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Volumn 359, Issue , 2014, Pages 120-128

A set of descriptors for identifying the protein-drug interaction in cellular networking

Author keywords

Amino acid sequence; Drug target interaction; Ensemble of classifiers; Machine learning; Position specific scoring matrix

Indexed keywords

AMINO ACID; ARTIFICIAL INTELLIGENCE; DRUG; MATRIX; PROTEIN;

EID: 84903520297     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2014.06.008     Document Type: Article
Times cited : (25)

References (79)
  • 1
    • 84875576158 scopus 로고    scopus 로고
    • Propy: a tool to generate various modes of Chou's PseAAC
    • Cao D.S., et al. Propy: a tool to generate various modes of Chou's PseAAC. Bioinformatics 2013, 29:960-962.
    • (2013) Bioinformatics , vol.29 , pp. 960-962
    • Cao, D.S.1
  • 2
    • 84876053736 scopus 로고    scopus 로고
    • IRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition
    • (open access at)
    • Chen W., et al. iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition. Nucleic Acids Res. 2013, 41:e69. (open access at). 10.1093/nar/gks1450.
    • (2013) Nucleic Acids Res. , vol.41
    • Chen, W.1
  • 3
    • 0024005728 scopus 로고
    • Review: low-frequency collective motion in biomacromolecules and its biological functions
    • Chou K.C. Review: low-frequency collective motion in biomacromolecules and its biological functions. Biophys. Chem. 1988, 30:3-48.
    • (1988) Biophys. Chem. , vol.30 , pp. 3-48
    • Chou, K.C.1
  • 4
    • 0024678051 scopus 로고
    • Low-frequency resonance and cooperativity of hemoglobin
    • Chou K.C. Low-frequency resonance and cooperativity of hemoglobin. Trends Biochem. Sci. 1989, 14:212-213.
    • (1989) Trends Biochem. Sci. , vol.14 , pp. 212-213
    • Chou, K.C.1
  • 6
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudo-amino acid composition
    • Chou K.C. Prediction of protein cellular attributes using pseudo-amino acid composition. PROTEINS: Struct. Fucnt. Genet. 2001, 43:246-255.
    • (2001) PROTEINS: Struct. Fucnt. Genet. , vol.43 , pp. 246-255
    • Chou, K.C.1
  • 7
    • 3242792729 scopus 로고    scopus 로고
    • Review: structural bioinformatics and its impact to biomedical science
    • Chou K.C. Review: structural bioinformatics and its impact to biomedical science. Curr. Med. Chem. 2004, 11:2105-2134.
    • (2004) Curr. Med. Chem. , vol.11 , pp. 2105-2134
    • Chou, K.C.1
  • 8
    • 12744279642 scopus 로고    scopus 로고
    • Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
    • Chou K.C. Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes. Bioinformatics 2005, 21:10-19.
    • (2005) Bioinformatics , vol.21 , pp. 10-19
    • Chou, K.C.1
  • 9
    • 23944438427 scopus 로고    scopus 로고
    • Prediction of G-protein-coupled receptor classes
    • Chou K.C. Prediction of G-protein-coupled receptor classes. J. Proteome Res. 2005, 4:1413-1418.
    • (2005) J. Proteome Res. , vol.4 , pp. 1413-1418
    • Chou, K.C.1
  • 10
    • 79951518208 scopus 로고    scopus 로고
    • Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review)
    • Chou KC Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review). J. Theor. Biol. 2011, 273:236-247.
    • (2011) J. Theor. Biol. , vol.273 , pp. 236-247
    • Chou, K.C.1
  • 11
    • 84877758233 scopus 로고    scopus 로고
    • Some remarks on predicting multi-label attributes in molecular biosystems
    • Chou KC Some remarks on predicting multi-label attributes in molecular biosystems. Mol. Biosyst. 2013, 9:1092-1100.
