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Volumn 16, Issue 7, 2014, Pages 2112-2125

Phylogeography and population structure of the biologically invasive phytopathogen Erwinia amylovora inferred using minisatellites

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); ERWINIA AMYLOVORA;

EID: 84903782478     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/1462-2920.12289     Document Type: Article
Times cited : (43)

References (69)
  • 1
    • 84864044587 scopus 로고    scopus 로고
    • A model-based Bayesian estimation of the rate of evolution of VNTR loci in Mycobacterium tuberculosis
    • Aandahl, R.Z., Reyes, J.F., Sisson, S.A., and Tanaka, M.M. (2012) A model-based Bayesian estimation of the rate of evolution of VNTR loci in Mycobacterium tuberculosis. PLoS Comput Biol 8: e1002573.
    • (2012) PLoS Comput Biol , vol.8
    • Aandahl, R.Z.1    Reyes, J.F.2    Sisson, S.A.3    Tanaka, M.M.4
  • 2
    • 53849111617 scopus 로고    scopus 로고
    • Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens
    • Achtman, M. (2008) Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens. Annu Rev Microbiol 62: 53-70.
    • (2008) Annu Rev Microbiol , vol.62 , pp. 53-70
    • Achtman, M.1
  • 3
    • 79960944810 scopus 로고    scopus 로고
    • Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates
    • Baltrus, D.A., Nishimura, M.T., Romanchuk, A., Chang, J.H., Mukhtar, M.S., Cherkis, K., etal. (2011) Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates. PLoS Pathog 7: e1002132.
    • (2011) PLoS Pathog , vol.7
    • Baltrus, D.A.1    Nishimura, M.T.2    Romanchuk, A.3    Chang, J.H.4    Mukhtar, M.S.5    Cherkis, K.6
  • 4
    • 0033152406 scopus 로고    scopus 로고
    • The role of short sequence repeats in epidemiologic typing
    • van Belkum, A. (1999) The role of short sequence repeats in epidemiologic typing. Curr Opin Microbiol 2: 306-311.
    • (1999) Curr Opin Microbiol , vol.2 , pp. 306-311
    • Van Belkum, A.1
  • 5
    • 33846483622 scopus 로고    scopus 로고
    • Tracing isolates of bacterial species by multilocus variable number of tandem repeat analysis (MLVA)
    • van Belkum, A. (2007) Tracing isolates of bacterial species by multilocus variable number of tandem repeat analysis (MLVA). FEMS Immunol Med Microbiol 49: 22-27.
    • (2007) FEMS Immunol Med Microbiol , vol.49 , pp. 22-27
    • van Belkum, A.1
  • 7
    • 80053582792 scopus 로고    scopus 로고
    • Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp
    • Bogdanove, A.J., Koebnik, R., Lu, H., Furutani, A., Angiuoli, S.V., Patil, P.B., etal. (2011) Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. J Bacteriol 193: 5450-5464.
    • (2011) J Bacteriol , vol.193 , pp. 5450-5464
    • Bogdanove, A.J.1    Koebnik, R.2    Lu, H.3    Furutani, A.4    Angiuoli, S.V.5    Patil, P.B.6
  • 9
    • 80052353685 scopus 로고    scopus 로고
    • A rapid lateral-flow immunoassay for phytosanitary detection of Erwinia amylovora and on-site fire blight diagnosis
    • Braun-Kiewnick, A., Altenbach, D., Oberhänsli, T., Bitterlin, W., and Duffy, B. (2011) A rapid lateral-flow immunoassay for phytosanitary detection of Erwinia amylovora and on-site fire blight diagnosis. J Microbiol Methods 87: 1-9.
    • (2011) J Microbiol Methods , vol.87 , pp. 1-9
    • Braun-Kiewnick, A.1    Altenbach, D.2    Oberhänsli, T.3    Bitterlin, W.4    Duffy, B.5
  • 10
    • 59949095451 scopus 로고    scopus 로고
    • From local surveys to global surveillance: Three high-throughput genotyping methods for epidemiological monitoring of Xanthomonas citri pv. citri pathotypes
    • Bui Thi Ngoc, L., Vernière, C., Jarne, P., Brisse, S., Guérin, F., Boutry, S., etal. (2009) From local surveys to global surveillance: Three high-throughput genotyping methods for epidemiological monitoring of Xanthomonas citri pv. citri pathotypes. Appl Environ Microbiol 75: 1173-1184.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 1173-1184
    • Bui Thi Ngoc, L.1    Vernière, C.2    Jarne, P.3    Brisse, S.4    Guérin, F.5    Boutry, S.6
  • 11
    • 0242523875 scopus 로고    scopus 로고
    • Natural selection and the emergence of a mutation phenotype: an update of the evolutionary synthesis considering mechanisms that affect genome variation
    • Caporale, L.H. (2003) Natural selection and the emergence of a mutation phenotype: an update of the evolutionary synthesis considering mechanisms that affect genome variation. Annu Rev Microbiol 57: 467-485.
