Biochem. J. , vol.101 , pp. 214-228
    • Brown, J.R.1    Hartley, B.S.2
  • 6
    • 33645524772 scopus 로고    scopus 로고
    • Lamin A/C expression is a marker of mouse and human embryonic stem cell differentiation
    • Constantinescu, D., Gray, H.L., Sammak, P.J., Schatten, G.P., and Csoka, A.B. (2006). Lamin A/C expression is a marker of mouse and human embryonic stem cell differentiation. Stem Cells 24, 177-185.
    • (2006) Stem Cells , vol.24 , pp. 177-185
    • Constantinescu, D.1    Gray, H.L.2    Sammak, P.J.3    Schatten, G.P.4    Csoka, A.B.5
  • 7
    • 0242363670 scopus 로고    scopus 로고
    • Molecular Pathways of Neurodegeneration in Parkinson's Disease
    • DOI 10.1126/science.1087753
    • Dawson, T.M., and Dawson, V.L. (2003). Molecular pathways of neurodegeneration in Parkinson's disease. Science 302, 819-822. (Pubitemid 37339614)
    • (2003) Science , vol.302 , Issue.5646 , pp. 819-822
    • Dawson, T.M.1    Dawson, V.L.2
  • 8
    • 33645813378 scopus 로고    scopus 로고
    • Mass spectrometry and protein analysis
    • Domon, B., and Aebersold, R. (2006). Mass spectrometry and protein analysis. Science 312, 212-217.
    • (2006) Science , vol.312 , pp. 212-217
    • Domon, B.1    Aebersold, R.2
  • 11
    • 84875931748 scopus 로고    scopus 로고
    • Proteogenomic analysis of human colon carcinoma cell lines LIM1215, LIM1899, and LIM2405
    • Fanayan, S., Smith, J.T., Lee, L.Y., Yan, F., Snyder, M., Hancock, W.S., and Nice, E. (2013). Proteogenomic analysis of human colon carcinoma cell lines LIM1215, LIM1899, and LIM2405. J. Proteome Res. 12, 1732-1742.
    • (2013) J. Proteome Res. , vol.12 , pp. 1732-1742
    • Fanayan, S.1    Smith, J.T.2    Lee, L.Y.3    Yan, F.4    Snyder, M.5    Hancock, W.S.6    Nice, E.7
  • 12
    • 84875915737 scopus 로고    scopus 로고
    • Improved detection of quantitative differences using a combination of spectral counting and MS/MS total ion current
    • Freund, D.M., and Prenni, J.E. (2013). Improved detection of quantitative differences using a combination of spectral counting and MS/MS total ion current. J. Proteome Res. 12, 1996-2004.
    • (2013) J. Proteome Res. , vol.12 , pp. 1996-2004
    • Freund, D.M.1    Prenni, J.E.2
  • 13
    • 0038333588 scopus 로고    scopus 로고
    • Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
    • DOI 10.1038/nbt810
    • Gevaert, K., Goethals, M., Martens, L., Van Damme, J., Staes, A., Thomas, G.R., and Vandekerckhove, J. (2003). Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. Nat. Biotechnol. 21, 566-569. (Pubitemid 36532024)
    • (2003) Nature Biotechnology , vol.21 , Issue.5 , pp. 566-569
    • Gevaert, K.1    Goethals, M.2    Martens, L.3    Van Damme, J.4    Staes, A.5    Thomas, G.R.6    Vandekerckhove, J.7
  • 14
    • 80053908024 scopus 로고    scopus 로고
    • Identification of key players for colorectal cancer metastasis by iTRAQ quantitative proteomics profiling of isogenic SW480 and SW620 cell lines
    • Ghosh, D., Yu, H., Tan, X.F., Lim, T.K., Zubaidah, R.M., Tan, H.T., Chung, M.C., and Lin, Q. (2011). Identification of key players for colorectal cancer metastasis by iTRAQ quantitative proteomics profiling of isogenic SW480 and SW620 cell lines. J. Proteome Res. 10, 4373-4387.
