메뉴 건너뛰기




Volumn 8, Issue 2, 2013, Pages

iSNO-PseAAC: Predict Cysteine S-Nitrosylation Sites in Proteins by Incorporating Position Specific Amino Acid Propensity into Pseudo Amino Acid Composition

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ALGORITHM; AMINO ACID ANALYSIS; AMINO ACID COMPOSITION; ARTICLE; COMPUTER PREDICTION; CONTROLLED STUDY; DATA ANALYSIS; GENOMICS; HIGH THROUGHPUT SEQUENCING; MATHEMATICAL COMPUTING; MATHEMATICAL MODEL; NITROSYLATION; PREDICTIVE VALUE; PROTEIN PROCESSING; QUALITY CONTROL; SEQUENCE ANALYSIS; VALIDATION PROCESS;

EID: 84873575437     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0055844     Document Type: Article
Times cited : (385)

References (66)
  • 1
    • 0037338365 scopus 로고    scopus 로고
    • Proteomic analysis of post-translational modifications
    • Mann M, Jensen ON, (2003) Proteomic analysis of post-translational modifications. Nat Biotechnol 21: 255-261.
    • (2003) Nat Biotechnol , vol.21 , pp. 255-261
    • Mann, M.1    Jensen, O.N.2
  • 2
    • 34548571932 scopus 로고    scopus 로고
    • Unbiased identification of cysteine S-nitrosylation sites on proteins
    • Derakhshan B, Wille PC, Gross SS, (2007) Unbiased identification of cysteine S-nitrosylation sites on proteins. Nat Protoc 2: 1685-1691.
    • (2007) Nat Protoc , vol.2 , pp. 1685-1691
    • Derakhshan, B.1    Wille, P.C.2    Gross, S.S.3
  • 4
    • 52149108919 scopus 로고    scopus 로고
    • S-Nitrosylation of histone deacetylase 2 induces chromatin remodelling in neurons
    • Nott A, Watson PM, Robinson JD, Crepaldi L, Riccio A, (2008) S-Nitrosylation of histone deacetylase 2 induces chromatin remodelling in neurons. Nature 455: 411-415.
    • (2008) Nature , vol.455 , pp. 411-415
    • Nott, A.1    Watson, P.M.2    Robinson, J.D.3    Crepaldi, L.4    Riccio, A.5
  • 5
    • 70049083635 scopus 로고    scopus 로고
    • Protein S-nitrosylation in health and disease: a current perspective
    • Foster MW, Hess DT, Stamler JS, (2009) Protein S-nitrosylation in health and disease: a current perspective. Trends Mol Med 15: 391-404.
    • (2009) Trends Mol Med , vol.15 , pp. 391-404
    • Foster, M.W.1    Hess, D.T.2    Stamler, J.S.3
  • 7
    • 3242733689 scopus 로고    scopus 로고
    • Nitrosative stress linked to sporadic Parkinson's disease: S-nitrosylation of parkin regulates its E3 ubiquitin ligase activity
    • Yao D, Gu Z, Nakamura T, Shi ZQ, Ma Y, et al. (2004) Nitrosative stress linked to sporadic Parkinson's disease: S-nitrosylation of parkin regulates its E3 ubiquitin ligase activity. Proc Natl Acad Sci U S A 101: 10810-10814.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 10810-10814
    • Yao, D.1    Gu, Z.2    Nakamura, T.3    Shi, Z.Q.4    Ma, Y.5
  • 8
    • 33745315287 scopus 로고    scopus 로고
    • S-nitrosylated protein-disulphide isomerase links protein misfolding to neurodegeneration
    • Uehara T, Nakamura T, Yao D, Shi ZQ, Gu Z, et al. (2006) S-nitrosylated protein-disulphide isomerase links protein misfolding to neurodegeneration. Nature 441: 513-517.
    • (2006) Nature , vol.441 , pp. 513-517
    • Uehara, T.1    Nakamura, T.2    Yao, D.3    Shi, Z.Q.4    Gu, Z.5
  • 9
    • 64249133725 scopus 로고    scopus 로고
    • S-nitrosylation of Drp1 mediates beta-amyloid-related mitochondrial fission and neuronal injury
    • Cho DH, Nakamura T, Fang J, Cieplak P, Godzik A, et al. (2009) S-nitrosylation of Drp1 mediates beta-amyloid-related mitochondrial fission and neuronal injury. Science 324: 102-105.