    • (2003) Annu Rev Microbiol , vol.57 , pp. 467-485
    • Caporale, L.H.1
  • 14
    • 73049084973 scopus 로고    scopus 로고
    • JSTRING: a novel Java tandem repeats searcher in genomic sequences with an interactive graphic output
    • De Fonzo, V., Aluffi-Pentini, F., and Parisi, V. (2008) JSTRING: a novel Java tandem repeats searcher in genomic sequences with an interactive graphic output. Open Appl Inform J 2: 14-17.
    • (2008) Open Appl Inform J , vol.2 , pp. 14-17
    • De Fonzo, V.1    Aluffi-Pentini, F.2    Parisi, V.3
  • 15
    • 0007906536 scopus 로고
    • On the decay of apple trees
    • Transactions of the Society for the Promotions of Useful Arts, in the State of New York).
    • Denning, W. (1793) On the decay of apple trees. NY Soc Prom Agric Arts Manuf Trans 2: 219-222. (Transactions of the Society for the Promotions of Useful Arts, in the State of New York).
    • (1793) NY Soc Prom Agric Arts Manuf Trans , vol.2 , pp. 219-222
    • Denning, W.1
  • 16
    • 2942542734 scopus 로고    scopus 로고
    • Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains: a web-based resource
    • Denoeud, F., and Vergnaud, G. (2004) Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains: a web-based resource. BMC Bioinf 5: 4.
    • (2004) BMC Bioinf , vol.5 , pp. 4
    • Denoeud, F.1    Vergnaud, G.2
  • 17
    • 35448947938 scopus 로고    scopus 로고
    • Exploring diversity among Spanish strains of Erwinia amylovora and possible infection sources
    • Donat, V., Biosca, E.G., Peñalver, J., and López, M.M. (2007) Exploring diversity among Spanish strains of Erwinia amylovora and possible infection sources. J Appl Microbiol 103: 1639-1649.
    • (2007) J Appl Microbiol , vol.103 , pp. 1639-1649
    • Donat, V.1    Biosca, E.G.2    Peñalver, J.3    López, M.M.4
  • 18
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software structure: a simulation study
    • Evanno, G., Regnaut, S., and Goudet, J. (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol 14: 2611-2620.
    • (2005) Mol Ecol , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 19
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data
    • Excoffier, L., Smouse, P.E., and Quattro, J.M. (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 20
    • 0035793056 scopus 로고    scopus 로고
    • Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences
    • Feil, E.J., Holmes, E.C., Bessen, D.E., Chan, M.-S., Day, N.P.J., Enright, M.C., etal. (2001) Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences. Proc Natl Acad Sci U S A 98: 182-187.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 182-187
    • Feil, E.J.1    Holmes, E.C.2    Bessen, D.E.3    Chan, M.-S.4    Day, N.P.J.5    Enright, M.C.6
  • 22
    • 84862761617 scopus 로고    scopus 로고
    • Differentiation of Erwinia amylovora and Erwinia pyrifoliae strains with single nucleotide polymorphisms and by synthesis of dihydrophenylalanine
    • Gehring, I., and Geider, K. (2012) Differentiation of Erwinia amylovora and Erwinia pyrifoliae strains with single nucleotide polymorphisms and by synthesis of dihydrophenylalanine. Curr Microbiol 65: 73-84.
    • (2012) Curr Microbiol , vol.65 , pp. 73-84
    • Gehring, I.1    Geider, K.2
  • 23
    • 0031883301 scopus 로고    scopus 로고
    • The fimbria gene cluster of nonencapsulated Haemophilus influenzae
    • Geluk, F., Eijk, P.P., van Ham, S.M., Jansen, H.M., and van Alphen, L. (1998) The fimbria gene cluster of nonencapsulated Haemophilus influenzae. Infect Immun 66: 406-417.
