-
1
-
-
80054732682
-
Quantitative proteomics of complex mixtures
-
Coombs, K. M. Quantitative proteomics of complex mixtures Expert Rev. Proteomics 2011, 8 (5) 659-77
-
(2011)
Expert Rev. Proteomics
, vol.8
, Issue.5
, pp. 659-677
-
-
Coombs, K.M.1
-
2
-
-
79251535011
-
Quantitative proteomics for investigating psychiatric disorders
-
Filiou, M. D.; Turck, C. W.; Martins-de-Souza, D. Quantitative proteomics for investigating psychiatric disorders Proteomics. Clin. Appl. 2011, 5 (1-2) 38-49
-
(2011)
Proteomics. Clin. Appl.
, vol.5
, Issue.12
, pp. 38-49
-
-
Filiou, M.D.1
Turck, C.W.2
Martins-De-Souza, D.3
-
3
-
-
84863246603
-
Quantitative proteomics for cancer biomarker discovery
-
Liang, S.; Xu, Z.; Xu, X.; Zhao, X.; Huang, C.; Wei, Y. Quantitative proteomics for cancer biomarker discovery Comb. Chem. High Throughput Screening 2012, 15 (3) 221-31
-
(2012)
Comb. Chem. High Throughput Screening
, vol.15
, Issue.3
, pp. 221-231
-
-
Liang, S.1
Xu, Z.2
Xu, X.3
Zhao, X.4
Huang, C.5
Wei, Y.6
-
4
-
-
79951518985
-
Mining the plasma proteome for disease applications across seven logs of protein abundance
-
Zhang, Q.; Faca, V.; Hanash, S. Mining the plasma proteome for disease applications across seven logs of protein abundance J. Proteome Res. 2011, 10 (1) 46-50
-
(2011)
J. Proteome Res.
, vol.10
, Issue.1
, pp. 46-50
-
-
Zhang, Q.1
Faca, V.2
Hanash, S.3
-
5
-
-
37249014081
-
The biological impact of mass-spectrometry-based proteomics
-
Cravatt, B. F.; Simon, G. M.; Yates Iii, J. R. The biological impact of mass-spectrometry-based proteomics Nature 2007, 450 (7172) 991-1000
-
(2007)
Nature
, vol.450
, Issue.7172
, pp. 991-1000
-
-
Cravatt, B.F.1
Simon, G.M.2
Yates Iii, J.R.3
-
6
-
-
79960396255
-
Liquid chromatography-mass spectrometry-based quantitative proteomics
-
Xie, F.; Liu, T.; Qian, W. J.; Petyuk, V. A.; Smith, R. D. Liquid chromatography-mass spectrometry-based quantitative proteomics J.. Biol. Chem. 2011, 286 (29) 25443-9
-
(2011)
J. Biol. Chem.
, vol.286
, Issue.29
, pp. 25443-25449
-
-
Xie, F.1
Liu, T.2
Qian, W.J.3
Petyuk, V.A.4
Smith, R.D.5
-
7
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi, S. P.; Rist, B.; Gerber, S. A.; Turecek, F.; Gelb, M. H.; Aebersold, R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags Nat. Biotechnol. 1999, 17 (10) 994-9
-
(1999)
Nat. Biotechnol.
, vol.17
, Issue.10
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
8
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E.; Blagoev, B.; Kratchmarova, I.; Kristensen, D. B.; Steen, H.; Pandey, A.; Mann, M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics Mol. Cell. Proteomics 2002, 1 (5) 376-86
-
(2002)
Mol. Cell. Proteomics
, vol.1
, Issue.5
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
9
-
-
12444345515
-
Tandem mass tags: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
-
Thompson, A.; Schäfer, J.; Kuhn, K.; Kienle, S.; Schwarz, J.; Schmidt, G.; Neumann, T.; Hamon, C. Tandem mass tags: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS Anal. Chem. 2003, 75 (8) 1895-1904
-
(2003)
Anal. Chem.