    • (2009) Science , vol.324 , pp. 102-105
    • Cho, D.H.1    Nakamura, T.2    Fang, J.3    Cieplak, P.4    Godzik, A.5
  • 12
    • 33646580362 scopus 로고    scopus 로고
    • Identification of S-nitrosylation motifs by site-specific mapping of the S-nitrosocysteine proteome in human vascular smooth muscle cells
    • Greco TM, Hodara R, Parastatidis I, Heijnen HF, Dennehy MK, et al. (2006) Identification of S-nitrosylation motifs by site-specific mapping of the S-nitrosocysteine proteome in human vascular smooth muscle cells. Proc Natl Acad Sci U S A 103: 7420-7425.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 7420-7425
    • Greco, T.M.1    Hodara, R.2    Parastatidis, I.3    Heijnen, H.F.4    Dennehy, M.K.5
  • 13
  • 14
    • 79851512689 scopus 로고    scopus 로고
    • The SNO-proteome: causation and classifications
    • Seth D, Stamler JS, (2011) The SNO-proteome: causation and classifications. Curr Opin Chem Biol 15: 129-136.
    • (2011) Curr Opin Chem Biol , vol.15 , pp. 129-136
    • Seth, D.1    Stamler, J.S.2
  • 15
    • 32244445145 scopus 로고    scopus 로고
    • SNOSID, a proteomic method for identification of cysteine S-nitrosylation sites in complex protein mixtures
    • Hao G, Derakhshan B, Shi L, Campagne F, Gross SS, (2006) SNOSID, a proteomic method for identification of cysteine S-nitrosylation sites in complex protein mixtures. Proc Natl Acad Sci U S A 103: 1012-1017.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 1012-1017
    • Hao, G.1    Derakhshan, B.2    Shi, L.3    Campagne, F.4    Gross, S.S.5
  • 16
    • 77955283497 scopus 로고    scopus 로고
    • GPS-SNO: computational prediction of protein S-nitrosylation sites with a modified GPS algorithm
    • Xue Y, Liu Z, Gao X, Jin C, Wen L, et al. (2010) GPS-SNO: computational prediction of protein S-nitrosylation sites with a modified GPS algorithm. PLoS One 5: e11290.
    • (2010) PLoS One , vol.5
    • Xue, Y.1    Liu, Z.2    Gao, X.3    Jin, C.4    Wen, L.5
  • 17
    • 79953309904 scopus 로고    scopus 로고
    • An efficient support vector machine approach for identifying protein S-nitrosylation sites
    • Li YX, Shao YH, Jing L, Deng NY, (2011) An efficient support vector machine approach for identifying protein S-nitrosylation sites. Protein Pept Lett 18: 573-587.
    • (2011) Protein Pept Lett , vol.18 , pp. 573-587
    • Li, Y.X.1    Shao, Y.H.2    Jing, L.3    Deng, N.Y.4
  • 18
    • 84856347308 scopus 로고    scopus 로고
    • Predict and analyze S-nitrosylation modification sites with the mRMR and IFS approaches
    • Li BQ, Hu LL, Niu S, Cai YD, Chou KC, (2012) Predict and analyze S-nitrosylation modification sites with the mRMR and IFS approaches. Journal of Proteomics 75: 1654-1665.
    • (2012) Journal of Proteomics , vol.75 , pp. 1654-1665
    • Li, B.Q.1    Hu, L.L.2    Niu, S.3    Cai, Y.D.4    Chou, K.C.5
  • 19
    • 79951518208 scopus 로고    scopus 로고
    • Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review)
    • Chou KC, (2011) Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review). Journal of Theoretical Biology 273: 236-247.
    • (2011) Journal of Theoretical Biology , vol.273 , pp. 236-247
    • Chou, K.C.1
  • 20
    • 84857411675 scopus 로고    scopus 로고
    • iNR-PhysChem: A Sequence-Based Predictor for Identifying Nuclear Receptors and Their Subfamilies via Physical-Chemical Property Matrix
    • Xiao X, Wang P, Chou KC, (2012) iNR-PhysChem: A Sequence-Based Predictor for Identifying Nuclear Receptors and Their Subfamilies via Physical-Chemical Property Matrix. PLoS ONE 7: e30869.
