메뉴 건너뛰기




Volumn 5, Issue , 2004, Pages

Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains: A web-based resource

Author keywords

[No Author keywords available]

Indexed keywords

AMPLIFICATION PRODUCTS; BACTERIAL PATHOGENS; BACTERIAL SPECIES; BACTERIAL STRAINS; GENERIC TECHNOLOGY; GENOME SEQUENCE DATA; STRAIN IDENTIFICATION; WEB-BASED RESOURCES;

EID: 2942542734     PISSN: 14712105     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2105-5-4     Document Type: Article
Times cited : (95)

References (47)
  • 1
    • 0038414878 scopus 로고    scopus 로고
    • High-throughput epidemiologic typing in clinical microbiology
    • van Belkum A: High-throughput epidemiologic typing in clinical microbiology. Clin Microbiol Infect 2003, 9:86-100.
    • (2003) Clin. Microbiol. Infect. , vol.9 , pp. 86-100
    • van Belkum, A.1
  • 3
    • 12244289618 scopus 로고    scopus 로고
    • Genomewide analysis of synonymous single nucleotide polymorphisms in Mycobacterium tuberculosis complex organisms: Resolution of genetic relationships among closely related microbial strains
    • Gutacker MM, Smoot JC, Migliaccio CA, Ricklefs SM, Hua S, Cousins DV, Graviss EA, Shashkina E, Kreiswirth BN, Musser JM: Genomewide analysis of synonymous single nucleotide polymorphisms in Mycobacterium tuberculosis complex organisms: resolution of genetic relationships among closely related microbial strains. Genetics 2002, 162:1533-43.
    • (2002) Genetics , vol.162 , pp. 1533-1543
    • Gutacker, M.M.1    Smoot, J.C.2    Migliaccio, C.A.3    Ricklefs, S.M.4    Hua, S.5    Cousins, D.V.6    Graviss, E.A.7    Shashkina, E.8    Kreiswirth, B.N.9    Musser, J.M.10
  • 6
    • 0031750390 scopus 로고    scopus 로고
    • Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats
    • Frothingham R, Meeker-O'Connell WA: Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats. Microbiology 1998, 144:1189-1196.
    • (1998) Microbiology , vol.144 , pp. 1189-1196
    • Frothingham, R.1    Meeker-O'Connell, W.A.2
  • 7
  • 10
    • 0042956726 scopus 로고    scopus 로고
    • High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing
    • Le Flèche P, Fabre M, Denoeud F, Koeck JL, Vergnaud G: High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing. BMC Microbiol 2002, 2:37.
    • (2002) BMC Microbiol. , vol.2 , pp. 37
    • Le Flèche, P.1    Fabre, M.2    Denoeud, F.3    Koeck, J.L.4    Vergnaud, G.5
  • 11
    • 0021275367 scopus 로고
    • Small DNA deletions creating avirulence in Streptococcus pyogenes
    • Spanier JG, Jones SJ, Cleary P: Small DNA deletions creating avirulence in Streptococcus pyogenes. Science 1984, 225:935-8.
    • (1984) Science , vol.225 , pp. 935-938
    • Spanier, J.G.1    Jones, S.J.2    Cleary, P.3
  • 12
    • 0023195918 scopus 로고
    • Size variation in group A streptococcal M protein is generated by homologous recom bination between intragenic repeats
    • Hollingshead SK, Fischetti VA, Scott JR: Size variation in group A streptococcal M protein is generated by homologous recom bination between intragenic repeats. Mol Gen Genet 1987, 207:196-203.
    • (1987) Mol. Gen. Genet. , vol.207 , pp. 196-203
    • Hollingshead, S.K.1    Fischetti, V.A.2    Scott, J.R.3
  • 15
    • 0037371272 scopus 로고    scopus 로고
    • Polymorphism in the collagen-like region of the Bacillus anthracis BclA protein leads to variation in exosporium filament length
    • Sylvestre P, Couture-Tosi E, Mock M: Polymorphism in the collagen-like region of the Bacillus anthracis BclA protein leads to variation in exosporium filament length. J Bacteriol 2003, 185:1555-63.
    • (2003) J. Bacteriol. , vol.185 , pp. 1555-1563
    • Sylvestre, P.1    Couture-Tosi, E.2    Mock, M.3
  • 16
    • 0034796701 scopus 로고    scopus 로고
    • Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units
    • Supply P, Lesjean S, Savine E, Kremer K, van Soolingen D, Locht C: Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units. J Clin Microbiol 2001, 39:3563-3571.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 3563-3571
    • Supply, P.1    Lesjean, S.2    Savine, E.3    Kremer, K.4    van Soolingen, D.5    Locht, C.6
  • 17
    • 0033865403 scopus 로고    scopus 로고
    • Minisatellites: Mutability and Genome Architecture
    • Vergnaud G, Denoeud F: Minisatellites: Mutability and Genome Architecture. Genome Res 2000, 10:899-907.
    • (2000) Genome Res. , vol.10 , pp. 899-907
    • Vergnaud, G.1    Denoeud, F.2
  • 18
