-
1
-
-
34447643391
-
A combined approach for the classification of G protein-coupled receptors and its application to detect GPCR splice variants
-
Eo, H.S., Choi, J.P., Noh, S.J., Hur, C.G., Kim, W. A combined approach for the classification of G protein-coupled receptors and its application to detect GPCR splice variants. Comput. Biol. Chem., 2007, 31, 246-256.
-
(2007)
Comput. Biol. Chem
, vol.31
, pp. 246-256
-
-
Eo, H.S.1
Choi, J.P.2
Noh, S.J.3
Hur, C.G.4
Kim, W.5
-
2
-
-
34447633368
-
Conformational complexity of G-protein-coupled receptors
-
Kobilka, B.C., Deupi, X. Conformational complexity of G-protein-coupled receptors. Trends Pharmacol. Sci., 2007, 28, 397-405
-
(2007)
Trends Pharmacol. Sci
, vol.28
, pp. 397-405
-
-
Kobilka, B.C.1
Deupi, X.2
-
3
-
-
33745712184
-
Statistical analysis and prediction of functional residues effective for GPCR-G-protein coupling selectivity
-
Muramatsu, T., Suwa, M. Statistical analysis and prediction of functional residues effective for GPCR-G-protein coupling selectivity. Protein Eng. Des. Sel., 2006, 19, 277-283.
-
(2006)
Protein Eng. Des. Sel
, vol.19
, pp. 277-283
-
-
Muramatsu, T.1
Suwa, M.2
-
4
-
-
34248633775
-
Prediction of GPCR-G protein coupling specificity using features of sequences and biological functions
-
Ono, T., Hishigaki, H. Prediction of GPCR-G protein coupling specificity using features of sequences and biological functions. Genomics Proteomics Bioinformatics, 2006, 4, 238-244
-
(2006)
Genomics Proteomics Bioinformatics
, vol.4
, pp. 238-244
-
-
Ono, T.1
Hishigaki, H.2
-
5
-
-
36448995359
-
High-resolution crystal structure of an engineered human 2-Adrenergic G protein-coupled receptor
-
Cherezov, V., Rosenbaum, D.M., Hanson, M.A., Rasmussen, S.G., Thian, F.S., Kobilka, T., Choi, H.J., Kuhn, P., Weis, W., Kobilka, B.K., Stevens, R.C. High-resolution crystal structure of an engineered human 2-Adrenergic G protein-coupled receptor. Science, 2007, 318, 1258-1265.
-
(2007)
Science
, vol.318
, pp. 1258-1265
-
-
Cherezov, V.1
Rosenbaum, D.M.2
Hanson, M.A.3
Rasmussen, S.G.4
Thian, F.S.5
Kobilka, T.6
Choi, H.J.7
Kuhn, P.8
Weis, W.9
Kobilka, B.K.10
Stevens, R.C.11
-
6
-
-
0034604451
-
Crystal Structure of Rhodopsin: A G Protein-Coupled Receptor
-
Palczewski, K., Kumasaka, T., Hori, T., Behnke, C.A., Motoshima, H., Fox, B.A., Trong, I.L., Teller, D.C., Okada, T., Stenkamp, R.E., Yanmamoto, M., Miyano, M. Crystal Structure of Rhodopsin: A G Protein-Coupled Receptor. Science, 2000, 289, 739-745
-
(2000)
Science
, vol.289
, pp. 739-745
-
-
Palczewski, K.1
Kumasaka, T.2
Hori, T.3
Behnke, C.A.4
Motoshima, H.5
Fox, B.A.6
Trong, I.L.7
Teller, D.C.8
Okada, T.9
Stenkamp, R.E.10
Yanmamoto, M.11
Miyano, M.12
-
7
-
-
0036166451
-
Classifying G-protein coupled receptors with support vector machines
-
Karchin, R., Karplus, K., Haussler, D. Classifying G-protein coupled receptors with support vector machines. Bioinformatics, 2002, 18, 147-159.
