Differentiation of Erwinia amylovora and Erwinia pyrifoliae strains with single nucleotide polymorphisms and by synthesis of dihydrophenylalanine

Current Microbiology

Volumn 65, Issue 1, 2012, Pages 73-84

  Gehring, I ^a,b   Geider, K ^a  

^a INSTITUTE FOR EPIDEMIOLOGY AND PATHOGEN DIAGNOSTICS   (Germany)

^b UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DIHYDROPHENYLALANINE; PHENYLALANINE DERIVATIVE; UNCLASSIFIED DRUG;

ACRB GENE; AMINO ACID SYNTHESIS; ANTIBIOSIS; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL METABOLISM; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CONTROLLED STUDY; ERWINIA; ERWINIA AMYLOVORA; ERWINIA PYRIFOLIAE; FIRE BLIGHT; GALE GENE; GENOME ANALYSIS; GEOGRAPHIC ORIGIN; GROWTH INHIBITION; HRPA GENE; JAPAN; KOREA; NONHUMAN; NORTH AMERICA; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RASPBERRY; RHODOTORULA GLUTINIS; SINGLE NUCLEOTIDE POLYMORPHISM; SINGLE STRAND CONFORMATION POLYMORPHISM; STRAIN DIFFERENCE; THIN LAYER CHROMATOGRAPHY; TREE;

BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; BASE SEQUENCE; CYCLOHEXENES; ERWINIA; ERWINIA AMYLOVORA; MOLECULAR SEQUENCE DATA; PHENYLALANINE; PHYLOGENY; PLANT DISEASES; PLANTS; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE;

ERWINIA AMYLOVORA; ERWINIA PYRIFOLIAE; MALOIDEAE; RHODOTORULA GLUTINIS; RUBUS; RUBUS GLAUCUS;

EID: 84862761617     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-012-0116-5     Document Type: Article

References (39)