    • 0038629278 scopus 로고    scopus 로고
    • Characterization of a Tandem Repeat Polymorphism in Legionella pneumophila and Its Use for Genotyping
    • Pourcel C, Vidgop Y, Ramisse F, Vergnaud G, Tram C: Characterization of a Tandem Repeat Polymorphism in Legionella pneumophila and Its Use for Genotyping. J Clin Microbiol 2003, 41:1819-1826.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 1819-1826
    • Pourcel, C.1    Vidgop, Y.2    Ramisse, F.3    Vergnaud, G.4    Tram, C.5
  • 19
    • 0242677631 scopus 로고    scopus 로고
    • Evaluation of the polymorphisms associated with tandem repeats for Pseudomonas aeruginosa strain typing
    • Onteniente L, Brisse S, Tassios PT, Vergnaud G: Evaluation of the polymorphisms associated with tandem repeats for Pseudomonas aeruginosa strain typing. J Clin Microbiol 2003, 41:4991-7.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 4991-4997
    • Onteniente, L.1    Brisse, S.2    Tassios, P.T.3    Vergnaud, G.4
  • 20
    • 84874658322 scopus 로고    scopus 로고
    • GOLD Genomes OnLine Database
    • GOLD Genomes OnLine Database [http://ergo.integratedgenomics.com/GOLD/]
  • 21
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • Benson G: Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 1999, 27:573-580.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 573-580
    • Benson, G.1
  • 22
    • 84885690253 scopus 로고    scopus 로고
    • The Tandem Repeats Finder
    • The Tandem Repeats Finder [http://tandem.bu.edu/trf/trf.html]
  • 23
    • 0038444067 scopus 로고    scopus 로고
    • Predicting Human Minisatellite Polymorphism
    • Denoeud F, Vergnaud G, Benson G: Predicting Human Minisatellite Polymorphism. Genome Res 2003, 13:856-867.
    • (2003) Genome Res. , vol.13 , pp. 856-867
    • Denoeud, F.1    Vergnaud, G.2    Benson, G.3
  • 24
    • 84874653315 scopus 로고    scopus 로고
    • The ActiveState Programmer Network (ASPN) ActivePerl download page
    • The ActiveState Programmer Network (ASPN) ActivePerl download page [http://www.activestate.com/products/ActivePerl]
  • 26
    • 84874663027 scopus 로고    scopus 로고
    • The NCBI BLAST ftp site
    • The NCBI BLAST ftp site [ftp://ftp.ncbi.nih.gov/blast/]
  • 27
    • 84872264336 scopus 로고    scopus 로고
    • The tandem repeats database
    • The tandem repeats database [http://minisatellites.u-psud.fr]
  • 28
    • 84885685795 scopus 로고    scopus 로고
    • The Strain Comparison Page
    • The Strain Comparison Page [http://minisatellites.u-psud.fr/comparison]
  • 36
    • 84885681646 scopus 로고    scopus 로고
    • The Blast in the tandem repeats database page
    • The Blast in the tandem repeats database page [http://minisatellites.u-psud.fr/Blast]
  • 37
    • 84885683196 scopus 로고    scopus 로고
    • The Bacterial Genotyping Page
    • The Bacterial Genotyping Page [http://bacterial-genotyping.igmors.u-psud.fr]
  • 41
    • 3042531125 scopus 로고    scopus 로고
    • Brucella 'Hoof-Prints': Strain typing by multi-locus analysis of variable number tandem repeats (VNTRs)
    • Bricker BJ, Ewalt DR, Halling SM: Brucella 'Hoof-Prints': strain typing by multi-locus analysis of variable number tandem repeats (VNTRs). BMC Microbiol 2003, 3:15.
    • (2003) BMC Microbiol. , vol.3 , pp. 15
    • Bricker, B.J.1    Ewalt, D.R.2    Halling, S.M.3
  • 46
    • 0030791788 scopus 로고    scopus 로고
    • Two distinct models account for short and long deletions within sequence repeats in Escherichia coli
    • Schumacher S, Fuchs RP, Bichara M: Two distinct models account for short and long deletions within sequence repeats in Escherichia coli. J Bacteriol 1997, 179:6512-7.
    • (1997) J. Bacteriol. , vol.179 , pp. 6512-6517
    • Schumacher, S.1    Fuchs, R.P.2    Bichara, M.3
  • 47
    • 0033972220 scopus 로고    scopus 로고
    • The length of a tetranucleotide repeat tract in Haemophilus influenzae determines the phase variation rate of a gene with homology to type III DNA methyltransferases
    • De Bolle X, Bayliss CD, Field D, van de Ven T, Saunders NJ, Hood DW, Moxon ER: The length of a tetranucleotide repeat tract in Haemophilus influenzae determines the phase variation rate of a gene with homology to type III DNA methyltransferases. Mol Microbiol 2000, 35:211-22.
    • (2000) Mol. Microbiol. , vol.35 , pp. 211-222
    • De Bolle, X.1    Bayliss, C.D.2    Field, D.3    van de Ven, T.4    Saunders, N.J.5    Hood, D.W.6    Moxon, E.R.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.