    • (2013) Mol. Biosyst. , vol.9 , pp. 1092-1100
    • Chou, K.C.1
  • 12
    • 34548606295 scopus 로고    scopus 로고
    • Review: recent progresses in protein subcellular location prediction
    • Chou K.C., Shen H.B. Review: recent progresses in protein subcellular location prediction. Anal. Biochem. 2007, 370(1-16).
    • (2007) Anal. Biochem. , vol.370 , Issue.1-16
    • Chou, K.C.1    Shen, H.B.2
  • 13
    • 77649339280 scopus 로고    scopus 로고
    • Review: recent advances in developing web-servers for predicting protein attributes
    • (openly accessible at)
    • Chou K.C., Shen H.B. Review: recent advances in developing web-servers for predicting protein attributes. Nat. Sci. 2009, 2:63-92. (openly accessible at). http://www.scirp.org/journal/NS/.
    • (2009) Nat. Sci. , vol.2 , pp. 63-92
    • Chou, K.C.1    Shen, H.B.2
  • 14
    • 0005964251 scopus 로고
    • The biological functions of low-frequency phonons
    • Chou K.C., et al. The biological functions of low-frequency phonons. Sci. Sin. 1977, 20:447-457.
    • (1977) Sci. Sin. , vol.20 , pp. 447-457
    • Chou, K.C.1
  • 15
    • 0041848237 scopus 로고    scopus 로고
    • Binding mechanism of coronavirus main proteinase with ligands and its implication to drug design against SARS
    • Chou K.C., Wei D.Q., Zhong W.Z. Binding mechanism of coronavirus main proteinase with ligands and its implication to drug design against SARS. Biochem. Biophys. Res. Commun. 2003, 308(2):148-151.
    • (2003) Biochem. Biophys. Res. Commun. , vol.308 , Issue.2 , pp. 148-151
    • Chou, K.C.1    Wei, D.Q.2    Zhong, W.Z.3
  • 17
    • 29644438050 scopus 로고    scopus 로고
    • Statistical comparisons of classifiers over multiple data sets
    • Demšar J Statistical comparisons of classifiers over multiple data sets. J. Mach. Learn. Res. 2006, 7:1-30.
    • (2006) J. Mach. Learn. Res. , vol.7 , pp. 1-30
    • Demšar, J.1
  • 18
    • 0001829246 scopus 로고
    • Introduction to gray system theory
    • Ding J.L. Introduction to gray system theory. J. Gray Syst. 1989, 1-24.
    • (1989) J. Gray Syst. , pp. 1-24
    • Ding, J.L.1
  • 19
    • 84859932176 scopus 로고    scopus 로고
    • PseAAC-builder: a cross-platform stand-alone program for generating various special Chou's pseudo-amino acid compositions
    • Du P., et al. PseAAC-builder: a cross-platform stand-alone program for generating various special Chou's pseudo-amino acid compositions. Anal. Biochem. 2012, 425:117-119.
    • (2012) Anal. Biochem. , vol.425 , pp. 117-119
    • Du, P.1
  • 20
    • 84895429516 scopus 로고    scopus 로고
    • PseAAC-general: fast building various modes of general form of Chou's pseudo-amino acid composition for large-scale protein datasets
    • Du P., et al. PseAAC-general: fast building various modes of general form of Chou's pseudo-amino acid composition for large-scale protein datasets. Int. J. Mol. Sci. 2014, 15:3495-3506.
    • (2014) Int. J. Mol. Sci. , vol.15 , pp. 3495-3506
    • Du, P.1
  • 21
    • 33847207834 scopus 로고    scopus 로고
    • Molecular similarity analysis in virtual screening: foundations, limitations and novel approaches
    • Eckert H., Bajorath J. Molecular similarity analysis in virtual screening: foundations, limitations and novel approaches. Drug Discovery Today 2007, 12:225-233.