    • (2012) PLoS ONE , vol.7
    • Xiao, X.1    Wang, P.2    Chou, K.C.3
  • 21
    • 80052855771 scopus 로고    scopus 로고
    • iDNA-Prot: Identification of DNA Binding Proteins Using Random Forest with Grey Model
    • Lin WZ, Fang JA, Xiao X, Chou KC, (2011) iDNA-Prot: Identification of DNA Binding Proteins Using Random Forest with Grey Model. PLoS ONE 6: e24756.
    • (2011) PLoS ONE , vol.6
    • Lin, W.Z.1    Fang, J.A.2    Xiao, X.3    Chou, K.C.4
  • 22
    • 84855641685 scopus 로고    scopus 로고
    • iLoc-Hum: Using accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites
    • Chou KC, Wu ZC, Xiao X, (2012) iLoc-Hum: Using accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites. Molecular Biosystems 8: 629-641.
    • (2012) Molecular Biosystems , vol.8 , pp. 629-641
    • Chou, K.C.1    Wu, Z.C.2    Xiao, X.3
  • 23
    • 84868128310 scopus 로고    scopus 로고
    • iNuc-PhysChem: A Sequence-Based Predictor for Identifying Nucleosomes via Physicochemical Properties
    • Chen W, Lin H, Feng PM, Ding C, Zuo YC, et al. (2012) iNuc-PhysChem: A Sequence-Based Predictor for Identifying Nucleosomes via Physicochemical Properties. PLoS ONE 7: e47843.
    • (2012) PLoS ONE , vol.7
    • Chen, W.1    Lin, H.2    Feng, P.M.3    Ding, C.4    Zuo, Y.C.5
  • 24
    • 78649889548 scopus 로고    scopus 로고
    • S-alkylating labeling strategy for site-specific identification of the s-nitrosoproteome
    • Chen YJ, Ku WC, Lin PY, Chou HC, Khoo KH, (2010) S-alkylating labeling strategy for site-specific identification of the s-nitrosoproteome. J Proteome Res 9: 6417-6439.
    • (2010) J Proteome Res , vol.9 , pp. 6417-6439
    • Chen, Y.J.1    Ku, W.C.2    Lin, P.Y.3    Chou, H.C.4    Khoo, K.H.5
  • 25
    • 72449203319 scopus 로고    scopus 로고
    • Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology
    • Chou KC, (2009) Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology. Current Proteomics 6: 262-274.
    • (2009) Current Proteomics , vol.6 , pp. 262-274
    • Chou, K.C.1
  • 26
    • 0005008115 scopus 로고    scopus 로고
    • Evaluating the statistical significance of multiple distinct local alignments
    • In: Suhai S, editor New York: Plenum
    • Altschul SF (1997) Evaluating the statistical significance of multiple distinct local alignments. In: Suhai S, editor. Theoretical and Computational Methods in Genome Research. New York: Plenum. pp. 1-14.
    • (1997) Theoretical and Computational Methods in Genome Research , pp. 1-14
    • Altschul, S.F.1
  • 27
    • 0001514262 scopus 로고
    • Statistics of local complexity in amino acid sequences and sequence databases
    • Wootton JC, Federhen S, (1993) Statistics of local complexity in amino acid sequences and sequence databases. Comput Chem 17: 149-163.
    • (1993) Comput Chem , vol.17 , pp. 149-163
    • Wootton, J.C.1    Federhen, S.2
  • 28
    • 0022631926 scopus 로고
    • The folding type of a protein is relevant to the amino acid composition
    • Nakashima H, Nishikawa K, Ooi T, (1986) The folding type of a protein is relevant to the amino acid composition. J Biochem 99: 152-162.
    • (1986) J Biochem , vol.99 , pp. 152-162
    • Nakashima, H.1    Nishikawa, K.2    Ooi, T.3
  • 29
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudo amino acid composition
    • (Erratum: Ibid, 2001, Vol44, 60)
    • Chou KC, (2001) Prediction of protein cellular attributes using pseudo amino acid composition. PROTEINS: Structure, Function, and Genetics (Erratum: ibid, 2001, Vol44, 60) 43: 246-255.
    • (2001) PROTEINS: Structure, Function, and Genetics , vol.43 , pp. 246-255
    • Chou, K.C.1
  • 30
    • 12744279642 scopus 로고    scopus 로고
    • Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
    • Chou KC, (2005) Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes. Bioinformatics 21: 10-19.