    • (2011) J. Proteome Res. , vol.10 , pp. 4373-4387
    • Ghosh, D.1    Yu, H.2    Tan, X.F.3    Lim, T.K.4    Zubaidah, R.M.5    Tan, H.T.6    Chung, M.C.7    Lin, Q.8
  • 15
    • 84859586780 scopus 로고    scopus 로고
    • Comprehensive phosphoproteome analysis of INS-1 pancreatic beta-cells using various digestion strategies coupled with liquid chromatography-tandem mass spectrometry
    • Han, D., Moon, S., Kim, Y., Ho, W.K., Kim, K., Kang, Y., and Jun, H. (2012). Comprehensive phosphoproteome analysis of INS-1 pancreatic beta-cells using various digestion strategies coupled with liquid chromatography-tandem mass spectrometry. J. Proteome Res. 11, 2206-2223.
    • (2012) J. Proteome Res. , vol.11 , pp. 2206-2223
    • Han, D.1    Moon, S.2    Kim, Y.3    Ho, W.K.4    Kim, K.5    Kang, Y.6    Jun, H.7
  • 16
    • 0034606998 scopus 로고    scopus 로고
    • Lung cancer
    • DOI 10.1016/S0140-6736(00)82038-3
    • Hoffman, P.C., Mauer, A.M., and Vokes, E.E. (2000). Lung cancer. Lancet 355, 479-485. (Pubitemid 30085163)
    • (2000) Lancet , vol.355 , Issue.9202 , pp. 479-485
    • Hoffman, P.C.1    Mauer, A.M.2    Vokes, E.E.3
  • 17
    • 0348014635 scopus 로고    scopus 로고
    • Stableisotope dimethyl labeling for quantitative proteomics
    • Hsu, J.L., Huang, S.Y., Chow, N.H., and Chen, S.H. (2003). Stableisotope dimethyl labeling for quantitative proteomics. Anal. Chem. 75, 6843-6852.
    • (2003) Anal. Chem. , vol.75 , pp. 6843-6852
    • Hsu, J.L.1    Huang, S.Y.2    Chow, N.H.3    Chen, S.H.4
  • 22
    • 84868334624 scopus 로고    scopus 로고
    • Retinal proteome analysis in a mouse model of oxygen-induced retinopathy
    • Kim, S.J., Jin, J., Kim, Y.J., Kim, Y., and Yu, H.G. (2012). Retinal proteome analysis in a mouse model of oxygen-induced retinopathy. J. Proteome Res. 11, 5186-5203.
    • (2012) J. Proteome Res. , vol.11 , pp. 5186-5203
    • Kim, S.J.1    Jin, J.2    Kim, Y.J.3    Kim, Y.4    Yu, H.G.5
  • 23
    • 79960134424 scopus 로고    scopus 로고
    • Identification and analysis of signaling networks potentially involved in breast carcinoma metastasis to the brain
    • Li, F., Glinskii, O.V., Zhou, J., Wilson, L.S., Barnes, S., Anthony, D.C., and Glinsky, V.V. (2011). Identification and analysis of signaling networks potentially involved in breast carcinoma metastasis to the brain. PLoS One 6, e21977.
    • (2011) PLoS One , vol.6
    • Li, F.1    Glinskii, O.V.2    Zhou, J.3    Wilson, L.S.4    Barnes, S.5    Anthony, D.C.6    Glinsky, V.V.7
  • 24
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • DOI 10.1021/ac0498563
    • Liu, H., Sadygov, R.G., and Yates, J.R., 3rd (2004). A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 76, 4193-4201. (Pubitemid 38943698)
    • (2004) Analytical Chemistry , vol.76 , Issue.14 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates III, J.R.3
  • 26
    • 57649155302 scopus 로고    scopus 로고
    • Proteases: Multifunctional enzymes in life and disease
    • Lopez-Otin, C., and Bond, J.S. (2008). Proteases: multifunctional enzymes in life and disease. J. Biol. Chem. 283, 30433-30437.
    • (2008) J. Biol. Chem. , vol.283 , pp. 30433-30437
    • Lopez-Otin, C.1    Bond, J.S.2
  • 27
    • 34248637584 scopus 로고    scopus 로고
    • Positional proteomics: Preparation of amino-terminal peptides as a strategy for proteome simplification and characterization
    • McDonald, L., and Beynon, R.J. (2006). Positional proteomics: preparation of amino-terminal peptides as a strategy for proteome simplification and characterization. Nat. Protoc. 1, 1790-1798.