    • (2007) Drug Discovery Today , vol.12 , pp. 225-233
    • Eckert, H.1    Bajorath, J.2
  • 22
    • 77649337793 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
    • Esmaeili M., et al. Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses. J. Theor. Biol. 2010, 263:203-209.
    • (2010) J. Theor. Biol. , vol.263 , pp. 203-209
    • Esmaeili, M.1
  • 23
    • 84896470341 scopus 로고    scopus 로고
    • INR-drug: predicting the interaction of drugs with nuclear receptors in cellular networking
    • Fan Y.N., et al. iNR-drug: predicting the interaction of drugs with nuclear receptors in cellular networking. Int. J. Mol. Sci. 2014, 15:4915-4937.
    • (2014) Int. J. Mol. Sci. , vol.15 , pp. 4915-4937
    • Fan, Y.N.1
  • 24
    • 84885640993 scopus 로고    scopus 로고
    • IHSP-PseRAAAC: identifying the heat shock protein families using pseudo reduced amino acid alphabet composition
    • Feng PM, Chen W, Lin H, Chou KC iHSP-PseRAAAC: identifying the heat shock protein families using pseudo reduced amino acid alphabet composition. Anal. Biochem. 2013, 442:118-125.
    • (2013) Anal. Biochem. , vol.442 , pp. 118-125
    • Feng, P.M.1    Chen, W.2    Lin, H.3    Chou, K.C.4
  • 25
    • 59649123088 scopus 로고    scopus 로고
    • Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
    • Georgiou D.N., et al. Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition. J. Theor. Biol. 2009, 257:17-26.
    • (2009) J. Theor. Biol. , vol.257 , pp. 17-26
    • Georgiou, D.N.1
  • 26
    • 33747738463 scopus 로고
    • Singular value decomposition and least squares solutions
    • Golub G.H., Reinsch C. Singular value decomposition and least squares solutions. Numer. Math. 1970, 14(5):403-420.
    • (1970) Numer. Math. , vol.14 , Issue.5 , pp. 403-420
    • Golub, G.H.1    Reinsch, C.2
  • 28
    • 0023375315 scopus 로고
    • Gribskov M. et al., (Eds.), Proceedings of the National Academy of Sciences (PNAS). Proc. Nat'l. Academy of Sciences USA
    • Gribskov, M., A.D. McLachlan, D. Eisenberg,1987. Profile analysis: detection of distantly related proteins. In: Gribskov M. et al., (Eds.), Proceedings of the National Academy of Sciences (PNAS). Proc. Nat'l. Academy of Sciences USA, vol. 84, pp. 4355-4358.
    • (1987) Profile analysis: detection of distantly related proteins , vol.84 , pp. 4355-4358
    • Gribskov, M.1    McLachlan, A.D.2    Eisenberg, D.3
  • 29
    • 77951992931 scopus 로고    scopus 로고
    • Prediction of G-protein-coupled receptor classes in low homology using Chou's pseudo amino acid composition with approximate entropy and hydrophobicity
    • Gu Q., et al. Prediction of G-protein-coupled receptor classes in low homology using Chou's pseudo amino acid composition with approximate entropy and hydrophobicity. Patterns Protein Pept. Lett. 2010, 17:559-567.
    • (2010) Patterns Protein Pept. Lett. , vol.17 , pp. 559-567
    • Gu, Q.1
  • 30
    • 84896463976 scopus 로고    scopus 로고
    • INuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition
    • Guo S.H., et al. iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition. Bioinformatics 2014, 10.1093/bioinformatics/btu083.
    • (2014) Bioinformatics
    • Guo, S.H.1
  • 31
    • 78649756877 scopus 로고    scopus 로고
    • Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
    • Hayat M., Khan A. Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition. J. Theor. Biol. 2011, 271:10-17.