    • (2005) Bioinformatics , vol.21 , pp. 10-19
    • Chou, K.C.1
  • 31
    • 78649324596 scopus 로고    scopus 로고
    • A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
    • Sahu SS, Panda G, (2010) A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction. Computational Biology and Chemistry 34: 320-327.
    • (2010) Computational Biology and Chemistry , vol.34 , pp. 320-327
    • Sahu, S.S.1    Panda, G.2
  • 32
    • 84855690179 scopus 로고    scopus 로고
    • Prediction of metalloproteinase family based on the concept of Chou's pseudo amino acid composition using a machine learning approach
    • Mohammad Beigi M, Behjati M, Mohabatkar H, (2011) Prediction of metalloproteinase family based on the concept of Chou's pseudo amino acid composition using a machine learning approach. Journal of Structural and Functional Genomics 12: 191-197.
    • (2011) Journal of Structural and Functional Genomics , vol.12 , pp. 191-197
    • Mohammad Beigi, M.1    Behjati, M.2    Mohabatkar, H.3
  • 33
    • 43149104120 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition to predict protein subcellular localization: an approach by incorporating evolutionary information and von Neumann entropies
    • Zhang SW, Zhang YL, Yang HF, Zhao CH, Pan Q, (2008) Using the concept of Chou's pseudo amino acid composition to predict protein subcellular localization: an approach by incorporating evolutionary information and von Neumann entropies. Amino Acids 34: 565-572.
    • (2008) Amino Acids , vol.34 , pp. 565-572
    • Zhang, S.W.1    Zhang, Y.L.2    Yang, H.F.3    Zhao, C.H.4    Pan, Q.5
  • 34
    • 84873572573 scopus 로고    scopus 로고
    • Prediction of Allergenic Proteins by Means of the Concept of Chou's Pseudo Amino Acid Composition and a Machine Learning Approach
    • Mohabatkar H, Beigi MM, Abdolahi K, Mohsenzadeh S, (2013) Prediction of Allergenic Proteins by Means of the Concept of Chou's Pseudo Amino Acid Composition and a Machine Learning Approach. Medicinal Chemistry 9: 133-137.
    • (2013) Medicinal Chemistry , vol.9 , pp. 133-137
    • Mohabatkar, H.1    Beigi, M.M.2    Abdolahi, K.3    Mohsenzadeh, S.4
  • 35
    • 84876053736 scopus 로고    scopus 로고
    • iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition
    • doi: 101093/nar/gks1450
    • Chen W, Feng PM, Lin H, Chou KC, (2012) iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition. Nucleic Acids Research doi:101093/nar/gks1450.
    • (2012) Nucleic Acids Research
    • Chen, W.1    Feng, P.M.2    Lin, H.3    Chou, K.C.4
  • 36
    • 84856475734 scopus 로고    scopus 로고
    • Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary Information
    • Nanni L, Lumini A, Gupta D, Garg A, (2012) Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary Information. IEEE/ACM Trans Comput Biol Bioinform 9: 467-475.
    • (2012) IEEE/ACM Trans Comput Biol Bioinform , vol.9 , pp. 467-475
    • Nanni, L.1    Lumini, A.2    Gupta, D.3    Garg, A.4
  • 37
    • 79953735805 scopus 로고    scopus 로고
    • Predicting protein folding rates using the concept of Chou's pseudo amino acid composition
    • Guo J, Rao N, Liu G, Yang Y, Wang G, (2011) Predicting protein folding rates using the concept of Chou's pseudo amino acid composition. Journal of Computational Chemistry 32: 1612-1617.
    • (2011) Journal of Computational Chemistry , vol.32 , pp. 1612-1617
    • Guo, J.1    Rao, N.2    Liu, G.3    Yang, Y.4    Wang, G.5
  • 38
    • 79955564229 scopus 로고    scopus 로고
    • Prediction of GABA(A) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
    • Mohabatkar H, Mohammad Beigi M, Esmaeili A, (2011) Prediction of GABA(A) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine. Journal of Theoretical Biology 281: 18-23.
    • (2011) Journal of Theoretical Biology , vol.281 , pp. 18-23
    • Mohabatkar, H.1    Mohammad Beigi, M.2    Esmaeili, A.3
  • 39
    • 78650099168 scopus 로고    scopus 로고
    • Supersecondary structure prediction using Chou's pseudo amino acid composition
    • Zou D, He Z, He J, Xia Y, (2011) Supersecondary structure prediction using Chou's pseudo amino acid composition. Journal of Computational Chemistry 32: 271-278.