-
(2002)
Bioinformatics
, vol.18
, pp. 147-159
-
-
Karchin, R.1
Karplus, K.2
Haussler, D.3
-
8
-
-
0037252680
-
GPCRDB information system for G protein-coupled receptors
-
Horn, F., Bettler, E., Oliveira, L., Campagne, F., Cohen, F.E., Vriend, G. GPCRDB information system for G protein-coupled receptors. Nucleic. Acids. Res., 2003, 31, 294-297.
-
(2003)
Nucleic. Acids. Res
, vol.31
, pp. 294-297
-
-
Horn, F.1
Bettler, E.2
Oliveira, L.3
Campagne, F.4
Cohen, F.E.5
Vriend, G.6
-
9
-
-
3242892058
-
GPCRpred: An SVM-based method for prediction of families and subfamilies of G-protein coupled receptors
-
Bhasin, M., Raghava, G. GPCRpred: An SVM-based method for prediction of families and subfamilies of G-protein coupled receptors. Nucleic. Acids. Res., 2004, 32, 383-389.
-
(2004)
Nucleic. Acids. Res
, vol.32
, pp. 383-389
-
-
Bhasin, M.1
Raghava, G.2
-
10
-
-
27944445874
-
Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks
-
Sgourakis, N.G., Bagos, P.G., HamOdrakas, S.K. Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks. Bioinformatics, 2005, 21, 4101-4106.
-
(2005)
Bioinformatics
, vol.21
, pp. 4101-4106
-
-
Sgourakis, N.G.1
Bagos, P.G.2
Hamodrakas, S.K.3
-
11
-
-
34247112742
-
Simple alignment-free methods for protein classification: A case study from G-protein-coupled receptors
-
Strope, P.K., Moriyama, E.N. Simple alignment-free methods for protein classification: A case study from G-protein-coupled receptors. Genomics, 2007, 89, 602-612.
-
(2007)
Genomics
, vol.89
, pp. 602-612
-
-
Strope, P.K.1
Moriyama, E.N.2
-
12
-
-
0036767228
-
Bioinformatical analysis of G-protein-coupled receptors
-
Chou, K.C., Elrod, D. Bioinformatical analysis of G-protein-coupled receptors. Proteome Res., 2002, 1, 429-433.
-
(2002)
Proteome Res
, vol.1
, pp. 429-433
-
-
Chou, K.C.1
Elrod, D.2
-
13
-
-
23944438427
-
Prediction of G-Protein-coupled receptor classes
-
Chou, K.C. Prediction of G-Protein-coupled receptor classes. Proteome Res., 2005, 1, 1413-1418.
-
(2005)
Proteome Res
, vol.1
, pp. 1413-1418
-
-
Chou, K.C.1
-
14
-
-
33745102264
-
Classifying G protein-coupled receptors and nuclear receptors on the basis of protein power spectrum from fast Fourier transform
-
Guo, Y.Z., Li, M., Lu, M., Wen, Z., Wang, K., Li, G., Wu, J. Classifying G protein-coupled receptors and nuclear receptors on the basis of protein power spectrum from fast Fourier transform. Amino Acids, 2006, 30, 397-402.
-
(2006)
Amino Acids
, vol.30
, pp. 397-402
-
-
Guo, Y.Z.1
Li, M.2
Lu, M.3
Wen, Z.4
Wang, K.5
Li, G.6
Wu, J.7
-
15
-
-
0035874091
-
Prediction of protein cellular attributes using pseudo amino acid composition
-
Chou, K.C. Prediction of protein cellular attributes using pseudo amino acid composition. Proteins, 2001, 43, 246-255
-
(2001)
Proteins
, vol.43
, pp. 246-255
-
-
Chou, K.C.1
-
16
-
-
0029157083
-
Review: Prediction of protein structural classes
-
Chou, K.C., Zhang, C.T. Review: Prediction of protein structural classes. Crit. Rev. Biochem. Mol. Biol., 1995, 30, 275-349
-
(1995)
Crit. Rev. Biochem. Mol. Biol
, vol.30
, pp. 275-349
-
-
Chou, K.C.1
Zhang, C.T.2
-
17
-
-
33750475941
-
Using pseudo-amino acid composition and support vector machine to predict protein structural class
-
Chen, C., Tian, Y.X., Zou, X.Y., Cai, P.X., Mo, J.Y. Using pseudo-amino acid composition and support vector machine to predict protein structural class. J. Theor. Biol., 2006a, 243, 444-448
-
(2006)
J. Theor. Biol
, vol.243
, pp. 444-448
-
-
Chen, C.1
Tian, Y.X.2
Zou, X.Y.3
Cai, P.X.4
Mo, J.Y.5
-
18
-
-
33748287103
-
Predicting protein structural class with pseudo-amino acid composition and support vector machine fusion network
-
Chen, C., Zhou, X., Tian, Y., Zou, X., Cai, P. Predicting protein structural class with pseudo-amino acid composition and support vector machine fusion network. Anal. Biochem., 2006b, 357, 116-121.