    • (2011) J. Theor. Biol. , vol.271 , pp. 10-17
    • Hayat, M.1    Khan, A.2
  • 32
    • 77950448057 scopus 로고    scopus 로고
    • Predicting drug-target interaction networks based on functional groups and biological features
    • He Z.S., et al. Predicting drug-target interaction networks based on functional groups and biological features. PLoS One 2010, 5:e9603.
    • (2010) PLoS One , vol.5
    • He, Z.S.1
  • 33
    • 3242813635 scopus 로고    scopus 로고
    • Utility of homology models in the drug discovery process
    • Hillisch A., Pineda L.F., Hilgenfeld R. Utility of homology models in the drug discovery process. Drug Discovery Today 2004, 9:659-669.
    • (2004) Drug Discovery Today , vol.9 , pp. 659-669
    • Hillisch, A.1    Pineda, L.F.2    Hilgenfeld, R.3
  • 34
    • 1642357706 scopus 로고    scopus 로고
    • The many roles of computation in drug discovery
    • Jorgensen W.L. The many roles of computation in drug discovery. Science 2004, 303.
    • (2004) Science , vol.303
    • Jorgensen, W.L.1
  • 35
    • 42949108787 scopus 로고    scopus 로고
    • Ion channels as drug targets: the next GPCRs
    • Kaczorowski G., et al. Ion channels as drug targets: the next GPCRs. J. Cell Biol. 2008, 131:399-405.
    • (2008) J. Cell Biol. , vol.131 , pp. 399-405
    • Kaczorowski, G.1
  • 36
    • 33644874819 scopus 로고    scopus 로고
    • From genomics to chemical genomics: new developments in KEGG
    • Kanehisa M., et al. From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res. 2006, 34:D354-D357.
    • (2006) Nucleic Acids Res. , vol.34
    • Kanehisa, M.1
  • 38
    • 0037264608 scopus 로고    scopus 로고
    • A guide to drug discovery: target selection in drug discovery
    • Knowles J., Gromo G. A guide to drug discovery: target selection in drug discovery. Nat. Rev. Drug Discovery 2003, 2:63-69.
    • (2003) Nat. Rev. Drug Discovery , vol.2 , pp. 63-69
    • Knowles, J.1    Gromo, G.2
  • 39
    • 34247590053 scopus 로고    scopus 로고
    • Comparative study of the physicochemical properties of six clinical low molecular weight gadolinium contrast agents
    • Laurent S., Elst L.V., Muller R.N. Comparative study of the physicochemical properties of six clinical low molecular weight gadolinium contrast agents. Contrast Media Mol. Imaging 2006, 1:128-137.
    • (2006) Contrast Media Mol. Imaging , vol.1 , pp. 128-137
    • Laurent, S.1    Elst, L.V.2    Muller, R.N.3
  • 40
    • 47249153247 scopus 로고    scopus 로고
    • Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach
    • Li F.M., Li Q.Z. Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach. Protein Pept. Lett. 2008, 15.
    • (2008) Protein Pept. Lett. , vol.15
    • Li, F.M.1    Li, Q.Z.2
  • 41
    • 84883658706 scopus 로고    scopus 로고
    • Theoretical and experimental biology in one
    • Lin S.X., et al. Theoretical and experimental biology in one. J. Biomed. Sci. Eng. (JBiSE) 2013, 6:435-442.
    • (2013) J. Biomed. Sci. Eng. (JBiSE) , vol.6 , pp. 435-442
    • Lin, S.X.1
  • 42
    • 58149345703 scopus 로고    scopus 로고
    • A discriminative method for protein remote homology detection and fold recognition combining top-n-grams and latent semantic analysis
    • Liu B, Wang X, Lin L, Dong Q, Wang X A discriminative method for protein remote homology detection and fold recognition combining top-n-grams and latent semantic analysis. BMC Bioinf. 2008, 9:510.
