A first step toward completion of a genome-wide characterization of the human proteome

Journal of Proteome Research

Volumn 12, Issue 1, 2013, Pages 1-5

  Marko Varga, Gyorgy ^a   Omenn, Gilbert S ^b   Paik, Young Ki ^c   Hancock, William S ^d  

^a LUND UNIVERSITY   (Sweden)

^b UNIVERSITY OF MICHIGAN   (United States)

^c Yonsei University   (South Korea)

^d NORTHEASTERN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOKERATIN; PROTEOME; REGULATOR PROTEIN;

ALTERNATIVE RNA SPLICING; GENOME ANALYSIS; GENOMICS; HAPLOTYPE; HUMAN; HUMAN CHROMOSOME; IMMUNOHISTOCHEMISTRY; MASS SPECTROMETRY; METABOLOMICS; MOLECULAR BIOLOGY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEOMICS; REVIEW; TRANSCRIPTOMICS;

CHROMOSOMES; GENE EXPRESSION; GENOME, HUMAN; HUMAN GENOME PROJECT; HUMANS; PROTEOME;

EID: 84874066401     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr301183a     Document Type: Review

References (11)

1. Legrain, P.; Aebersold, R.; Archakov, A.; Bairoch, A.; Bala, K. The Human Proteome Project current state and future direction. Mol. Cell. Proteomics 2011, 10, No. M111.009993.
2. Paik, Y. K.; Jeong, S. K.; Omenn, G. S.; Uhlen, M.; Hanash, S.; et al. The Chromosome-Centric Human Proteome Project forcataloging proteins encoded in the genome. Nat. Biotechnol. 2012, 30 (3), 221-3.
3. Paik, Y. K.; Omenn, G. S.; Uhlen, M.; Hanash, S.; Marko-Varga, G.; et al. Standard guidelines for the Chromosome-centric Human Proteome Project. J. Proteome Res. 2012, 11, 2005-13.
4. ENCODE Consortium.. An integrated encyclopedia of DNA elements in the human genome. Nature 2012, 489, 57-74.
5. Paik, Y. K.; Hancock, W. S. Uniting ENCODE with genome-wide proteomics. Nat. Biotechnol. 2012, 30, 1065-7.
6. Farrah T.; Deutsch, E. W.; Omenn, G. S.; Campbell, D. S.; Sun, Z. A high-confidence human plasma proteome reference set with estimated concentrations in peptideatlas. Mol. Cell. Proteomics 2011, No. M110.006353.
7. Uhlen, M.; Oksvold, P.; Fagerberg, L.; Lundberg, E.; Jonasson, K.; et al. Towards a knowledge-based Human Protein Atlas. Nat. Biotechnol. 2010, 28 (12), 1248-50.
8. Geiger, T.; Wehner, A.; Schaab, C.; Cox, J.; Mann, M. Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins. Mol. Cell. Proteomics 2012, 11, No. M111.014050.
9. Schaab, C.; Geiger, T.; Stoehr, G.; Cox, J.; Mann, M. Analysis of high-accuracy, quantitative proteomics data in the MaxQB database. Mol. Cell. Proteomics 2012, 11, No. M111.014068.
10. Nagaraj, N.; Wisniewski, J. R.; Geiger, T.; Cox, J.; Kircher, M.; et al. Deep proteome and transcriptome mapping of a human cancer line. Mol. Syst. Biol. 2011, 7, 548.
11. Beck, M.; Schmidt, A.; Malmstroem, J.; Claassen, M.; Ori, A.; et al. The quantitative proteome of a human cell line. Mol. Syst. Biol. 2011, DOI: 10.1038/msb2011.82.