    • (2011) Journal of Computational Chemistry , vol.32 , pp. 271-278
    • Zou, D.1    He, Z.2    He, J.3    Xia, Y.4
  • 40
    • 77958497871 scopus 로고    scopus 로고
    • Prediction of cyclin proteins using Chou's pseudo amino acid composition
    • Mohabatkar H, (2010) Prediction of cyclin proteins using Chou's pseudo amino acid composition. Protein & Peptide Letters 17: 1207-1214.
    • (2010) Protein & Peptide Letters , vol.17 , pp. 1207-1214
    • Mohabatkar, H.1
  • 41
    • 59649123088 scopus 로고    scopus 로고
    • Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
    • Georgiou DN, Karakasidis TE, Nieto JJ, Torres A, (2009) Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition. Journal of Theoretical Biology 257: 17-26.
    • (2009) Journal of Theoretical Biology , vol.257 , pp. 17-26
    • Georgiou, D.N.1    Karakasidis, T.E.2    Nieto, J.J.3    Torres, A.4
  • 42
    • 34548439881 scopus 로고    scopus 로고
    • Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
    • Zhou XB, Chen C, Li ZC, Zou XY, (2007) Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes. Journal of Theoretical Biology 248: 546-551.
    • (2007) Journal of Theoretical Biology , vol.248 , pp. 546-551
    • Zhou, X.B.1    Chen, C.2    Li, Z.C.3    Zou, X.Y.4
  • 43
    • 77649337793 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
    • Esmaeili M, Mohabatkar H, Mohsenzadeh S, (2010) Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses. Journal of Theoretical Biology 263: 203-209.
    • (2010) Journal of Theoretical Biology , vol.263 , pp. 203-209
    • Esmaeili, M.1    Mohabatkar, H.2    Mohsenzadeh, S.3
  • 44
    • 84868109035 scopus 로고    scopus 로고
    • Identifying protein quaternary structural attributes by incorporating physicochemical properties into the general form of Chou's PseAAC via discrete wavelet transform
    • Sun XY, Shi SP, Qiu JD, Suo SB, Huang SY, et al. (2012) Identifying protein quaternary structural attributes by incorporating physicochemical properties into the general form of Chou's PseAAC via discrete wavelet transform. Molecular BioSystems 8: 3178-3184.
    • (2012) Molecular BioSystems , vol.8 , pp. 3178-3184
    • Sun, X.Y.1    Shi, S.P.2    Qiu, J.D.3    Suo, S.B.4    Huang, S.Y.5
  • 45
    • 84865373769 scopus 로고    scopus 로고
    • Identifying GPCRs and their Types with Chou's Pseudo Amino Acid Composition: An Approach from Multi-scale Energy Representation and Position Specific Scoring Matrix
    • Zia Ur R, Khan A, (2012) Identifying GPCRs and their Types with Chou's Pseudo Amino Acid Composition: An Approach from Multi-scale Energy Representation and Position Specific Scoring Matrix. Protein & Peptide Letters 19: 890-903.
    • (2012) Protein & Peptide Letters , vol.19 , pp. 890-903
    • Zia Ur, R.1    Khan, A.2
  • 46
    • 84858833657 scopus 로고    scopus 로고
    • Discriminating Outer Membrane Proteins with Fuzzy K-Nearest Neighbor Algorithms Based on the General Form of Chou's PseAAC
    • Hayat M, Khan A, (2012) Discriminating Outer Membrane Proteins with Fuzzy K-Nearest Neighbor Algorithms Based on the General Form of Chou's PseAAC. Protein & Peptide Letters 19: 411-421.
    • (2012) Protein & Peptide Letters , vol.19 , pp. 411-421
    • Hayat, M.1    Khan, A.2
  • 47
    • 84859932176 scopus 로고    scopus 로고
    • PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou's pseudo-amino acid compositions
    • Du P, Wang X, Xu C, Gao Y, (2012) PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou's pseudo-amino acid compositions. Analytical Biochemistry 425: 117-119.
