-
1
-
-
33847353484
-
Are People Aware of Their HIV-positive Status Responsible for Driving the Epidemic in Sub-Saharan Africa? the Case of Malawi
-
E. U. Morah Are People Aware of Their HIV-positive Status Responsible for Driving the Epidemic in Sub-Saharan Africa? The Case of Malawi Dev. Policy Rev. 2007 25 215 242
-
(2007)
Dev. Policy Rev.
, vol.25
, pp. 215-242
-
-
Morah, E.U.1
-
2
-
-
73549103358
-
The development of antiretroviral therapy and its impact on the HIV-1/AIDS pandemic
-
S. Broder The development of antiretroviral therapy and its impact on the HIV-1/AIDS pandemic Antiviral Res. 2010 85 1 18
-
(2010)
Antiviral Res.
, vol.85
, pp. 1-18
-
-
Broder, S.1
-
3
-
-
20044364593
-
Review: Mixing new cocktails: Drug interactions in antiretroviral regimens
-
B. Young Review: mixing new cocktails: drug interactions in antiretroviral regimens AIDS Patient Care ST. 2005 19 286 297
-
(2005)
AIDS Patient Care ST.
, vol.19
, pp. 286-297
-
-
Young, B.1
-
4
-
-
73549088038
-
Nucleoside and nucleotide HIV reverse transcriptase inhibitors: 25 years after zidovudine
-
T. Cihlar A. S. Ray Nucleoside and nucleotide HIV reverse transcriptase inhibitors: 25 years after zidovudine Antiviral Res. 2010 85 39 58
-
(2010)
Antiviral Res.
, vol.85
, pp. 39-58
-
-
Cihlar, T.1
Ray, A.S.2
-
5
-
-
73549115378
-
Non-nucleoside reverse transcriptase inhibitors (NNRTIs), their discovery, development, and use in the treatment of HIV-1 infection: A review of the last 20 years (1989-2009)
-
M.-P. de Bethune Non-nucleoside reverse transcriptase inhibitors (NNRTIs), their discovery, development, and use in the treatment of HIV-1 infection: A review of the last 20 years (1989-2009) Antiviral Res. 2010 85 75 90
-
(2010)
Antiviral Res.
, vol.85
, pp. 75-90
-
-
De Bethune, M.-P.1
-
7
-
-
0242354002
-
Molecular impact of the M184V mutation in human immunodeficiency virus type 1 reverse transcriptase
-
K. Diallo M. Gotte M. A. Wainberg Molecular impact of the M184V mutation in human immunodeficiency virus type 1 reverse transcriptase Antimicrob. Agents Chemother. 2003 47 3377 3383
-
(2003)
Antimicrob. Agents Chemother.
, vol.47
, pp. 3377-3383
-
-
Diallo, K.1
Gotte, M.2
Wainberg, M.A.3
-
8
-
-
33750479074
-
The M184V mutation: What it does, how to prevent it, and what to do with it when it's there
-
J. E. Gallant The M184V mutation: what it does, how to prevent it, and what to do with it when it's there AIDS Read. 2006 16 556 559
-
(2006)
AIDS Read.
, vol.16
, pp. 556-559
-
-
Gallant, J.E.1
-
10
-
-
0038778479
-
The role of 2′,3′-unsaturation on the antiviral activity of anti-HIV nucleosides against 3TC-resistant mutant (M184V)
-
H. Choo Y. H. Chong C. K. Chu The role of 2′,3′-unsaturation on the antiviral activity of anti-HIV nucleosides against 3TC-resistant mutant (M184V) Bioorg. Med. Chem. Lett. 2003 13 1993 1996
-
(2003)
Bioorg. Med. Chem. Lett.
, vol.13
, pp. 1993-1996
-
-
Choo, H.1
Chong, Y.H.2
Chu, C.K.3
-
12
-
-
0036124432
-
The M184V mutation reduces the selective excision of zidovudine 5′-monophosphate (AZTMP) by the reverse transcriptase of human immunodeficiency virus type 1
-
P. L. Boyer S. G. Sarafianos E. Arnold S. H. Hughes The M184V mutation reduces the selective excision of zidovudine 5′-monophosphate (AZTMP) by the reverse transcriptase of human immunodeficiency virus type 1 J. Virol. 2002 76 3248 3256
-
(2002)
J. Virol.
, vol.76
, pp. 3248-3256
-
-
Boyer, P.L.1
Sarafianos, S.G.2
Arnold, E.3
Hughes, S.H.4
-
13
-
-
84872336044
-
Comparison of the Molecular Dynamics and Calculated Binding Free Energies for Nine FDA-Approved HIV-1 PR Drugs Against Subtype B and C-SA HIV PR
-
S. M. Ahmed H. G. Kruger T. Govender G. E. M. Maguire Y. Sayed M. A. A. Ibrahim P. Naicker M. E. S. Soliman Comparison of the Molecular Dynamics and Calculated Binding Free Energies for Nine FDA-Approved HIV-1 PR Drugs Against Subtype B and C-SA HIV PR Chem. Biol. Drug Des. 2013 81 208 218
-
(2013)
Chem. Biol. Drug Des.