    • (2008) BMC Bioinf. , vol.9 , pp. 510
    • Liu, B.1    Wang, X.2    Lin, L.3    Dong, Q.4    Wang, X.5
  • 43
    • 68749110968 scopus 로고    scopus 로고
    • Exploiting three kinds of interface propensities to identify protein binding sites
    • Liu B, Wang X, Lin L, Dong Q, Wang X Exploiting three kinds of interface propensities to identify protein binding sites. Comput. Biol. Chem. 2009, 33:303-311.
    • (2009) Comput. Biol. Chem. , vol.33 , pp. 303-311
    • Liu, B.1    Wang, X.2    Lin, L.3    Dong, Q.4    Wang, X.5
  • 44
    • 84867004398 scopus 로고    scopus 로고
    • Using amino acid physicochemical distance transformation for fast protein remote homology detection
    • Liu B, Wang X, Chen Q, Dong Q, Lan X Using amino acid physicochemical distance transformation for fast protein remote homology detection. PLoS One 2012, 7:e46633.
    • (2012) PLoS One , vol.7
    • Liu, B.1    Wang, X.2    Chen, Q.3    Dong, Q.4    Lan, X.5
  • 45
    • 84892972298 scopus 로고    scopus 로고
    • Protein remote homology detection by combining Chou's pseudo amino acid composition and profile-based protein representation
    • Liu B, Wang X, Zou Q, Dong Q, Chen Q Protein remote homology detection by combining Chou's pseudo amino acid composition and profile-based protein representation. Mol. Inf. 2013, 32:775-782.
    • (2013) Mol. Inf. , vol.32 , pp. 775-782
    • Liu, B.1    Wang, X.2    Zou, Q.3    Dong, Q.4    Chen, Q.5
  • 46
    • 84892954329 scopus 로고    scopus 로고
    • Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection
    • Liu B., et al. Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection. Bioinformatics 2014, 30:472-479.
    • (2014) Bioinformatics , vol.30 , pp. 472-479
    • Liu, B.1
  • 47
    • 84901288109 scopus 로고    scopus 로고
    • Using distances between top-n-gram and residue pairs for protein remote homology detection
    • Liu B, Xu J, Zou Q, Xu R, Wang X, et al. Using distances between top-n-gram and residue pairs for protein remote homology detection. BMC Bioinf. 2014, 15:S3.
    • (2014) BMC Bioinf. , vol.15
    • Liu, B.1    Xu, J.2    Zou, Q.3    Xu, R.4    Wang, X.5
  • 48
    • 84893021381 scopus 로고    scopus 로고
    • IEzy-drug: a web server for identifying the interaction between enzymes and drugs in cellular networking
    • Min JL, Xiao X, Chou KC iEzy-drug: a web server for identifying the interaction between enzymes and drugs in cellular networking. Biomed. Res. Int. 2013, 2013:701317. 10.1155/2013/701317.
    • (2013) Biomed. Res. Int. , vol.2013 , pp. 701317
    • Min, J.L.1    Xiao, X.2    Chou, K.C.3
  • 49
    • 77958497871 scopus 로고    scopus 로고
    • Prediction of cyclin proteins using Chou's pseudo amino acid composition
    • Mohabatkar H. Prediction of cyclin proteins using Chou's pseudo amino acid composition. Protein Pept. Lett. 2010, 17:1207-1214.
    • (2010) Protein Pept. Lett. , vol.17 , pp. 1207-1214
    • Mohabatkar, H.1
  • 50
    • 79955564229 scopus 로고    scopus 로고
    • Prediction of GABA(A) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
    • Mohabatkar H., et al. Prediction of GABA(A) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine. J. Theor. Biol. 2011, 281:18-23.
    • (2011) J. Theor. Biol. , vol.281 , pp. 18-23
    • Mohabatkar, H.1
  • 51
    • 0001338954 scopus 로고    scopus 로고
    • Simplified amino acid alphabets for protein fold recognition and implications for folding
    • Murphy L.R., Wallqvist A., Levy R.M. Simplified amino acid alphabets for protein fold recognition and implications for folding. Protein Eng. 2000, 13(3):149-152.