    • (2012) Analytical Biochemistry , vol.425 , pp. 117-119
    • Du, P.1    Wang, X.2    Xu, C.3    Gao, Y.4
  • 48
    • 34548770172 scopus 로고    scopus 로고
    • GANNPhos: a new phosphorylation site predictor based on a genetic algorithm integrated neural network
    • Tang YR, Chen YZ, Canchaya CA, Zhang Z, (2007) GANNPhos: a new phosphorylation site predictor based on a genetic algorithm integrated neural network. Protein Eng Des Sel 20: 405-412.
    • (2007) Protein Eng Des Sel , vol.20 , pp. 405-412
    • Tang, Y.R.1    Chen, Y.Z.2    Canchaya, C.A.3    Zhang, Z.4
  • 49
    • 0035030201 scopus 로고    scopus 로고
    • Using subsite coupling to predict signal peptides
    • Chou KC, (2001) Using subsite coupling to predict signal peptides. Protein Engineering 14: 75-79.
    • (2001) Protein Engineering , vol.14 , pp. 75-79
    • Chou, K.C.1
  • 52
    • 70349234481 scopus 로고    scopus 로고
    • The 1425G/A SNP in PRKCH is associated with ischemic stroke and cerebral hemorrhage in a Chinese population
    • Wu L, Shen Y, Liu X, Ma X, Xi B, et al. (2009) The 1425G/A SNP in PRKCH is associated with ischemic stroke and cerebral hemorrhage in a Chinese population. Stroke 40: 2973-2976.
    • (2009) Stroke , vol.40 , pp. 2973-2976
    • Wu, L.1    Shen, Y.2    Liu, X.3    Ma, X.4    Xi, B.5
  • 53
    • 34047272690 scopus 로고    scopus 로고
    • Regulation of HIF-1alpha stability through S-nitrosylation
    • Li F, Sonveaux P, Rabbani ZN, Liu S, Yan B, et al. (2007) Regulation of HIF-1alpha stability through S-nitrosylation. Mol Cell 26: 63-74.
    • (2007) Mol Cell , vol.26 , pp. 63-74
    • Li, F.1    Sonveaux, P.2    Rabbani, Z.N.3    Liu, S.4    Yan, B.5
  • 54
    • 0027219970 scopus 로고
    • A vectorized sequence-coupling model for predicting HIV protease cleavage sites in proteins
    • Chou KC, (1993) A vectorized sequence-coupling model for predicting HIV protease cleavage sites in proteins. Journal of Biological Chemistry 268: 16938-16948.
    • (1993) Journal of Biological Chemistry , vol.268 , pp. 16938-16948
    • Chou, K.C.1
  • 55
    • 0035178419 scopus 로고    scopus 로고
    • Prediction of protein signal sequences and their cleavage sites
    • Chou KC, (2001) Prediction of protein signal sequences and their cleavage sites. PROTEINS: Structure, Function, and Genetics 42: 136-139.
    • (2001) PROTEINS: Structure, Function, and Genetics , vol.42 , pp. 136-139
    • Chou, K.C.1
  • 56
    • 0035748859 scopus 로고    scopus 로고
    • Prediction of signal peptides using scaled window
    • Chou KC, (2001) Prediction of signal peptides using scaled window. Peptides 22: 1973-1979.
    • (2001) Peptides , vol.22 , pp. 1973-1979
    • Chou, K.C.1
  • 57
    • 78650746655 scopus 로고    scopus 로고
    • Cell-PLoc 2.0: An improved package of web-servers for predicting subcellular localization of proteins in various organisms (doi:10.4236/ns.2010.210136)
    • (openly accessible at)
    • Chou KC, Shen HB, (2010) Cell-PLoc 2.0: An improved package of web-servers for predicting subcellular localization of proteins in various organisms (doi:10.4236/ns.2010.210136). Natural Science 2: 1090-1103 (openly accessible at http://www.scirp.org/journal/NS/).
    • (2010) Natural Science , vol.2 , pp. 1090-1103
    • Chou, K.C.1    Shen, H.B.2
  • 58
    • 80054071147 scopus 로고    scopus 로고
    • MemHyb: Predicting membrane protein types by hybridizing SAAC and PSSM
    • Hayat M, Khan A, (2012) MemHyb: Predicting membrane protein types by hybridizing SAAC and PSSM. J ournal of Theoretical Biology 292: 93-102.