    • (2006) Nat. Protoc. , vol.1 , pp. 1790-1798
    • McDonald, L.1    Beynon, R.J.2
  • 28
    • 38049068376 scopus 로고    scopus 로고
    • Prognostic role of serum cytokeratin 19 fragments in advanced non-small-cell lung cancer: Association of marker changes after two chemotherapy cycles with different measures of clinical response and survival
    • Nisman, B., Biran, H., Heching, N., Barak, V., Ramu, N., Nemirovsky, I., and Peretz, T. (2008). Prognostic role of serum cytokeratin 19 fragments in advanced non-small-cell lung cancer: association of marker changes after two chemotherapy cycles with different measures of clinical response and survival. Br. J. Cancer 98, 77-79.
    • (2008) Br. J. Cancer , vol.98 , pp. 77-79
    • Nisman, B.1    Biran, H.2    Heching, N.3    Barak, V.4    Ramu, N.5    Nemirovsky, I.6    Peretz, T.7
  • 29
    • 80052021555 scopus 로고    scopus 로고
    • Cyclophilin A enhances cell proliferation and tumor growth of liver flukeassociated cholangiocarcinoma
    • Obchoei, S., Weakley, S.M., Wongkham, S., Wongkham, C., Sawanyawisuth, K., Yao, Q., and Chen, C. (2011). Cyclophilin A enhances cell proliferation and tumor growth of liver flukeassociated cholangiocarcinoma. Mol. Cancer 10, 102.
    • (2011) Mol. Cancer , vol.10 , pp. 102
    • Obchoei, S.1    Weakley, S.M.2    Wongkham, S.3    Wongkham, C.4    Sawanyawisuth, K.5    Yao, Q.6    Chen, C.7
  • 31
    • 0038393112 scopus 로고    scopus 로고
    • Apoptosis in the development and maintenance of the immune system
    • DOI 10.1038/ni0503-410
    • Opferman, J.T., and Korsmeyer, S.J. (2003). Apoptosis in the development and maintenance of the immune system. Nat. Immunol. 4, 410-415. (Pubitemid 36592430)
    • (2003) Nature Immunology , vol.4 , Issue.5 , pp. 410-415
    • Opferman, J.T.1    Korsmeyer, S.J.2
  • 32
    • 33644889948 scopus 로고    scopus 로고
    • Use of statistics to assess the global burden of breast cancer
    • DOI 10.1111/j.1075-122X.2006.00205.x
    • Parkin, D.M., and Fernandez, L.M. (2006). Use of statistics to assess the global burden of breast cancer. Breast J. 12 Suppl 1, S70-80. (Pubitemid 43385274)
    • (2006) Breast Journal , vol.12 , Issue.SUPPL. 1
    • Parkin, D.M.1    Fernandez, L.M.G.2
  • 33
    • 77951134556 scopus 로고    scopus 로고
    • Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics
    • Prudova, A., auf dem Keller, U., Butler, G.S., and Overall, C.M. (2010). Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics. Mol. Cell. Proteomics 9, 894-911.
    • (2010) Mol. Cell. Proteomics , vol.9 , pp. 894-911
    • Prudova, A.1    Auf Dem Keller, U.2    Butler, G.S.3    Overall, C.M.4
  • 34
    • 0027530418 scopus 로고
    • Serum fragment of cytokeratin subunit 19 measured by CYFRA 21-1 immunoradiometric assay as a marker of lung cancer
    • Pujol, J.L., Grenier, J., Daures, J.P., Daver, A., Pujol, H., and Michel, F.B. (1993). Serum fragment of cytokeratin subunit 19 measured by CYFRA 21-1 immunoradiometric assay as a marker of lung cancer. Cancer Res. 53, 61-66. (Pubitemid 23019377)
    • (1993) Cancer Research , vol.53 , Issue.1 , pp. 61-66
    • Pujol, J.-L.1    Grenier, J.2    Daures, J.-P.3    Daver, A.4    Pujol, H.5    Michel, F.-B.6
  • 35
    • 0041737535 scopus 로고    scopus 로고
    • Molecular mechanisms of glioma invasiveness: The role of proteases
    • Rao, J.S. (2003). Molecular mechanisms of glioma invasiveness: the role of proteases. Nat. Rev. Cancer 3, 489-501.