    • (2000) Protein Eng. , vol.13 , Issue.3 , pp. 149-152
    • Murphy, L.R.1    Wallqvist, A.2    Levy, R.M.3
  • 52
    • 43149097851 scopus 로고    scopus 로고
    • Genetic programming for creating Chou's pseudo amino acid based features for submitochondria localization
    • Nanni L., et al. Genetic programming for creating Chou's pseudo amino acid based features for submitochondria localization. Amino Acids 2008, 34:653-660.
    • (2008) Amino Acids , vol.34 , pp. 653-660
    • Nanni, L.1
  • 53
    • 77953934865 scopus 로고    scopus 로고
    • A high performance set of PseAAC descriptors extracted from the amino acid sequence for protein classification
    • Nanni L., Brahnam S., Lumini A. A high performance set of PseAAC descriptors extracted from the amino acid sequence for protein classification. J. Theor. Biol. 2010, 266(1):1-10.
    • (2010) J. Theor. Biol. , vol.266 , Issue.1 , pp. 1-10
    • Nanni, L.1    Brahnam, S.2    Lumini, A.3
  • 54
    • 84864770395 scopus 로고    scopus 로고
    • Wavelet images and Chou's pseudo amino acid composition for protein classification
    • Nanni L., Brahnam S., Lumini A. Wavelet images and Chou's pseudo amino acid composition for protein classification. Amino Acids 2012, 43(2):657-665.
    • (2012) Amino Acids , vol.43 , Issue.2 , pp. 657-665
    • Nanni, L.1    Brahnam, S.2    Lumini, A.3
  • 55
    • 84856475734 scopus 로고    scopus 로고
    • Identifying bacterial virulent proteins by fusing a set of classifiers based on variants of Chou's pseudo amino acid composition and on evolutionary information
    • Nanni L., et al. Identifying bacterial virulent proteins by fusing a set of classifiers based on variants of Chou's pseudo amino acid composition and on evolutionary information. IEEE/ACM Trans. Comput. Biol. Bioinf. 2012, 9:467-475.
    • (2012) IEEE/ACM Trans. Comput. Biol. Bioinf. , vol.9 , pp. 467-475
    • Nanni, L.1
  • 56
    • 80053512597 scopus 로고    scopus 로고
    • Open babel: an open chemical toolbox
    • O'Boyle N.M., et al. Open babel: an open chemical toolbox. J. Cheminf. 2011, 3:33.
    • (2011) J. Cheminf. , vol.3 , pp. 33
    • O'Boyle, N.M.1
  • 57
    • 84892958175 scopus 로고    scopus 로고
    • IRSpot-TNCPseAAC: identify recombination spots with trinucleotide composition and pseudo amino acid components
    • Qiu W.R., et al. iRSpot-TNCPseAAC: identify recombination spots with trinucleotide composition and pseudo amino acid components. Int. J. Mol. Sci. 2014, 15:1746-1766.
    • (2014) Int. J. Mol. Sci. , vol.15 , pp. 1746-1766
    • Qiu, W.R.1
  • 58
    • 0030599010 scopus 로고    scopus 로고
    • A fast flexible docking method using an incremental construction algorithm
    • Rarey M., et al. A fast flexible docking method using an incremental construction algorithm. J. Mol. Biol. 1996, 261:470-489.
    • (1996) J. Mol. Biol. , vol.261 , pp. 470-489
    • Rarey, M.1
  • 59
    • 0036015852 scopus 로고    scopus 로고
    • Application of novel atom-type AI topological indices to QSPR studies of alkanes
    • Ren B. Application of novel atom-type AI topological indices to QSPR studies of alkanes. Comput. Chem. 2002, 26(4):357-369.