    • (1998) Infect Immun , vol.66 , pp. 406-417
    • Geluk, F.1    Eijk, P.P.2    van Ham, S.M.3    Jansen, H.M.4    van Alphen, L.5
  • 24
    • 2942593885 scopus 로고    scopus 로고
    • Differential plague-transmission dynamics determine Yersinia pestis population genetic structure on local, regional, and global scales
    • Girard, J.M., Wagner, D.M., Vogler, A.J., Keys, C., Allender, C.J., Drickamer, L.C., and Keim, P. (2004) Differential plague-transmission dynamics determine Yersinia pestis population genetic structure on local, regional, and global scales. Proc Natl Acad Sci U S A 101: 8408-8413.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 8408-8413
    • Girard, J.M.1    Wagner, D.M.2    Vogler, A.J.3    Keys, C.4    Allender, C.J.5    Drickamer, L.C.6    Keim, P.7
  • 25
    • 84861123507 scopus 로고    scopus 로고
    • Housekeeping gene sequencing and multilocus variable-number tandem-repeat analysis to identify subpopulations within Pseudomonas syringae pv. maculicola and Pseudomonas syringae pv. tomato that correlate with host specificity
    • Gironde, S., and Manceau, C. (2012) Housekeeping gene sequencing and multilocus variable-number tandem-repeat analysis to identify subpopulations within Pseudomonas syringae pv. maculicola and Pseudomonas syringae pv. tomato that correlate with host specificity. Appl Environ Microbiol 78: 3266-3279.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 3266-3279
    • Gironde, S.1    Manceau, C.2
  • 26
    • 77749282947 scopus 로고    scopus 로고
    • Evolution of the population structure of Venturia inaequalis, the apple scab fungus, associated with the domestication of its host
    • Gladieux, P., Zhang, X.-G., Ròldan-Ruiz, I., Caffier, V., Leroy, T., Devaux, M., etal. (2010) Evolution of the population structure of Venturia inaequalis, the apple scab fungus, associated with the domestication of its host. Mol Ecol 19: 658-674.
    • (2010) Mol Ecol , vol.19 , pp. 658-674
    • Gladieux, P.1    Zhang, X.-G.2    Ròldan-Ruiz, I.3    Caffier, V.4    Leroy, T.5    Devaux, M.6
  • 29
    • 0036010687 scopus 로고    scopus 로고
    • Following spread of fire blight in Western, Central and Southern Europe by molecular differentiation of Erwinia amylovora strains with PFGE analysis
    • Jock, S., Donat, V., López, M.M., Bazzi, C., and Geider, K. (2002) Following spread of fire blight in Western, Central and Southern Europe by molecular differentiation of Erwinia amylovora strains with PFGE analysis. Environ Microbiol 4: 106-114.
    • (2002) Environ Microbiol , vol.4 , pp. 106-114
    • Jock, S.1    Donat, V.2    López, M.M.3    Bazzi, C.4    Geider, K.5
  • 30
    • 84878472573 scopus 로고    scopus 로고
    • Molecular analyses of Erwinia amylovora strains isolated in Russia, Poland, Slovenia and Austria describing further spread of fire blight in Europe
    • doi:10.1016/j.micres.2013.01.008.
    • Jock, S., Wensing, A., Pulawska, J., Drenova, N., Dreo, T., and Geider, K. (2013) Molecular analyses of Erwinia amylovora strains isolated in Russia, Poland, Slovenia and Austria describing further spread of fire blight in Europe. Microbiol Res 168. doi:10.1016/j.micres.2013.01.008.
    • (2013) Microbiol Res , vol.168
    • Jock, S.1    Wensing, A.2    Pulawska, J.3    Drenova, N.4    Dreo, T.5    Geider, K.6
  • 31
    • 0032723592 scopus 로고    scopus 로고
    • Analysis of variable short-sequence DNA repeats on the 29kb plasmid of Erwinia amylovora strains
    • Kim, W.S., and Geider, K. (1999) Analysis of variable short-sequence DNA repeats on the 29kb plasmid of Erwinia amylovora strains. Eur J Plant Pathol 105: 703-713.