    • (2012) J Ournal of Theoretical Biology , vol.292 , pp. 93-102
    • Hayat, M.1    Khan, A.2
  • 59
    • 84864921059 scopus 로고    scopus 로고
    • Comprehensive comparative analysis and identification of RNA-binding protein domains: Multi-class classification and feature selection
    • Jahandideh S, Srinivasasainagendra V, Zhi D, (2012) Comprehensive comparative analysis and identification of RNA-binding protein domains: Multi-class classification and feature selection. J Theor Biol 312: 65-75.
    • (2012) J Theor Biol , vol.312 , pp. 65-75
    • Jahandideh, S.1    Srinivasasainagendra, V.2    Zhi, D.3
  • 60
    • 84864770395 scopus 로고    scopus 로고
    • Wavelet images and Chou's pseudo amino acid composition for protein classification
    • Nanni L, Brahnam S, Lumini A, (2012) Wavelet images and Chou's pseudo amino acid composition for protein classification. Amino Acids 43: 657-665.
    • (2012) Amino Acids , vol.43 , pp. 657-665
    • Nanni, L.1    Brahnam, S.2    Lumini, A.3
  • 61
    • 84865778459 scopus 로고    scopus 로고
    • Predicting Protein Solubility by the General Form of Chou's Pseudo Amino Acid Composition: Approached from Chaos Game Representation and Fractal Dimension
    • Niu XH, Hu XH, Shi F, Xia JB, (2012) Predicting Protein Solubility by the General Form of Chou's Pseudo Amino Acid Composition: Approached from Chaos Game Representation and Fractal Dimension. Protein & Peptide Letters 19: 940-948.
    • (2012) Protein & Peptide Letters , vol.19 , pp. 940-948
    • Niu, X.H.1    Hu, X.H.2    Shi, F.3    Xia, J.B.4
  • 62
    • 84870044593 scopus 로고    scopus 로고
    • Predicting Secretory Proteins of Malaria Parasite by Incorporating Sequence Evolution Information into Pseudo Amino Acid Composition via Grey System Model
    • Lin WZ, Fang JA, Xiao X, Chou KC, (2012) Predicting Secretory Proteins of Malaria Parasite by Incorporating Sequence Evolution Information into Pseudo Amino Acid Composition via Grey System Model. PLoS One 7: e49040.
    • (2012) PLoS One , vol.7
    • Lin, W.Z.1    Fang, J.A.2    Xiao, X.3    Chou, K.C.4
  • 63
    • 8844219516 scopus 로고    scopus 로고
    • Prediction of phosphorylation sites using SVMs
    • Kim JH, Lee J, Oh B, Kimm K, Koh I, (2004) Prediction of phosphorylation sites using SVMs. Bioinformatics 20: 3179-3184.
    • (2004) Bioinformatics , vol.20 , pp. 3179-3184
    • Kim, J.H.1    Lee, J.2    Oh, B.3    Kimm, K.4    Koh, I.5
  • 64
    • 34547555987 scopus 로고    scopus 로고
    • KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns
    • Wong YH, Lee TY, Liang HK, Huang CM, Wang TY, et al. (2007) KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns. Nucleic Acids Res 35: W588-594.
    • (2007) Nucleic Acids Res , vol.35
    • Wong, Y.H.1    Lee, T.Y.2    Liang, H.K.3    Huang, C.M.4    Wang, T.Y.5
  • 65
    • 70349916049 scopus 로고    scopus 로고
    • Incorporating support vector machine for identifying protein tyrosine sulfation sites
    • Chang WC, Lee TY, Shien DM, Hsu JB, Horng JT, et al. (2009) Incorporating support vector machine for identifying protein tyrosine sulfation sites. J Comput Chem 30: 2526-2537.
    • (2009) J Comput Chem , vol.30 , pp. 2526-2537
    • Chang, W.C.1    Lee, T.Y.2    Shien, D.M.3    Hsu, J.B.4    Horng, J.T.5
  • 66
    • 62849118051 scopus 로고    scopus 로고
    • Computational Identification of Protein Methylation Sites through Bi-Profile Bayes Feature Extraction
    • Shao JL, Xu D, Tsai S, Wang YF, Ngar S, (2009) Computational Identification of Protein Methylation Sites through Bi-Profile Bayes Feature Extraction. PLoS One 4: e4920.
    • (2009) PLoS One , vol.4
    • Shao, J.L.1    Xu, D.2    Tsai, S.3    Wang, Y.F.4    Ngar, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.