    • (2003) Nat. Rev. Cancer , vol.3 , pp. 489-501
    • Rao, J.S.1
  • 36
    • 67649849871 scopus 로고    scopus 로고
    • Integrin beta1-focal adhesion kinase signaling directs the proliferation of metastatic cancer cells disseminated in the lungs
    • Shibue, T., and Weinberg, R.A. (2009). Integrin beta1-focal adhesion kinase signaling directs the proliferation of metastatic cancer cells disseminated in the lungs. Proc. Natl. Acad. Sci. USA 106, 10290-10295.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 10290-10295
    • Shibue, T.1    Weinberg, R.A.2
  • 40
    • 0034004679 scopus 로고    scopus 로고
    • A preliminary study of CA15-3, c-erbB-2, epidermal growth factor receptor, cathepsin-D, and p53 in saliva among women with breast carcinoma
    • Streckfus, C., Bigler, L., Tucci, M., and Thigpen, J.T. (2000). A preliminary study of CA15-3, c-erbB-2, epidermal growth factor receptor, cathepsin-D, and p53 in saliva among women with breast carcinoma. Cancer Invest. 18, 101-109. (Pubitemid 30118402)
    • (2000) Cancer Investigation , vol.18 , Issue.2 , pp. 101-109
    • Streckfus, C.1    Bigler, L.2    Tucci, M.3    Thigpen, J.T.4
  • 41
    • 84863053122 scopus 로고    scopus 로고
    • Identification of isocitrate dehydrogenase 1 as a potential diagnostic and prognostic biomarker for non-small cell lung cancer by proteomic analysis
    • Tan, F., Jiang, Y., Sun, N., Chen, Z., Lv, Y., Shao, K., Li, N., Qiu, B., Gao, Y., Li, B., et al. (2012). Identification of isocitrate dehydrogenase 1 as a potential diagnostic and prognostic biomarker for non-small cell lung cancer by proteomic analysis. Mol. Cell. Proteomics 11, M111 008821.
    • (2012) Mol. Cell. Proteomics , vol.11
    • Tan, F.1    Jiang, Y.2    Sun, N.3    Chen, Z.4    Lv, Y.5    Shao, K.6    Li, N.7    Qiu, B.8    Gao, Y.9    Li, B.10
  • 42
    • 34347209975 scopus 로고    scopus 로고
    • Determination of metastasis-associated proteins in non-small cell lung cancer by comparative proteomic analysis
    • DOI 10.1111/j.1349-7006.2007.00514.x
    • Tian, T., Hao, J., Xu, A., Luo, C., Liu, C., Huang, L., Xiao, X., and He, D. (2007). Determination of metastasis-associated proteins in non-small cell lung cancer by comparative proteomic analysis. Cancer Sci. 98, 1265-1274. (Pubitemid 46993548)
    • (2007) Cancer Science , vol.98 , Issue.8 , pp. 1265-1274
    • Tian, T.1    Hao, J.2    Xu, A.3    Hao, J.4    Luo, C.5    Liu, C.6    Huang, L.7    Xiao, X.8    He, D.9
  • 43
    • 82655187422 scopus 로고    scopus 로고
    • Identification of transaldolase as a novel serum biomarker for hepatocellular carcinoma metastasis using xenografted mouse model and clinic samples
    • Wang, C., Guo, K., Gao, D., Kang, X., Jiang, K., Li, Y., Sun, L., Zhang, S., Sun, C., Liu, X., et al. (2011). Identification of transaldolase as a novel serum biomarker for hepatocellular carcinoma metastasis using xenografted mouse model and clinic samples. Cancer Lett. 313, 154-166.
    • (2011) Cancer Lett. , vol.313 , pp. 154-166
    • Wang, C.1    Guo, K.2    Gao, D.3    Kang, X.4    Jiang, K.5    Li, Y.6    Sun, L.7    Zhang, S.8    Sun, C.9    Liu, X.10
  • 44
    • 0017379323 scopus 로고
    • Amino acid sequence in bovine serum albumin
    • Weijers, R.N. (1977). Amino acid sequence in bovine serum albumin. Clin. Chem. 23, 1361-1362.