    • (1999) Eur J Plant Pathol , vol.105 , pp. 703-713
    • Kim, W.S.1    Geider, K.2
  • 32
    • 0034830315 scopus 로고    scopus 로고
    • Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome
    • Klevytska, A.M., Price, L.B., Schupp, J.M., Worsham, P.L., Wong, J., and Keim, P. (2001) Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome. J Clin Microbiol 39: 3179-3185.
    • (2001) J Clin Microbiol , vol.39 , pp. 3179-3185
    • Klevytska, A.M.1    Price, L.B.2    Schupp, J.M.3    Worsham, P.L.4    Wong, J.5    Keim, P.6
  • 33
    • 13944278113 scopus 로고    scopus 로고
    • First outbreaks of fireblight in Slovenia
    • Knapic, V., Potocnik, A., Skerlavaj, V., and Brecl, A. (2004) First outbreaks of fireblight in Slovenia. EPPO Bull 34: 351-356.
    • (2004) EPPO Bull , vol.34 , pp. 351-356
    • Knapic, V.1    Potocnik, A.2    Skerlavaj, V.3    Brecl, A.4
  • 34
    • 22244459534 scopus 로고    scopus 로고
    • Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria
    • Lindstedt, B.-A. (2005) Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria. Electrophoresis 26: 2567-2582.
    • (2005) Electrophoresis , vol.26 , pp. 2567-2582
    • Lindstedt, B.-A.1
  • 35
    • 33747052839 scopus 로고    scopus 로고
    • An indigenous virulent strain of Erwinia amylovora lacking the ubiquitous plasmid pEA29
    • Llop, P., Donat, V., Rodríguez, M., Cabrefiga, J., Ruz, L., Palomo, J.L., etal. (2006) An indigenous virulent strain of Erwinia amylovora lacking the ubiquitous plasmid pEA29. Phytopathology 96: 900-907.
    • (2006) Phytopathology , vol.96 , pp. 900-907
    • Llop, P.1    Donat, V.2    Rodríguez, M.3    Cabrefiga, J.4    Ruz, L.5    Palomo, J.L.6
  • 36
    • 84864425353 scopus 로고    scopus 로고
    • Erwinia amylovora CRISPR elements provide new tools for evaluating strain diversity and for microbial source tracking
    • McGhee, G.C., and Sundin, G.W. (2012) Erwinia amylovora CRISPR elements provide new tools for evaluating strain diversity and for microbial source tracking. PLoS ONE 7: e41706.
    • (2012) PLoS ONE , vol.7
    • McGhee, G.C.1    Sundin, G.W.2
  • 37
    • 0029189033 scopus 로고
    • Genetic fingerprinting of Erwinia amylovora strains isolated from tree-fruit crops and Rubus spp
    • McManus, P.S., and Jones, A.L. (1995) Genetic fingerprinting of Erwinia amylovora strains isolated from tree-fruit crops and Rubus spp. Phytopathology 85: 1547-1553.
    • (1995) Phytopathology , vol.85 , pp. 1547-1553
    • McManus, P.S.1    Jones, A.L.2
  • 38
    • 22144489176 scopus 로고    scopus 로고
    • Comparison of multiple-locus variable-number tandem-repeat analysis with pulsed-field gel electrophoresis, spa yyping, and multilocus sequence typing for clonal characterization of Staphylococcus aureus isolates
    • Malachowa, N., Sabat, A., Gniadkowski, M., Krzyszton-Russjan, J., Empel, J., Miedzobrodzki, J., etal. (2005) Comparison of multiple-locus variable-number tandem-repeat analysis with pulsed-field gel electrophoresis, spa yyping, and multilocus sequence typing for clonal characterization of Staphylococcus aureus isolates. J Clin Microbiol 43: 3095-3100.
    • (2005) J Clin Microbiol , vol.43 , pp. 3095-3100
    • Malachowa, N.1    Sabat, A.2    Gniadkowski, M.3    Krzyszton-Russjan, J.4    Empel, J.5    Miedzobrodzki, J.6
  • 39
    • 84862313583 scopus 로고    scopus 로고
    • Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element
    • Mann, R.A., Blom, J., Bühlmann, A., Plummer, K.M., Beer, S.V., Luck, J.E., etal. (2012) Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element. Gene 504: 6-12.
