Novel bioinformatics method for identification of genome-wide non-canonical spliced regions using RNA-Seq data

PLoS ONE

Volumn 9, Issue 7, 2014, Pages

  Bai, Yongsheng ^a,c   Hassler, Justin ^b   Ziyar, Ahdad ^b   Li, Philip ^b   Wright, Zachary ^a   Menon, Rajasree ^a   Omenn, Gilbert S ^a,d,e   Cavalcoli, James D ^a   Kaufman, Randal J ^b   Sartor, Maureen A ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

^b BURNHAM INSTITUTE   (United States)

^c UNIVERSITY OF WISCONSIN MADISON   (United States)

^d UNIVERSITY OF MICHIGAN SCHOOL OF PUBLIC HEALTH   (United States)

^e INSTITUTE FOR SYSTEMS BIOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

X BOX BINDING PROTEIN 1; DNA BINDING PROTEIN; ERN1 PROTEIN, MOUSE; PROTEIN SERINE THREONINE KINASE; REGULATORY FACTOR X TRANSCRIPTION FACTORS; RIBONUCLEASE; TRANSCRIPTION FACTOR;

ANIMAL CELL; ARTICLE; BIOINFORMATICS; CANCER CELL LINE; CHROMOSOME 17; CONTROLLED STUDY; EMBRYO; ENDOPLASMIC RETICULUM STRESS; FIBROBLAST CULTURE; GENE; GENE IDENTIFICATION; GENE TARGETING; GENOME ANALYSIS; HUMAN; HUMAN CELL; INTRON; IRE1 ALPHA GENE; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; READ SPLIT WALK PIPELINE; RNA SEQUENCE; RNA SPLICING; SENSITIVITY ANALYSIS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; XBP1 GENE; ANIMAL; CELL LINE; COMPUTER PROGRAM; GENETICS; GENOMICS; HETEROZYGOTE; KNOCKOUT MOUSE; MOLECULAR GENETICS; PROCEDURES; TUMOR CELL LINE;

ANIMALS; BASE SEQUENCE; CELL LINE; CELL LINE, TUMOR; DNA-BINDING PROTEINS; ENDOPLASMIC RETICULUM STRESS; ENDORIBONUCLEASES; GENOMICS; HETEROZYGOTE; HUMANS; INTRONS; MICE; MICE, KNOCKOUT; MOLECULAR SEQUENCE DATA; PROTEIN-SERINE-THREONINE KINASES; RNA SPLICING; SOFTWARE; TRANSCRIPTION FACTORS;

EID: 84903774348     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0100864     Document Type: Article

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