-
(2006)
Anal. Biochem
, vol.357
, pp. 116-121
-
-
Chen, C.1
Zhou, X.2
Tian, Y.3
Zou, X.4
Cai, P.5
-
19
-
-
38149120433
-
Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach
-
Li, F.M., Li, Q.Z. Using pseudo amino acid composition to predict protein subnuclear location with improved hybrid approach. Amino Acids, 2008, 34, 119-125.
-
(2008)
Amino Acids
, vol.34
, pp. 119-125
-
-
Li, F.M.1
Li, Q.Z.2
-
20
-
-
34249807035
-
Using Pseudo Amino Acid Composition to Predict Protein Structural Class: Approached by Incorporating 400 Dipeptide Components
-
Lin, H., Li, Q.Z. Using Pseudo Amino Acid Composition to Predict Protein Structural Class: Approached by Incorporating 400 Dipeptide Components. J. Comput. Chem., 2007, 28, 1463-1466
-
(2007)
J. Comput. Chem
, vol.28
, pp. 1463-1466
-
-
Lin, H.1
Li, Q.Z.2
-
21
-
-
34548697717
-
Prediction of protein structure classes with pseudo amino acid composition and fuzzy support vector machine network
-
Ding, Y.S., Zhang, T.L., Chou, K.C. Prediction of protein structure classes with pseudo amino acid composition and fuzzy support vector machine network. Protein Pept. Lett., 2007, 14, 811-815
-
(2007)
Protein Pept. Lett
, vol.14
, pp. 811-815
-
-
Ding, Y.S.1
Zhang, T.L.2
Chou, K.C.3
-
22
-
-
36348994911
-
Prediction protein structural classes with pseudo amino acid composition: Approximate entropy and hydrophobicity pattern
-
Zhang, T.L., Ding, Y.S., Chou, K.C. Prediction protein structural classes with pseudo amino acid composition: Approximate entropy and hydrophobicity pattern. J. Theor. Biol., 2008, 250, 186-193
-
(2008)
J. Theor. Biol
, vol.250
, pp. 186-193
-
-
Zhang, T.L.1
Ding, Y.S.2
Chou, K.C.3
-
23
-
-
47549084414
-
Using grey dynamic modeling and pseudo amino acid composition to predict protein structural classes
-
Xiao, X., Lin, W.Z., Chou, K.C. Using grey dynamic modeling and pseudo amino acid composition to predict protein structural classes. J. Comput. Chem., 2008, 29, 2018-2024.
-
(2008)
J. Comput. Chem
, vol.29
, pp. 2018-2024
-
-
Xiao, X.1
Lin, W.Z.2
Chou, K.C.3
-
24
-
-
51349105695
-
Predicting protein structural classes with pseudo amino acid composition: An approach using geometric moments of cellular automaton image
-
Xiao, X., Wang, P., Chou, K.C. Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image. J. Theor. Biol., 2008, 254, 691-696.
-
(2008)
J. Theor. Biol
, vol.254
, pp. 691-696
-
-
Xiao, X.1
Wang, P.2
Chou, K.C.3
-
25
-
-
61549096128
-
Prediction of Protein Secondary Structure Content by Using the Concept of Chou's Pseudo Amino Acid Composition and Support Vector Machine
-
Chen, C., Chen, L., Zou, X., Cai, P. Prediction of Protein Secondary Structure Content by Using the Concept of Chou's Pseudo Amino Acid Composition and Support Vector Machine. Protein Pept. Lett., 2009, 16, 27-31.