    • (2012) Gene , vol.504 , pp. 6-12
    • Mann, R.A.1    Blom, J.2    Bühlmann, A.3    Plummer, K.M.4    Beer, S.V.5    Luck, J.E.6
  • 40
    • 84873608021 scopus 로고    scopus 로고
    • Comparative genomics of 12 strains of Erwinia amylovora identifies a pan-genome with a large conserved core
    • Mann, R.A., Smits, T.H.M., Bühlmann, A., Blom, J., Goesmann, A., Frey, J.E., etal. (2013) Comparative genomics of 12 strains of Erwinia amylovora identifies a pan-genome with a large conserved core. PLoS ONE 8: e55644.
    • (2013) PLoS ONE , vol.8
    • Mann, R.A.1    Smits, T.H.M.2    Bühlmann, A.3    Blom, J.4    Goesmann, A.5    Frey, J.E.6
  • 42
    • 0035852711 scopus 로고    scopus 로고
    • High-resolution minisatellite-based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology
    • Mazars, E., Lesjean, S., Banuls, A.-L., Gilbert, M., Vincent, V., Gicquel, B., etal. (2001) High-resolution minisatellite-based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology. Proc Natl Acad Sci U S A 98: 1901-1906.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 1901-1906
    • Mazars, E.1    Lesjean, S.2    Banuls, A.-L.3    Gilbert, M.4    Vincent, V.5    Gicquel, B.6
  • 44
    • 80053133499 scopus 로고    scopus 로고
    • Evidence for several waves of global transmission in the seventh cholera pandemic
    • Mutreja, A., Kim, D.W., Thomson, N.R., Connor, T.R., Lee, J.H., Kariuki, S., etal. (2011) Evidence for several waves of global transmission in the seventh cholera pandemic. Nature 477: 462-465.
    • (2011) Nature , vol.477 , pp. 462-465
    • Mutreja, A.1    Kim, D.W.2    Thomson, N.R.3    Connor, T.R.4    Lee, J.H.5    Kariuki, S.6
  • 45
    • 0006919926 scopus 로고
    • Analysis of gene diversity in subdivided populations
    • Nei, M. (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci U S A 70: 3321-3323.
    • (1973) Proc Natl Acad Sci U S A , vol.70 , pp. 3321-3323
    • Nei, M.1
  • 46
    • 80054924581 scopus 로고    scopus 로고
    • Bacterial epidemiology and biology - lessons from genome sequencing
    • Parkhill, J., and Wren, B. (2011) Bacterial epidemiology and biology - lessons from genome sequencing. Genome Biol 12: 230.
    • (2011) Genome Biol , vol.12 , pp. 230
    • Parkhill, J.1    Wren, B.2
  • 47
    • 84867293252 scopus 로고    scopus 로고
    • GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research - an update
    • Peakall, R., and Smouse, P.E. (2012) GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research - an update. Bioinformatics 28: 2537-2539.
    • (2012) Bioinformatics , vol.28 , pp. 2537-2539
    • Peakall, R.1    Smouse, P.E.2
  • 48
    • 70249150750 scopus 로고    scopus 로고
    • Improved fireblight diagnostics using quantitative real-time PCR detection of Erwinia amylovora chromosomal DNA
    • Pirc, M., Ravnikar, M., Tomlinson, J., and Dreo, T. (2009) Improved fireblight diagnostics using quantitative real-time PCR detection of Erwinia amylovora chromosomal DNA. Plant Pathol 58: 872-881.
    • (2009) Plant Pathol , vol.58 , pp. 872-881
    • Pirc, M.1    Ravnikar, M.2    Tomlinson, J.3    Dreo, T.4
  • 49
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard, J.K., Stephens, M., and Donnelly, P. (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 50
    • 79958285933 scopus 로고    scopus 로고
    • Diversity, evolution and functionality of CRISPR regions in the fire blight pathogen Erwinia amylovora
    • Rezzonico, F., Smits, T.H.M., and Duffy, B. (2011) Diversity, evolution and functionality of CRISPR regions in the fire blight pathogen Erwinia amylovora. Appl Environ Microbiol 77: 3819-3829.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 3819-3829
    • Rezzonico, F.1    Smits, T.H.M.2    Duffy, B.3
  • 51
    • 84865778656 scopus 로고    scopus 로고
    • Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora
    • Rezzonico, F., Braun-Kiewnick, A., Mann, R.A., Rodoni, B., Goesmann, A., Duffy, B., and Smits, T.H.M. (2012) Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora. Mol Plant Pathol 13: 975-984.