1. M Achtman 2008 Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens Annu Rev Microbiol 62 53 70 18785837 10.1146/annurev.micro.62.081307.162832 1:CAS:528:DC%2BD1cXht1Gls7zM
2. JE Asselin JM Bonasera JF Kim CS Oh SV Beer 2011 Eop1 from a Rubus strain of Erwinia amylovora functions as a host-range limiting factor Phytopathology 101 935 944 21469934 10.1094/PHYTO-12-10-0339 1:CAS:528:DC%2BC3MXhtVOnurvM
3. D Barionovi S Giorgi AR Stoeger W Ruppitsch M Scortichini 2006 Characterization of Erwinia amylovora strains from different host plants using repetitive-sequences PCR analysis, and restriction fragment length polymorphism and short-sequence DNA repeats of plasmid pEA29 J Appl Microbiol 100 1084 1094 16630009 10.1111/j.1365-2672.2006.02813.x 1:CAS:528:DC%2BD28XlvVamt7w%3D
4. S Bereswill S Jock P Aldridge JD Janse K Geider 1997 Molecular characterization of natural Erwinia amylovora strains deficient in levan synthesis Physiol Mol Plant Pathol 51 215 225 10.1006/pmpp.1997.0117 1:CAS:528:DyaK1cXhs1aitLc%3D
5. S Bereswill S Jock P Bellemann K Geider 1998 Identification of Erwinia amylovora by growth morphology on agar containing copper sulfate and by capsule staining with lectin Plant Dis 82 158 164 10.1094/PDIS.1998.82.2.158
6. P Bugert K Geider 1995 Molecular analysis of the ams operon required for exopolysaccharide synthesis of Erwinia amylovora Mol Microbiol 15 917 933 7596293 10.1111/j.1365-2958.1995.tb02361.x 1:CAS:528:DyaK2MXkvVaru78%3D
7. P Bugert A Lese J Meckies W Zieger H Eichler H Kluter 2003 Optimized sensitivity of allele-specific PCR for prenatal typing of human platelet alloantigen single nucleotide polymorphisms Biotechniques 35 170 174 12866418 1:CAS:528:DC%2BD3sXlsVOgtrk%3D
8. A Burse H Weingart MS Ullrich 2004 The phytoalexin-inducible multidrug efflux pump AcrAB contributes to virulence in the fire blight pathogen, Erwinia amylovora Mol Plant Microbe Interact 17 43 54 14714867 10.1094/MPMI.2004.17.1.43 1:CAS:528:DC%2BD2cXivVSltr0%3D
9. R Busson A De Bruyn P Herdewijn M Maes E Messens 2001 Identification of the exopolysaccharide amylovoran by NMR J Carbohydr Chem 20 109 120 10.1081/CAR-100103952 1:CAS:528:DC%2BD3MXltVGqtb0%3D
10. WR Easterday MN Van Ert TS Simonson DM Wagner LJ Kenefic CJ Allender P Keim 2005 Use of single nucleotide polymorphisms in the plcR gene for specific identification of Bacillus anthracis J Clin Microbiol 43 1995 1997 15815042 10.1128/JCM.43.4.1995-1997.2005 1:CAS:528:DC%2BD2MXjvF2ktLo%3D
11. H Falkenstein P Bellemann S Walter W Zeller K Geider 1988 Identification of Erwinia amylovora, the Fireblight pathogen, by colony hybridization with DNA from plasmid pEA29 Appl Environ Microbiol 54 2798 2802 16347778 1:CAS:528:DyaL1MXjsVOrtA%3D%3D
12. GJ Feistner 1988 Secondary metabolites of Erwinia: (L)-2,5- dihydrophenylalanine from the fireblight pathogen Erwinia amylovora Phytochemistry 27 3417 3422 10.1016/0031-9422(88)80741-6 1:CAS:528: DyaL1MXhsFWntrw%3D
13. BD Freeman TG Buchman S McGrath AR Tabrizi BA Zehnbauer 2002 Template-directed dye-terminator incorporation with fluorescence polarization detection for analysis of single nucleotide polymorphisms implicated in sepsis J Mol Diagn 4 209 215 12411588 10.1016/S1525-1578(10)60705-2 1:CAS:528: DC%2BD38Xps1Khtro%3D
14. K Geider G Auling Z Du V Jakovljevic S Jock B Volksch 2006 Erwinia tasmaniensis sp. nov., a non-phytopathogenic bacterium from apple and pear trees Int J Syst Evol Microbiol 56 2937 2943 17159002 10.1099/ijs.0.64032-0 1:CAS:528:DC%2BD2sXhtVWmt7c%3D
15. E Hienonen M Romantschuk F Fenel S Taira 2007 Transcript stabilization by mRNA sequences from hrpA of Pseudomonas syringae J Biotechnol 128 258 267 17125870 10.1016/j.jbiotec.2006.10.010 1:CAS:528:DC%2BD2sXkvFGiug%3D%3D
16. F Hommais S Pereira C Acquaviva P Escobar-Paramo E Denamur 2005 Single-nucleotide polymorphism phylotyping of Escherichia coli Appl Environ Microbiol 71 4784 4792 16085876 10.1128/AEM.71.8.4784-4792.2005 1:CAS:528:DC%2BD2MXoslGhs7g%3D
17. JD Hurley LJ Engle JT Davis AM Welsh JE Landers 2004 A simple, bead-based approach for multi-SNP molecular haplotyping Nucleic Acids Res 32 e186 10.1093/nar/gnh187
18. S Jock V Donat MM Lopez C Bazzi K Geider 2002 Following spread of fire blight in Western, Central and Southern Europe by molecular differentiation of Erwinia amylovora strains with PFGE analysis Environ Microbiol 4 106 114 11972620 10.1046/j.1462-2920.2002.00277.x
19. S Jock K Geider 2004 Molecular differentiation of Erwinia amylovora strains from North America and of two Asian pear pathogens by analyses of PFGE patterns and hrpN genes Environ Microbiol 6 480 490 15049921 10.1111/j.1462-2920.2004.00583.x 1:CAS:528:DC%2BD2cXkt1Kgtro%3D