, vol.81
, pp. 208-218
-
-
Ahmed, S.M.1
Kruger, H.G.2
Govender, T.3
Maguire, G.E.M.4
Sayed, Y.5
Ibrahim, M.A.A.6
Naicker, P.7
Soliman, M.E.S.8
-
14
-
-
0034859342
-
Molecular dynamics simulations of wild-type and mutant forms of the Mycobacterium tuberculosis MscL channel
-
D. E. Elmore D. A. Dougherty Molecular dynamics simulations of wild-type and mutant forms of the Mycobacterium tuberculosis MscL channel Biophys. J. 2001 81 1345 1359
-
(2001)
Biophys. J.
, vol.81
, pp. 1345-1359
-
-
Elmore, D.E.1
Dougherty, D.A.2
-
15
-
-
0037339235
-
Molecular dynamics studies of the wild-type and double mutant HIV-1 integrase complexed with the 5CITEP inhibitor: Mechanism for inhibition and drug resistance
-
M. L. Barreca K. W. Lee A. Chimirri J. M. Briggs Molecular dynamics studies of the wild-type and double mutant HIV-1 integrase complexed with the 5CITEP inhibitor: Mechanism for inhibition and drug resistance Biophys. J. 2003 84 1450 1463
-
(2003)
Biophys. J.
, vol.84
, pp. 1450-1463
-
-
Barreca, M.L.1
Lee, K.W.2
Chimirri, A.3
Briggs, J.M.4
-
16
-
-
0035195456
-
Molecular dynamics simulations of wild-type and point mutation human prion protein at normal and elevated temperature
-
E. El-Bastawissy M. H. Knaggs I. H. Gilbert Molecular dynamics simulations of wild-type and point mutation human prion protein at normal and elevated temperature J. Mol. Graphics Modell. 2001 20 145 154
-
(2001)
J. Mol. Graphics Modell.
, vol.20
, pp. 145-154
-
-
El-Bastawissy, E.1
Knaggs, M.H.2
Gilbert, I.H.3
-
17
-
-
84871818707
-
Molecular dynamics simulations of wild type and mutants of human complement receptor 2 complexed with C3d
-
H. Wan J.-p. Hu X.-h. Tian S. Chang Molecular dynamics simulations of wild type and mutants of human complement receptor 2 complexed with C3d Phys. Chem. Chem. Phys. 2013 15 1241 1251
-
(2013)
Phys. Chem. Chem. Phys.
, vol.15
, pp. 1241-1251
-
-
Wan, H.1
Hu, J.-P.2
Tian, X.-H.3
Chang, S.4
-
18
-
-
84892532472
-
Molecular dynamics study on the stability of wild-type and the R220K mutant of human prion protein
-
X. Chen S. Zhu S. Wang D. Yang J. Zhang Molecular dynamics study on the stability of wild-type and the R220K mutant of human prion protein Mol. Simul. 2014 40 504 513
-
(2014)
Mol. Simul.
, vol.40
, pp. 504-513
-
-
Chen, X.1
Zhu, S.2
Wang, S.3
Yang, D.4
Zhang, J.5
-
19
-
-
84878033069
-
Structural Comparison of the Wild-Type and Drug-Resistant Mutants of the Influenza A M2 Proton Channel by Molecular Dynamics Simulations
-
R.-X. Gu L. A. Liu Y.-H. Wang Q. Xu D.-Q. Wei Structural Comparison of the Wild-Type and Drug-Resistant Mutants of the Influenza A M2 Proton Channel by Molecular Dynamics Simulations J. Phys. Chem. B 2013 117 6042 6051
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 6042-6051
-
-
Gu, R.-X.1
Liu, L.A.2
Wang, Y.-H.3
Xu, Q.4
Wei, D.-Q.5
-
20
-
-
84934436648
-
Principal Component Analysis: A Method for Determining the Essential Dynamics of Proteins
-
in, ed. D. R. Livesay, 193-226
-
C. C. David and D. J. Jacobs, Principal Component Analysis: A Method for Determining the Essential Dynamics of Proteins, in Protein Dynamics: Methods and Protocols, ed., D. R. Livesay, 2014, pp. 193-226
-
(2014)
Protein Dynamics: Methods and Protocols
-
-
David, C.C.1
Jacobs, D.J.2
-
23
-
-
79959833426
-
Mutation D816V Alters the Internal Structure and Dynamics of c-KIT Receptor Cytoplasmic Region: Implications for Dimerization and Activation Mechanisms
-
10.1371/journal.pcbi.1002068
-
E. Laine I. C. de Beauchêne D. Perahia C. Auclair L. Tchertanov Mutation D816V Alters the Internal Structure and Dynamics of c-KIT Receptor Cytoplasmic Region: Implications for Dimerization and Activation Mechanisms PLoS Comput. Biol. 2011 7 e1002068 10.1371/journal.pcbi.1002068
-
(2011)
PLoS Comput. Biol.