    • (2012) Mol Plant Pathol , vol.13 , pp. 975-984
    • Rezzonico, F.1    Braun-Kiewnick, A.2    Mann, R.A.3    Rodoni, B.4    Goesmann, A.5    Duffy, B.6    Smits, T.H.M.7
  • 52
    • 1242351710 scopus 로고    scopus 로고
    • Genetic characterization of Erwinia amylovora strains by amplified fragment length polymorphism
    • Rico, A., Ortiz-Barredo, A., Ritter, E., and Murillo, J. (2004) Genetic characterization of Erwinia amylovora strains by amplified fragment length polymorphism. J Appl Microbiol 96: 302-310.
    • (2004) J Appl Microbiol , vol.96 , pp. 302-310
    • Rico, A.1    Ortiz-Barredo, A.2    Ritter, E.3    Murillo, J.4
  • 53
    • 0031734909 scopus 로고    scopus 로고
    • Instability of a pEA29 marker in Erwinia amylovora previously used for strain classification
    • Schnabel, E.L., and Jones, A.L. (1998) Instability of a pEA29 marker in Erwinia amylovora previously used for strain classification. Plant Dis 82: 1334-1336.
    • (1998) Plant Dis , vol.82 , pp. 1334-1336
    • Schnabel, E.L.1    Jones, A.L.2
  • 55
    • 77949295507 scopus 로고    scopus 로고
    • Complete genome sequence of the fire blight pathogen Erwinia amylovora CFBP 1430 and comparison to other Erwinia spp
    • Smits, T.H.M., Rezzonico, F., Kamber, T., Blom, J., Goesmann, A., Frey, J.E., and Duffy, B. (2010) Complete genome sequence of the fire blight pathogen Erwinia amylovora CFBP 1430 and comparison to other Erwinia spp. Mol Plant Microbe Interact 23: 384-393.
    • (2010) Mol Plant Microbe Interact , vol.23 , pp. 384-393
    • Smits, T.H.M.1    Rezzonico, F.2    Kamber, T.3    Blom, J.4    Goesmann, A.5    Frey, J.E.6    Duffy, B.7
  • 56
    • 3242881003 scopus 로고    scopus 로고
    • Exploring the concept of clonality in bacteria
    • Woodford, N., and Johnson, A. (eds). Clifton, NJ, USA: Humana Press.
    • Spratt, B. (2004) Exploring the concept of clonality in bacteria. In Genomics, Proteomics, and Clinical Bacteriology. Woodford, N., and Johnson, A. (eds). Clifton, NJ, USA: Humana Press, pp. 323-352.
    • (2004) Genomics, Proteomics, and Clinical Bacteriology , pp. 323-352
    • Spratt, B.1
  • 57
    • 0034798494 scopus 로고    scopus 로고
    • The relative contributions of recombination and point mutation to the diversification of bacterial clones
    • Spratt, B.G., Hanage, W.P., and Feil, E.J. (2001) The relative contributions of recombination and point mutation to the diversification of bacterial clones. Curr Opin Microbiol 4: 602-606.
    • (2001) Curr Opin Microbiol , vol.4 , pp. 602-606
    • Spratt, B.G.1    Hanage, W.P.2    Feil, E.J.3
  • 58
    • 84864043285 scopus 로고    scopus 로고
    • Use of antibiotics in plant agriculture
    • Stockwell, V.O., and Duffy, B. (2012) Use of antibiotics in plant agriculture. Rev Sci Tech 31: 199-210.
    • (2012) Rev Sci Tech , vol.31 , pp. 199-210
    • Stockwell, V.O.1    Duffy, B.2
  • 59
    • 84866175111 scopus 로고    scopus 로고
    • Genetic diversity among Bacillus anthracis soil isolates at fine geographic scales
    • Stratilo, C.W., and Bader, D.E. (2012) Genetic diversity among Bacillus anthracis soil isolates at fine geographic scales. Appl Environ Microbiol 78: 6433-6437.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 6433-6437
    • Stratilo, C.W.1    Bader, D.E.2
  • 60
    • 0037244915 scopus 로고    scopus 로고
    • Linkage disequilibrium between minisatellite loci supports clonal evolution of Mycobacterium tuberculosis in a high tuberculosis incidence area
    • Supply, P., Warren, R.M., Bañuls, A.-L., Lesjean, S., Van Der Spuy, G.D., Lewis, L.-A., etal. (2003) Linkage disequilibrium between minisatellite loci supports clonal evolution of Mycobacterium tuberculosis in a high tuberculosis incidence area. Mol Microbiol 47: 529-538.