20. S Jock B Rodoni M Gillings WS Kim C Copes P Merriman K Geider 2000 Screening of ornamental plants from the Botanic Gardens of Melbourne and Adelaide for the occurrence of Erwinia amylovora Aust Plant Pathol 29 120 128 10.1071/AP00020
21. WS Kim K Geider 1999 Analysis of variable short-sequence DNA repeats on the 29 kb plasmid of Erwinia amylovora strains Eur J Plant Pathol 105 703 713 10.1023/A:1008723717211 1:CAS:528:DC%2BD3cXls1Ogtg%3D%3D
22. WS Kim M Hildebrand S Jock K Geider 2001 Molecular comparison of pathogenic bacteria from pear trees in Japan and the fire blight pathogen Erwinia amylovora Microbiology 147 2951 2959 11700346 1:CAS:528: DC%2BD3MXos1ejt7k%3D
23. WS Kim S Jock JP Paulin SL Rhim K Geider 2001 Molecular detection and differentiation of Erwinia pyrifoliae and host range analysis of the Asian pear pathogen Plant Dis 85 1183 1188 10.1094/PDIS.2001.85.11.1183 1:CAS:528:DC%2BD3MXotlGksL0%3D
24. PS McManus AL Jones 1995 Genetic fingerprinting of Erwinia amylovora strains isolated from tree-fruit crops and Rubus spp Phytopathology 85 1547 1553 10.1094/Phyto-85-1547 1:CAS:528:DyaK28XhtFWhs7o%3D
25. J Mergaert L Hauben MC Cnockaert J Swings 1999 Reclassification of non-pigmented Erwinia herbicola strains from trees as Erwinia billingiae sp. nov Int J Syst Bacteriol 49 377 383 10319458 10.1099/00207713-49-2-377
26. M Metzger P Bellemann P Bugert K Geider 1994 Genetics of galactose metabolism of Erwinia amylovora and its influence on polysaccharide synthesis and virulence of the fire blight pathogen J Bacteriol 176 450 459 7507102 1:CAS:528:DyaK2cXhsFyns78%3D
27. M Metzger P Bellemann T Schwartz K Geider 1992 Site-directed and transposon-mediated mutagenesis with pfd-plasmids by electroporation of Erwinia amylovora and Escherichia coli cells Nucleic Acids Res 20 2265 2270 1317549 10.1093/nar/20.9.2265 1:CAS:528:DyaK38XksVWmsb4%3D
28. M Mohammadi E Moltmann W Zeller K Geider 2009 Characterisation of naturally occurring Erwinia amylovora strains lacking the common plasmid pEA29 and their detection with real-time PCR Eur J Plant Pathol 124 293 302 10.1007/s10658-008-9417-8 1:CAS:528:DC%2BD1MXlsFWgt78%3D
29. S Murakami R Nakashima E Yamashita A Yamaguchi 2002 Crystal structure of bacterial multidrug efflux transporter AcrB Nature 419 587 593 12374972 10.1038/nature01050 1:CAS:528:DC%2BD38Xns1Ontr0%3D
30. S Nair TK Lin T Pang M Altwegg 2002 Characterization of Salmonella serovars by PCR-single-strand conformation polymorphism analysis J Clin Microbiol 40 2346 2351 12089246 10.1128/JCM.40.7.2346-2351.2002 1:CAS:528:DC%2BD38XlvVSrs74%3D
31. SL Rhim B Volksch L Gardan JP Paulin C Langlotz WS Kim K Geider 1999 Erwinia pyrifoliae, an Erwinia species different from Erwinia amylovora, causes a necrotic disease of Asian pear trees Plant Pathol 48 514 520 10.1046/j.1365-3059.1999.00376.x 1:CAS:528:DyaK1MXmt12hsLs%3D
32. S Sauer A Freiwald T Maier M Kube R Reinhardt M Kostrzewa K Geider 2008 Classification and identification of bacteria by mass spectrometry and computational analysis PLoS ONE 3 e2843 18665227 10.1371/journal.pone.0002843
33. Schollmeyer M (2002) Exopolysaccharide von phytopathogenen Bakterien der Gattung Erwinia. PhD thesis University of Heidelberg, Heidelberg, Germany
34. T Schwartz F Bernhard R Theiler K Geider 1991 Diversity of the fire blight pathogen in production of dihydrophenylalanine, a virulence factor of some Erwinia amylovora strains Phytopathology 81 873 878 10.1094/Phyto-81-873 1:CAS:528:DyaK3MXlsl2htrs%3D
35. R Shen JB Fan D Campbell W Chang J Chen D Doucet J Yeakley M Bibikova E Wickham Garcia C McBride F Steemers F Garcia BG Kermani K Gunderson A Oliphant 2005 High-throughput SNP genotyping on universal bead arrays Mutat Res 573 70 82 15829238 10.1016/j.mrfmmm.2004.07.022 1:CAS:528:DC%2BD2MXjt1Wisr4%3D
36. SY Tartof OD Solberg LW Riley 2007 Genotypic analyses of uropathogenic Escherichia coli based on fimH single nucleotide polymorphisms (SNPs) J Med Microbiol 56 1363 1369 17893175 10.1099/jmm.0.47262-0 1:CAS:528: DC%2BD2sXhtlekur%2FE
37. T Yamashit N Miyairi K Kunugita K Shimizu H Sakai 1970 L-1,4-cyclohexadiene-1-alanine, an antagonist of phenylalanine, from Streptomyces J Antibiot 23 537 541 10.7164/antibiotics.23.537
38. Y You BG Moreira MA Behlke R Owczarzy 2006 Design of LNA probes that improve mismatch discrimination Nucleic Acids Res 34 e60 16670427 10.1093/nar/gkl175
39. Y Zhang K Geider 1997 Differentiation of Erwinia amylovora strains by pulsed-field gel electrophoresis Appl Environ Microbiol 63 4421 4426 9361429 1:STN:280:DyaK1c%2Fislersg%3D%3D