, vol.75
, Issue.8
, pp. 1895-1904
-
-
Thompson, A.1
Schäfer, J.2
Kuhn, K.3
Kienle, S.4
Schwarz, J.5
Schmidt, G.6
Neumann, T.7
Hamon, C.8
-
10
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross, P. L.; Huang, Y. N.; Marchese, J. N.; Williamson, B.; Parker, K.; Hattan, S.; Khainovski, N.; Pillai, S.; Dey, S.; Daniels, S.; Purkayastha, S.; Juhasz, P.; Martin, S.; Bartlet-Jones, M.; He, F.; Jacobson, A.; Pappin, D. J. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents Mol. Cell. Proteomics 2004, 3 (12) 1154-69
-
(2004)
Mol. Cell. Proteomics
, vol.3
, Issue.12
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
Purkayastha, S.11
Juhasz, P.12
Martin, S.13
Bartlet-Jones, M.14
He, F.15
Jacobson, A.16
Pappin, D.J.17
-
11
-
-
44049105535
-
Experimental and computational approaches to quantitative proteomics: Status quo and outlook
-
Panchaud, A.; Affolter, M.; Moreillon, P.; Kussmann, M. Experimental and computational approaches to quantitative proteomics: status quo and outlook J. Proteomics 2008, 71 (1) 19-33
-
(2008)
J. Proteomics
, vol.71
, Issue.1
, pp. 19-33
-
-
Panchaud, A.1
Affolter, M.2
Moreillon, P.3
Kussmann, M.4
-
12
-
-
84864134293
-
Quantitative mass spectrometry-based proteomics: An overview
-
Nikolov, M.; Schmidt, C.; Urlaub, H. Quantitative mass spectrometry-based proteomics: An overview Methods Mol. Biol. 2012, 893, 85-100
-
(2012)
Methods Mol. Biol.
, vol.893
, pp. 85-100
-
-
Nikolov, M.1
Schmidt, C.2
Urlaub, H.3
-
13
-
-
34748916981
-
Quantitative mass spectrometry in proteomics: A critical review
-
Bantscheff, M.; Schirle, M.; Sweetman, G.; Rick, J.; Kuster, B. Quantitative mass spectrometry in proteomics: A critical review Anal. Bioanal. Chem. 2007, 389 (4) 1017-31
-
(2007)
Anal. Bioanal. Chem.
, vol.389
, Issue.4
, pp. 1017-1031
-
-
Bantscheff, M.1
Schirle, M.2
Sweetman, G.3
Rick, J.4
Kuster, B.5
-
14
-
-
3242731195
-
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
-
Liu, H.; Sadygov, R. G.; Yates, J. R., III. A model for random sampling and estimation of relative protein abundance in shotgun proteomics Anal. Chem. 2004, 76 (14) 4193-201
-
(2004)
Anal. Chem.
, vol.76
, Issue.14
, pp. 4193-4201
-
-
Liu, H.1
Sadygov, R.G.2
Yates III, J.R.3
-
15
-
-
27644543078
-
Comparison of label-free methods for quantifying human proteins by shotgun proteomics
-
Old, W. M.; Meyer-Arendt, K.; Aveline-Wolf, L.; Pierce, K. G.; Mendoza, A.; Sevinsky, J. R.; Resing, K. A.; Ahn, N. G. Comparison of label-free methods for quantifying human proteins by shotgun proteomics Mol. Cell. Proteomics 2005, 4 (10) 1487-502
-
(2005)
Mol. Cell. Proteomics
, vol.4
, Issue.10
, pp. 1487-1502
-
-
Old, W.M.1
Meyer-Arendt, K.2
Aveline-Wolf, L.3
Pierce, K.G.4
Mendoza, A.5
Sevinsky, J.R.6
Resing, K.A.7
Ahn, N.G.8
-
16
-
-
74049115774
-
Mass spectrometry-based label-free quantitative proteomics
-
Zhu, W.; Smith, J. W.; Huang, C. M. Mass spectrometry-based label-free quantitative proteomics J. Biomed. Biotechnol. 2010, 2010, 840518
-
(2010)
J. Biomed. Biotechnol.
, vol.2010
, pp. 840518
-
-
Zhu, W.1
Smith, J.W.2
Huang, C.M.3
-
17
-
-
34250722602
-
Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks
-
Wolf-Yadlin, A.; Hautaniemi, S.; Lauffenburger, D. A.; White, F. M. Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks Proc. Natl. Acad. Sci. U.S.A. 2007, 104 (14) 5860-5
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, Issue.14
, pp. 5860-5865
-
-
Wolf-Yadlin, A.1
Hautaniemi, S.2
Lauffenburger, D.A.3
White, F.M.4
-
18
-
-
74049132731
-
Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis
-
Griffin, N. M.; Yu, J.; Long, F.; Oh, P.; Shore, S.; Li, Y.; Koziol, J. A.; Schnitzer, J. E. Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis Nat. Biotechnol. 2010, 28 (1) 83-89
-
(2010)
Nat. Biotechnol.