    • (1977) Clin. Chem. , vol.23 , pp. 1361-1362
    • Weijers, R.N.1
  • 46
    • 67349266694 scopus 로고    scopus 로고
    • Universal sample preparation method for proteome analysis
    • Wisniewski, J.R., Zougman, A., Nagaraj, N., and Mann, M. (2009). Universal sample preparation method for proteome analysis. Nat. Methods 6, 359-362.
    • (2009) Nat. Methods , vol.6 , pp. 359-362
    • Wisniewski, J.R.1    Zougman, A.2    Nagaraj, N.3    Mann, M.4
  • 47
    • 43049124720 scopus 로고    scopus 로고
    • Signal cross talks for sustained MAPK activation and cell migration: The potential role of reactive oxygen species
    • Wu, W.S., Wu, J.R., and Hu, C.T. (2008). Signal cross talks for sustained MAPK activation and cell migration: the potential role of reactive oxygen species. Cancer Metastasis Rev. 27, 303-314.
    • (2008) Cancer Metastasis Rev. , vol.27 , pp. 303-314
    • Wu, W.S.1    Wu, J.R.2    Hu, C.T.3
  • 48
    • 77952844025 scopus 로고    scopus 로고
    • A comparative phosphoproteomic analysis of a human tumor metastasis model using a label-free quantitative approach
    • Xie, X., Feng, S., Vuong, H., Liu, Y., Goodison, S., and Lubman, D.M. (2010). A comparative phosphoproteomic analysis of a human tumor metastasis model using a label-free quantitative approach. Electrophoresis 31, 1842-1852.
    • (2010) Electrophoresis , vol.31 , pp. 1842-1852
    • Xie, X.1    Feng, S.2    Vuong, H.3    Liu, Y.4    Goodison, S.5    Lubman, D.M.6
  • 49
    • 73649116726 scopus 로고    scopus 로고
    • Identification of serum biomarkers for colorectal cancer metastasis using a differential secretome approach
    • Xue, H., Lu, B., Zhang, J., Wu, M., Huang, Q., Wu, Q., Sheng, H., Wu, D., Hu, J., and Lai, M. (2010). Identification of serum biomarkers for colorectal cancer metastasis using a differential secretome approach. J. Proteome Res. 9, 545-555.
    • (2010) J. Proteome Res. , vol.9 , pp. 545-555
    • Xue, H.1    Lu, B.2    Zhang, J.3    Wu, M.4    Huang, Q.5    Wu, Q.6    Sheng, H.7    Wu, D.8    Hu, J.9    Lai, M.10
  • 50
    • 34547161981 scopus 로고    scopus 로고
    • Gene expression profiling of human HBV- and/or HCV-associated hepatocellular carcinoma cells using expressed sequence tags
    • Yoon, S.Y., Kim, J.M., Oh, J.H., Jeon, Y.J., Lee, D.S., Kim, J.H., Choi, J.Y., Ahn, B.M., Kim, S., Yoo, H.S., et al. (2006). Gene expression profiling of human HBV- and/or HCV-associated hepatocellular carcinoma cells using expressed sequence tags. Int. J. Oncol. 29, 315-327.
    • (2006) Int. J. Oncol. , vol.29 , pp. 315-327
    • Yoon, S.Y.1    Kim, J.M.2    Oh, J.H.3    Jeon, Y.J.4    Lee, D.S.5    Kim, J.H.6    Choi, J.Y.7    Ahn, B.M.8    Kim, S.9    Yoo, H.S.10
  • 52
    • 33748319353 scopus 로고    scopus 로고
    • Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae
    • DOI 10.1021/pr060161n
    • Zybailov, B., Mosley, A.L., Sardiu, M.E., Coleman, M.K., Florens, L., and Washburn, M.P. (2006). Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae. J. Proteome Res. 5, 2339-2347. (Pubitemid 44330827)
    • (2006) Journal of Proteome Research , vol.5 , Issue.9 , pp. 2339-2347
    • Zybailov, B.1    Mosley, A.L.2    Sardiu, M.E.3    Coleman, M.K.4    Florens, L.5    Washburn, M.P.6


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