, vol.7
, pp. 1002068
-
-
Laine, E.1
De Beauchêne, I.C.2
Perahia, D.3
Auclair, C.4
Tchertanov, L.5
-
24
-
-
79960149420
-
RING: Networking interacting residues, evolutionary information and energetics in protein structures
-
A. J. M. Martin M. Vidotto F. Boscariol T. Di Domenico I. Walsh S. C. E. Tosatto RING: networking interacting residues, evolutionary information and energetics in protein structures Bioinformatics 2011 27 2003 2005
-
(2011)
Bioinformatics
, vol.27
, pp. 2003-2005
-
-
Martin, A.J.M.1
Vidotto, M.2
Boscariol, F.3
Di Domenico, T.4
Walsh, I.5
Tosatto, S.C.E.6
-
25
-
-
0032573488
-
Structure of a covalently trapped catalytic complex of HIV-I reverse transcriptase: Implications for drug resistance
-
H. F. Huang R. Chopra G. L. Verdine S. C. Harrison Structure of a covalently trapped catalytic complex of HIV-I reverse transcriptase: Implications for drug resistance Science 1998 282 1669 1675
-
(1998)
Science
, vol.282
, pp. 1669-1675
-
-
Huang, H.F.1
Chopra, R.2
Verdine, G.L.3
Harrison, S.C.4
-
28
-
-
45249107059
-
Life-threatening clozapine-induced gastrointestinal hypomotility: An analysis of 102 cases
-
S. E. Palmer R. M. McLean P. M. Ellis M. Harrison-Woolrych Life-threatening clozapine-induced gastrointestinal hypomotility: An analysis of 102 cases J. Clin. Psychiatry 2008 69 759 768
-
(2008)
J. Clin. Psychiatry
, vol.69
, pp. 759-768
-
-
Palmer, S.E.1
McLean, R.M.2
Ellis, P.M.3
Harrison-Woolrych, M.4
-
29
-
-
84986516411
-
Application of the multimolecule and multiconformational RESP methodology to biopolymers-Charge derivation for DNA, RNA, and proteins
-
P. Cieplak W. D. Cornell C. Bayly P. A. Kollman Application of the multimolecule and multiconformational RESP methodology to biopolymers-Charge derivation for DNA, RNA, and proteins J. Comput. Chem. 1995 16 1357 1377
-
(1995)
J. Comput. Chem.
, vol.16
, pp. 1357-1377
-
-
Cieplak, P.1
Cornell, W.D.2
Bayly, C.3
Kollman, P.A.4
-
31
-
-
77953513118
-
Improved side-chain torsion potentials for the Amber ff99SB protein force field
-
K. Lindorff-Larsen S. Piana K. Palmo P. Maragakis J. L. Klepeis R. O. Dror D. E. Shaw Improved side-chain torsion potentials for the Amber ff99SB protein force field Proteins: Struct., Funct., Bioinf. 2010 78 1950 1958
-
(2010)
Proteins: Struct., Funct., Bioinf.
, vol.78
, pp. 1950-1958
-
-
Lindorff-Larsen, K.1
Piana, S.2
Palmo, K.3
Maragakis, P.4
Klepeis, J.L.5
Dror, R.O.6
Shaw, D.E.7
-
33
-
-
73349117827
-
An Implementation of the Smooth Particle Mesh Ewald Method on GPU Hardware
-
M. J. Harvey G. De Fabritiis An Implementation of the Smooth Particle Mesh Ewald Method on GPU Hardware J. Chem. Theory Comput. 2009 5 2371 2377
-
(2009)
J. Chem. Theory Comput.
, vol.5
, pp. 2371-2377
-
-
Harvey, M.J.1
De Fabritiis, G.2
-
34
-
-
33646940952
-
Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
J.-P. Ryckaert G. Ciccotti H. J. C. Berendsen Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes J. Comput. Phys. 1977 23 327 341
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.-P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
35
-
-
84868214675
-
SPFP: Speed without compromise-A mixed precision model for GPU accelerated molecular dynamics simulations
-
S. Le Grand A. W. Goetz R. C. Walker SPFP: Speed without compromise-A mixed precision model for GPU accelerated molecular dynamics simulations Comput. Phys. Commun. 2013 184 374 380
-
(2013)
Comput. Phys. Commun.