, vol.28
, Issue.1
, pp. 83-89
-
-
Griffin, N.M.1
Yu, J.2
Long, F.3
Oh, P.4
Shore, S.5
Li, Y.6
Koziol, J.A.7
Schnitzer, J.E.8
-
19
-
-
41149127192
-
A label-free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen
-
Asara, J. M.; Christofk, H. R.; Freimark, L. M.; Cantley, L. C. A label-free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen Proteomics 2008, 8 (5) 994-9
-
(2008)
Proteomics
, vol.8
, Issue.5
, pp. 994-999
-
-
Asara, J.M.1
Christofk, H.R.2
Freimark, L.M.3
Cantley, L.C.4
-
20
-
-
84862202249
-
NSI and NSMT: Usages of MS/MS fragment ion intensity for sensitive differential proteome detection and accurate protein fold change calculation in relative label-free proteome quantification
-
Wu, Q.; Zhao, Q.; Liang, Z.; Qu, Y.; Zhang, L.; Zhang, Y. NSI and NSMT: usages of MS/MS fragment ion intensity for sensitive differential proteome detection and accurate protein fold change calculation in relative label-free proteome quantification The Analyst 2012, 137 (13) 3146-53
-
(2012)
The Analyst
, vol.137
, Issue.13
, pp. 3146-3153
-
-
Wu, Q.1
Zhao, Q.2
Liang, Z.3
Qu, Y.4
Zhang, L.5
Zhang, Y.6
-
21
-
-
84872420006
-
Response of the mitochondrial proteome of rat renal proximal convoluted tubules to chronic metabolic acidosis
-
Freund, D. M.; Prenni, J. E.; Curthoys, N. P. Response of the mitochondrial proteome of rat renal proximal convoluted tubules to chronic metabolic acidosis Am. J. Physiol.: Renal Physiol. 2013, 304 (2) F145-55
-
(2013)
Am. J. Physiol.: Renal Physiol.
, vol.304
, Issue.2
, pp. 145-155
-
-
Freund, D.M.1
Prenni, J.E.2
Curthoys, N.P.3
-
22
-
-
0027639332
-
Metabolic aspects of metabolic acidosis
-
Halperin, M. L. Metabolic aspects of metabolic acidosis Clin. Invest. Med. 1993, 16 (4) 294-305
-
(1993)
Clin. Invest. Med.
, vol.16
, Issue.4
, pp. 294-305
-
-
Halperin, M.L.1
-
23
-
-
0015918917
-
The distribution of glutaminase isoenzymes in the various structures of the nephron in normal, acidotic, and alkalotic rat kidney
-
Curthoys, N. P.; Lowry, O. H. The distribution of glutaminase isoenzymes in the various structures of the nephron in normal, acidotic, and alkalotic rat kidney J. Biol. Chem. 1973, 248 (1) 162-8
-
(1973)
J. Biol. Chem.
, vol.248
, Issue.1
, pp. 162-168
-
-
Curthoys, N.P.1
Lowry, O.H.2
-
24
-
-
0025650951
-
Phosphate-dependent glutaminase activity in rat renal cortical and medullary tubule segments
-
Wright, P. A.; Knepper, M. A. Phosphate-dependent glutaminase activity in rat renal cortical and medullary tubule segments Am. J. Physiol. 1990, 259 (6 Pt 2) F961-70
-
(1990)
Am. J. Physiol.
, vol.259
, Issue.6 PART 2
, pp. 961-970
-
-
Wright, P.A.1
Knepper, M.A.2
-
25
-
-
0025003679
-
Glutamate dehydrogenase activities in microdissected rat nephron segments: Effects of acid-base loading
-
Wright, P. A.; Knepper, M. A. Glutamate dehydrogenase activities in microdissected rat nephron segments: effects of acid-base loading Am. J. Physiol. 1990, 259 (1 Pt 2) F53-9
-
(1990)
Am. J. Physiol.
, vol.259
, Issue.1 PART 2
, pp. 53-59
-
-
Wright, P.A.1
Knepper, M.A.2
-
26
-
-
33846248808
-
Proteomic analysis of the adaptive response of rat renal proximal tubules to metabolic acidosis
-
Curthoys, N. P.; Taylor, L.; Hoffert, J. D.; Knepper, M. A. Proteomic analysis of the adaptive response of rat renal proximal tubules to metabolic acidosis Am. J. Physiol.: Renal Physiol. 2007, 292 (1) F140-7
-
(2007)
Am. J. Physiol.: Renal Physiol.
, vol.292
, Issue.1
, pp. 140-147
-
-
Curthoys, N.P.1
Taylor, L.2
Hoffert, J.D.3
Knepper, M.A.4
-
27
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford, M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal. Biochem. 1976, 72, 248-54
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
28
-
-
0022186670
-
Measurement of protein using bicinchoninic acid
-
Smith, P. K.; Krohn, R. I.; Hermanson, G. T.; Mallia, A. K.; Gartner, F. H.; Provenzano, M. D.; Fujimoto, E. K.; Goeke, N. M.; Olson, B. J.; Klenk, D. C. Measurement of protein using bicinchoninic acid Anal. Biochem. 1985, 150 (1) 76-85
-
(1985)
Anal. Biochem.