-
(2009)
Protein Pept. Lett
, vol.16
, pp. 27-31
-
-
Chen, C.1
Chen, L.2
Zou, X.3
Cai, P.4
-
26
-
-
0141815538
-
Predicting protein quaternary structure by pseudo amino acid composition
-
Chou, K.C., Cai, Y.D. Predicting protein quaternary structure by pseudo amino acid composition. Proteins, 2003, 53, 282-289
-
(2003)
Proteins
, vol.53
, pp. 282-289
-
-
Chou, K.C.1
Cai, Y.D.2
-
27
-
-
50949129207
-
Using Chou's pseudo amino acid composition to predict protein quaternary structure: A sequence-segmented PseAAC approach
-
Zhang, S.W., Chen, W., Yang, F., Pan, Q. Using Chou's pseudo amino acid composition to predict protein quaternary structure: a sequence-segmented PseAAC approach. Amino Acids, 2008, 35, 591-598.
-
(2008)
Amino Acids
, vol.35
, pp. 591-598
-
-
Zhang, S.W.1
Chen, W.2
Yang, F.3
Pan, Q.4
-
28
-
-
65249148484
-
QuatIdent: A web server for identifying protein quaternary structural attribute by fusing functional domain and sequential evolution information
-
Shen, H.B., Chou, K.C. QuatIdent: A web server for identifying protein quaternary structural attribute by fusing functional domain and sequential evolution information. J. Proteome Res., 2009, 8, 1577-1584.
-
(2009)
J. Proteome Res
, vol.8
, pp. 1577-1584
-
-
Shen, H.B.1
Chou, K.C.2
-
29
-
-
62649087986
-
Predicting protein quaternary structural attribute by hybridizing functional domain composition and pseudo amino acid composition
-
Xiao, X., Wang, P., Chou, K.C. Predicting protein quaternary structural attribute by hybridizing functional domain composition and pseudo amino acid composition. J. Appl. Crystallogr., 2009, 42, 169-173.
-
(2009)
J. Appl. Crystallogr
, vol.42
, pp. 169-173
-
-
Xiao, X.1
Wang, P.2
Chou, K.C.3
-
30
-
-
59649123088
-
Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
-
Georgiou, D.N., Karakasidis, T.E., Nieto, J.J., Torres, A. Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition. J. Theor. Biol., 2009, 257, 17-26.
-
(2009)
J. Theor. Biol
, vol.257
, pp. 17-26
-
-
Georgiou, D.N.1
Karakasidis, T.E.2
Nieto, J.J.3
Torres, A.4
-
31
-
-
34249318001
-
Euk-mPLoc: A fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites
-
Chou, K.C., Shen, H.B. Euk-mPLoc: A fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites. J. Proteome Res., 2007b, 6, 1728-1734
-
(2007)
J. Proteome Res
, vol.6
, pp. 1728-1734
-
-
Chou, K.C.1
Shen, H.B.2
-
32
-
-
7444264582
-
Predicting subcellular localization of proteins by hybridizing functional domain composition and pseudoamino acid composition
-
Chou, K.C., Cai, Y.D. Predicting subcellular localization of proteins by hybridizing functional domain composition and pseudoamino acid composition. J. Cell Biochem., 2004, 91, 1197-1203.
-
(2004)
J. Cell Biochem
, vol.91
, pp. 1197-1203
-
-
Chou, K.C.1
Cai, Y.D.2
-
33
-
-
33748878164
-
Methods for predicting bacterial protein subcellular localization
-
Gardy, J.L., Brinkman, F.S.L. Methods for predicting bacterial protein subcellular localization. Nat. Rev. Microbiol., 2006, 4,741-751.
-
(2006)
Nat. Rev. Microbiol
, vol.4
, pp. 741-751
-
-
Gardy, J.L.1
Brinkman, F.S.L.2
-
34
-
-
33748944288
-
Predicting protein subcellular location by fusing multiple classifiers
-
Chou, K.C., Shen, H.B. Predicting protein subcellular location by fusing multiple classifiers. J. Cell Biochem., 2006, 99, 517-527.