, vol.184
, pp. 374-380
-
-
Le Grand, S.1
Goetz, A.W.2
Walker, R.C.3
-
36
-
-
0034521981
-
Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models
-
P. A. Kollman I. Massova C. Reyes B. Kuhn S. H. Huo L. Chong M. Lee T. Lee Y. Duan W. Wang O. Donini P. Cieplak J. Srinivasan D. A. Case T. E. Cheatham Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models Acc. Chem. Res. 2000 33 889 897
-
(2000)
Acc. Chem. Res.
, vol.33
, pp. 889-897
-
-
Kollman, P.A.1
Massova, I.2
Reyes, C.3
Kuhn, B.4
Huo, S.H.5
Chong, L.6
Lee, M.7
Lee, T.8
Duan, Y.9
Wang, W.10
Donini, O.11
Cieplak, P.12
Srinivasan, J.13
Case, D.A.14
Cheatham, T.E.15
-
37
-
-
0034084991
-
Combined molecular mechanical and continuum solvent approach (MM-PBSA/GBSA) to predict ligand binding
-
I. Massova P. A. Kollman Combined molecular mechanical and continuum solvent approach (MM-PBSA/GBSA) to predict ligand binding Perspect. Drug Discovery Des. 2000 18 113 135
-
(2000)
Perspect. Drug Discovery Des.
, vol.18
, pp. 113-135
-
-
Massova, I.1
Kollman, P.A.2
-
38
-
-
14244273182
-
Theory and applications of the generalized Born solvation model in macromolecular Simulations
-
V. Tsui D. A. Case Theory and applications of the generalized Born solvation model in macromolecular Simulations Biopolymers 2001 56 275 291
-
(2001)
Biopolymers
, vol.56
, pp. 275-291
-
-
Tsui, V.1
Case, D.A.2
-
40
-
-
79957788878
-
ProDy: Protein Dynamics Inferred from Theory and Experiments
-
A. Bakan L. M. Meireles I. Bahar ProDy: Protein Dynamics Inferred from Theory and Experiments Bioinformatics 2011 27 1575 1577
-
(2011)
Bioinformatics
, vol.27
, pp. 1575-1577
-
-
Bakan, A.1
Meireles, L.M.2
Bahar, I.3
-
41
-
-
0033613812
-
Visualizing and quantifying molecular goodness-of-fit: Small-probe contact dots with explicit hydrogen atoms
-
J. M. Word S. C. Lovell T. H. LaBean H. C. Taylor M. E. Zalis B. K. Presley J. S. Richardson D. C. Richardson Visualizing and quantifying molecular goodness-of-fit: Small-probe contact dots with explicit hydrogen atoms J. Mol. Biol. 1999 285 1711 1733
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1711-1733
-
-
Word, J.M.1
Lovell, S.C.2
Labean, T.H.3
Taylor, H.C.4
Zalis, M.E.5
Presley, B.K.6
Richardson, J.S.7
Richardson, D.C.8
-
43
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
P. Shannon A. Markiel O. Ozier N. S. Baliga J. T. Wang D. Ramage N. Amin B. Schwikowski T. Ideker Cytoscape: A software environment for integrated models of biomolecular interaction networks Genome Res. 2003 13 2498 2504
-
(2003)
Genome Res.
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
44
-
-
84893517772
-
In silico profiling and structural insights of missense mutations in RET protein kinase domain by molecular dynamics and docking approach
-
C. George Priya Doss B. Rajith C. Chakraboty V. Balaji R. Magesh B. Gowthami S. Menon M. Swati M. Trivedi J. Paul R. Vasan M. Das In silico profiling and structural insights of missense mutations in RET protein kinase domain by molecular dynamics and docking approach Mol. BioSyst. 2014 10 421 436
-
(2014)
Mol. BioSyst.
, vol.10
, pp. 421-436
-
-
George Priya Doss, C.1
Rajith, B.2
Chakraboty, C.3
Balaji, V.4
Magesh, R.5
Gowthami, B.6
Menon, S.7
Swati, M.8
Trivedi, M.9
Paul, J.10
Vasan, R.11
Das, M.12
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