, vol.150
, Issue.1
, pp. 76-85
-
-
Smith, P.K.1
Krohn, R.I.2
Hermanson, G.T.3
Mallia, A.K.4
Gartner, F.H.5
Provenzano, M.D.6
Fujimoto, E.K.7
Goeke, N.M.8
Olson, B.J.9
Klenk, D.C.10
-
29
-
-
84866124119
-
Comparison of one- and two-dimensional liquid chromatography approaches in the label-free quantitative analysis of Methylocella silvestris
-
Patel, N. A.; Crombie, A.; Slade, S. E.; Thalassinos, K.; Hughes, C.; Connolly, J. B.; Langridge, J.; Murrell, J. C.; Scrivens, J. H. Comparison of one- and two-dimensional liquid chromatography approaches in the label-free quantitative analysis of Methylocella silvestris J. Proteome Res. 2012, 11 (9) 4755-63
-
(2012)
J. Proteome Res.
, vol.11
, Issue.9
, pp. 4755-4763
-
-
Patel, N.A.1
Crombie, A.2
Slade, S.E.3
Thalassinos, K.4
Hughes, C.5
Connolly, J.B.6
Langridge, J.7
Murrell, J.C.8
Scrivens, J.H.9
-
30
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
-
Keller, A.; Nesvizhskii, A. I.; Kolker, E.; Aebersold, R. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search Anal. Chem. 2002, 74 (20) 5383-92
-
(2002)
Anal. Chem.
, vol.74
, Issue.20
, pp. 5383-5392
-
-
Keller, A.1
Nesvizhskii, A.I.2
Kolker, E.3
Aebersold, R.4
-
31
-
-
0042338362
-
A statistical model for identifying proteins by tandem mass spectrometry
-
Nesvizhskii, A. I.; Keller, A.; Kolker, E.; Aebersold, R. A statistical model for identifying proteins by tandem mass spectrometry Anal. Chem. 2003, 75 (17) 4646-58
-
(2003)
Anal. Chem.
, vol.75
, Issue.17
, pp. 4646-4658
-
-
Nesvizhskii, A.I.1
Keller, A.2
Kolker, E.3
Aebersold, R.4
-
32
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
Elias, J. E.; Gygi, S. P. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry Nat. Methods 2007, 4 (3) 207-14
-
(2007)
Nat. Methods
, vol.4
, Issue.3
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
33
-
-
42649131100
-
Statistical similarities between transcriptomics and quantitative shotgun proteomics data
-
Pavelka, N.; Fournier, M. L.; Swanson, S. K.; Pelizzola, M.; Ricciardi-Castagnoli, P.; Florens, L.; Washburn, M. P. Statistical similarities between transcriptomics and quantitative shotgun proteomics data Mol. Cell. Proteomics 2008, 7 (4) 631-44
-
(2008)
Mol. Cell. Proteomics
, vol.7
, Issue.4
, pp. 631-644
-
-
Pavelka, N.1
Fournier, M.L.2
Swanson, S.K.3
Pelizzola, M.4
Ricciardi-Castagnoli, P.5
Florens, L.6
Washburn, M.P.7
-
34
-
-
77951650200
-
Role of spectral counting in quantitative proteomics
-
Lundgren, D. H.; Hwang, S. I.; Wu, L.; Han, D. K. Role of spectral counting in quantitative proteomics Expert Rev. Proteomics 2010, 7 (1) 39-53
-
(2010)
Expert Rev. Proteomics
, vol.7
, Issue.1
, pp. 39-53
-
-
Lundgren, D.H.1
Hwang, S.I.2
Wu, L.3
Han, D.K.4
-
35
-
-
66749171697
-
Statistical design of quantitative mass spectrometry-based proteomic experiments
-
Oberg, A. L.; Vitek, O. Statistical design of quantitative mass spectrometry-based proteomic experiments J. Proteome Res. 2009, 8 (5) 2144-56
-
(2009)
J. Proteome Res.
, vol.8
, Issue.5
, pp. 2144-2156
-
-
Oberg, A.L.1
Vitek, O.2
-
36
-
-
42049094894
-
Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments
-
Wong, J. W.; Sullivan, M. J.; Cagney, G. Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments Briefings Bioinf. 2008, 9 (2) 156-65
-
(2008)
Briefings Bioinf.
, vol.9
, Issue.2
, pp. 156-165
-
-
Wong, J.W.1
Sullivan, M.J.2
Cagney, G.3
|