    • (2002) Comput. Chem. , vol.26 , Issue.4 , pp. 357-369
    • Ren, B.1
  • 61
    • 37549004451 scopus 로고    scopus 로고
    • PseAAC: a flexible web-server for generating various kinds of protein pseudo amino acid composition
    • Shen H.B., et al. PseAAC: a flexible web-server for generating various kinds of protein pseudo amino acid composition. Anal. Biochem. 2008, 373:386-388.
    • (2008) Anal. Biochem. , vol.373 , pp. 386-388
    • Shen, H.B.1
  • 62
    • 84883143619 scopus 로고    scopus 로고
    • IGPCR-drug: a web server for predicting interaction between GPCRs and drugs in cellular networking
    • Xiao X., et al. iGPCR-drug: a web server for predicting interaction between GPCRs and drugs in cellular networking. PLoS One 2013, 8(8):e72234.
    • (2013) PLoS One , vol.8 , Issue.8
    • Xiao, X.1
  • 63
    • 84887868490 scopus 로고    scopus 로고
    • Predict drug-protein interaction in cellular networking
    • Xiao X, Min JL, Wang P, Chou KC Predict drug-protein interaction in cellular networking. Curr. Top. Med. Chem. 2013, 13:1707-1712.
    • (2013) Curr. Top. Med. Chem. , vol.13 , pp. 1707-1712
    • Xiao, X.1    Min, J.L.2    Wang, P.3    Chou, K.C.4
  • 64
    • 84883661549 scopus 로고    scopus 로고
    • ICDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints
    • Xiao X., et al. iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints. J. Theor. Biol. 2013, 337:71-79.
    • (2013) J. Theor. Biol. , vol.337 , pp. 71-79
    • Xiao, X.1
  • 65
    • 84880015175 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition to predict protein solubility: an approach with entropies in information theory
    • Xiaohui N., et al. Using the concept of Chou's pseudo amino acid composition to predict protein solubility: an approach with entropies in information theory. J. Theor. Biol. 2013, 332:211-217.
    • (2013) J. Theor. Biol. , vol.332 , pp. 211-217
    • Xiaohui, N.1
  • 66
    • 84873575437 scopus 로고    scopus 로고
    • ISNO-PseAAC: predict cysteine S-nitrosylation sites in proteins by incorporating position specific amino acid propensity into pseudo amino acid composition
    • Xu Y., et al. iSNO-PseAAC: predict cysteine S-nitrosylation sites in proteins by incorporating position specific amino acid propensity into pseudo amino acid composition. PLoS One 2013, 8:e55844.
    • (2013) PLoS One , vol.8
    • Xu, Y.1
  • 67
    • 84885156363 scopus 로고    scopus 로고
    • ISNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteine S-nitrosylation sites in proteins
    • (open access at)
    • Xu Y., et al. iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteine S-nitrosylation sites in proteins. PeerJ 2013, 1:e171. (open access at). https://peerj.com/articles/171.pdf.
    • (2013) PeerJ , vol.1
    • Xu, Y.1
  • 68
    • 46249090791 scopus 로고    scopus 로고
    • Prediction of drug-target interaction networks from the integration of chemical and genomic spaces
    • Yamanishi Y., et al. Prediction of drug-target interaction networks from the integration of chemical and genomic spaces. Bioinformatics 2008, 24:i232-i240.
    • (2008) Bioinformatics , vol.24
    • Yamanishi, Y.1
  • 69
    • 77955877726 scopus 로고    scopus 로고
    • Using auto covariance method for functional discrimination of membrane proteins based on evolution information
    • Yang L., et al. Using auto covariance method for functional discrimination of membrane proteins based on evolution information. Amino Acids 2010, 38:1497-1503.