    • (2003) Mol Microbiol , vol.47 , pp. 529-538
    • Supply, P.1    Warren, R.M.2    Bañuls, A.-L.3    Lesjean, S.4    Van Der Spuy, G.D.5    Lewis, L.-A.6
  • 62
    • 0345687900 scopus 로고    scopus 로고
    • Slipped-strand mispairing can function as a phase variation mechanism in Escherichia coli
    • Torres-Cruz, J., and van der Woude, M.W. (2003) Slipped-strand mispairing can function as a phase variation mechanism in Escherichia coli. J Bacteriol 185: 6990-6994.
    • (2003) J Bacteriol , vol.185 , pp. 6990-6994
    • Torres-Cruz, J.1    van der Woude, M.W.2
  • 63
    • 35448979227 scopus 로고    scopus 로고
    • Fine-scale genetic diversity among Burkholderia pseudomallei soil isolates in Northeast Thailand
    • U'Ren, J.M., Hornstra, H., Pearson, T., Schupp, J.M., Leadem, B., Georgia, S., etal. (2007) Fine-scale genetic diversity among Burkholderia pseudomallei soil isolates in Northeast Thailand. Appl Environ Microbiol 73: 6678-6681.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 6678-6681
    • U'Ren, J.M.1    Hornstra, H.2    Pearson, T.3    Schupp, J.M.4    Leadem, B.5    Georgia, S.6
  • 64
    • 33744982094 scopus 로고    scopus 로고
    • Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7
    • Vogler, A.J., Keys, C., Nemoto, Y., Colman, R.E., Jay, Z., and Keim, P. (2006) Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7. J Bacteriol 188: 4253-4263.
    • (2006) J Bacteriol , vol.188 , pp. 4253-4263
    • Vogler, A.J.1    Keys, C.2    Nemoto, Y.3    Colman, R.E.4    Jay, Z.5    Keim, P.6
  • 65
    • 33846661637 scopus 로고    scopus 로고
    • Mutations, mutation rates, and evolution at the hypervariable VNTR loci of Yersinia pestis
    • Vogler, A.J., Keys, C.E., Allender, C., Bailey, I., Girard, J., Pearson, T., etal. (2007) Mutations, mutation rates, and evolution at the hypervariable VNTR loci of Yersinia pestis. Mutat Res 616: 145-158.
    • (2007) Mutat Res , vol.616 , pp. 145-158
    • Vogler, A.J.1    Keys, C.E.2    Allender, C.3    Bailey, I.4    Girard, J.5    Pearson, T.6
  • 66
    • 0025923821 scopus 로고
    • Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material
    • Walsh, P.S., Metzger, D.A., and Higuchi, R. (1991) Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10: 506-513.
    • (1991) Biotechniques , vol.10 , pp. 506-513
    • Walsh, P.S.1    Metzger, D.A.2    Higuchi, R.3
  • 67
    • 75949130661 scopus 로고    scopus 로고
    • Molecular signature of differential virulence in natural isolates of Erwinia amylovora
    • Wang, D., Korban, S.S., and Zhao, Y. (2010) Molecular signature of differential virulence in natural isolates of Erwinia amylovora. Phytopathology 100: 192-198.
    • (2010) Phytopathology , vol.100 , pp. 192-198
    • Wang, D.1    Korban, S.S.2    Zhao, Y.3
  • 68
    • 27144475363 scopus 로고    scopus 로고
    • The role of Dam methylation in phase variation of Haemophilus influenzae genes involved in defence against phage infection
    • Zaleski, P., Wojciechowski, M., and Piekarowicz, A. (2005) The role of Dam methylation in phase variation of Haemophilus influenzae genes involved in defence against phage infection. Microbiology 151: 3361-3369.
    • (2005) Microbiology , vol.151 , pp. 3361-3369
    • Zaleski, P.1    Wojciechowski, M.2    Piekarowicz, A.3
  • 69
    • 0030722569 scopus 로고    scopus 로고
    • Differentiation of Erwinia amylovora strains by pulsed-field gel electrophoresis
    • Zhang, Y., and Geider, K. (1997) Differentiation of Erwinia amylovora strains by pulsed-field gel electrophoresis. Appl Environ Microbiol 63: 4421-4426.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4421-4426
    • Zhang, Y.1    Geider, K.2


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