PASTA: Splice junction identification from RNA-Sequencing data

BMC Bioinformatics

Volumn 14, Issue , 2013, Pages

  Tang, Shaojun ^a,b,c   Riva, Alberto ^a,b  

^a UNIVERSITY OF FLORIDA COLLEGE OF MEDICINE   (United States)

^b UNIVERSITY OF FLORIDA   (United States)

^c BOSTON CHILDREN S HOSPITAL   (United States)

Author keywords

Alternative splicing; Computational analysis of alternative splicing; Next generation sequencing; RNA Seq

Indexed keywords

ALTERNATIVE SPLICING; COMPUTATIONAL ANALYSIS; EXPRESSION LEVELS; NEXT-GENERATION SEQUENCING; PAIRED-END READS; RNA-SEQ; SIMULATED DATASETS; TRANSCRIPTOME ANALYSIS;

ALIGNMENT; REGRESSION ANALYSIS;

RNA;

ALGORITHM; ALTERNATIVE RNA SPLICING; ANIMAL; ARTICLE; COMPUTER PROGRAM; GENE EXPRESSION PROFILING; HIGH THROUGHPUT SEQUENCING; METHODOLOGY; MOUSE; RNA SPLICING; SEQUENCE ANALYSIS; STATISTICAL MODEL;

ALGORITHMS; ALTERNATIVE SPLICING; ANIMALS; GENE EXPRESSION PROFILING; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; LOGISTIC MODELS; MICE; RNA SPLICE SITES; SEQUENCE ANALYSIS, RNA; SOFTWARE;

EID: 84875689118     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-14-116     Document Type: Article

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