    • (2010) Amino Acids , vol.38 , pp. 1497-1503
    • Yang, L.1
  • 70
    • 84862759124 scopus 로고    scopus 로고
    • Predicting subcellular location of apoptosis proteins with pseudo amino acid composition: approach from amino acid substitution matrix and auto covariance transformation
    • (p)
    • Yu X., et al. Predicting subcellular location of apoptosis proteins with pseudo amino acid composition: approach from amino acid substitution matrix and auto covariance transformation. Amino Acids 2011, (p). 10.1007/s00726-011-0848-8.
    • (2011) Amino Acids
    • Yu, X.1
  • 71
    • 67349244013 scopus 로고    scopus 로고
    • Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
    • Zeng Y.H., et al. Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach. J. Theor. Biol. 2009, 259:366-372.
    • (2009) J. Theor. Biol. , vol.259 , pp. 366-372
    • Zeng, Y.H.1
  • 72
    • 67349244013 scopus 로고    scopus 로고
    • Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
    • Zeng Y.H., et al. Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach. J. Theor. Biol. 2009, 259(2):366-372.
    • (2009) J. Theor. Biol. , vol.259 , Issue.2 , pp. 366-372
    • Zeng, Y.H.1
  • 73
    • 50949129207 scopus 로고    scopus 로고
    • Using Chou's pseudo amino acid composition to predict protein quaternary structure: a sequence-segmented PseAAC approach
    • Zhang S.W., et al. Using Chou's pseudo amino acid composition to predict protein quaternary structure: a sequence-segmented PseAAC approach. Amino Acids 2008, 35:591-598.
    • (2008) Amino Acids , vol.35 , pp. 591-598
    • Zhang, S.W.1
  • 74
    • 43149104120 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition to predict protein subcellular localization: an approach by incorporating evolutionary information and von Neumann entropies
    • Zhang S.W., et al. Using the concept of Chou's pseudo amino acid composition to predict protein subcellular localization: an approach by incorporating evolutionary information and von Neumann entropies. Amino Acids 2008, 34:565-572.
    • (2008) Amino Acids , vol.34 , pp. 565-572
    • Zhang, S.W.1
  • 75
    • 78751536327 scopus 로고    scopus 로고
    • An improved profile-level domain linker propensity index for protein domain boundary prediction
    • Zhang Y, Liu B, Dong Q, Jin VX An improved profile-level domain linker propensity index for protein domain boundary prediction. Protein Pept. Lett. 2011, 18:7-16.
    • (2011) Protein Pept. Lett. , vol.18 , pp. 7-16
    • Zhang, Y.1    Liu, B.2    Dong, Q.3    Jin, V.X.4
  • 76
    • 34548439881 scopus 로고    scopus 로고
    • Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
    • Zhou X.B., et al. Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes. J. Theor. Biol. 2007, 248:546-551.
    • (2007) J. Theor. Biol. , vol.248 , pp. 546-551
    • Zhou, X.B.1
  • 77
    • 27544507236 scopus 로고    scopus 로고
    • A probabilistic model for mining implicit 'chemical compound-gene' relations from literature
    • Zhu S., et al. A probabilistic model for mining implicit 'chemical compound-gene' relations from literature. Bioinformatics 2005, 21(Suppl 2):ii245-ii251.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 2
    • Zhu, S.1
  • 78
    • 78650099168 scopus 로고    scopus 로고
    • Supersecondary structure prediction using Chou's pseudo amino acid composition
    • Zou D., et al. Supersecondary structure prediction using Chou's pseudo amino acid composition. J. Comput. Chem. 2011, 32:271-278.
    • (2011) J. Comput. Chem. , vol.32 , pp. 271-278
    • Zou, D.1
  • 79
    • 78650099168 scopus 로고    scopus 로고
    • Supersecondary structure prediction using Chou's pseudo amino acid composition
    • Zou D., et al. Supersecondary structure prediction using Chou's pseudo amino acid composition. J. Comput. Chem. 2011, 32:271-278.
    • (2011) J. Comput. Chem. , vol.32 , pp. 271-278
    • Zou, D.1


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