-
(2006)
J. Cell Biochem
, vol.99
, pp. 517-527
-
-
Chou, K.C.1
Shen, H.B.2
-
35
-
-
39449105071
-
Cell-PLoc: A package of web-servers for predicting subcellular localization of proteins in various organisms
-
Chou, K.C., Shen, H.B. Cell-PLoc: A package of web-servers for predicting subcellular localization of proteins in various organisms. Nat. Protoc., 2008, 3, 153-162.
-
(2008)
Nat. Protoc
, vol.3
, pp. 153-162
-
-
Chou, K.C.1
Shen, H.B.2
-
36
-
-
47249153247
-
Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach
-
Li, F.M., Li, Q.Z. Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach. Protein. Pept. Lett., 2008, 15, 612-616.
-
(2008)
Protein. Pept. Lett
, vol.15
, pp. 612-616
-
-
Li, F.M.1
Li, Q.Z.2
-
37
-
-
33847668306
-
Hum-mPLoc: An ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites
-
Shen, H.B., Chou, K.C. Hum-mPLoc: An ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites. Biochem. Biophys. Res. Comm., 2007, 355, 1006-1011.
-
(2007)
Biochem. Biophys. Res. Comm
, vol.355
, pp. 1006-1011
-
-
Shen, H.B.1
Chou, K.C.2
-
38
-
-
33846605183
-
Large-scale plant protein subcellular location prediction
-
Chou, K.C., Shen, H.B. Large-scale plant protein subcellular location prediction. J. Cell Biochem., 2007, 100, 665-678.
-
(2007)
J. Cell Biochem
, vol.100
, pp. 665-678
-
-
Chou, K.C.1
Shen, H.B.2
-
39
-
-
33745759451
-
Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization
-
Chou, K.C., Shen, H.B. Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization. Biochem. Biophys. Res. Commun., 2006, 347, 150-157.
-
(2006)
Biochem. Biophys. Res. Commun
, vol.347
, pp. 150-157
-
-
Chou, K.C.1
Shen, H.B.2
-
40
-
-
33847637338
-
Euk-PLoc: An ensemble classifier for large-scale eukaryotic protein subcellular location prediction
-
Shen, H.B., Yang, J., Chou, K.C. Euk-PLoc: an ensemble classifier for large-scale eukaryotic protein subcellular location prediction. Amino Acids, 2007, 33, 57-67.
-
(2007)
Amino Acids
, vol.33
, pp. 57-67
-
-
Shen, H.B.1
Yang, J.2
Chou, K.C.3
-
41
-
-
33845423991
-
Large-scale predictions of Gram-negative bacterial protein subcellular locations
-
Chou, K.C., Shen, H.B. Large-scale predictions of Gram-negative bacterial protein subcellular locations. J. Proteome Res., 2006, 5, 3420-3428.
-
(2006)
J. Proteome Res
, vol.5
, pp. 3420-3428
-
-
Chou, K.C.1
Shen, H.B.2
-
42
-
-
33847080827
-
Gpos-PLoc: An ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins
-
Shen, H.B., Chou, K.C. Gpos-PLoc: An ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins. Protein Eng. Des. Sel., 2007a, 20, 39-46.
-
(2007)
Protein Eng. Des. Sel
, vol.20
, pp. 39-46
-
-
Shen, H.B.1
Chou, K.C.2
-
43
-
-
33847260136
-
Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells
-
Shen, H.B., Chou, K.C. Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells. Biopolymers, 2007b, 85, 233-240.
-
(2007)
Biopolymers
, vol.85
, pp. 233-240
-
-
Shen, H.B.1
Chou, K.C.2
-
44
-
-
49449087313
-
Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition
-
Lin, H., Ding, H., Guo, F.B., Zhang, A.Y., Huang, J. Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition. Protein. Pept. Lett., 2008, 15, 739-744.
-
(2008)
Protein. Pept. Lett
, vol.15
, pp. 739-744
-
-
Lin, H.1
Ding, H.2
Guo, F.B.3
Zhang, A.Y.4
Huang, J.5
-
45
-
-
43149104120
-
Using the concept of Chou's pseudo amino acid composition to predict protein subcellular localization: An approach by incorporating evolutionary information and von Neumann entropies
-
Zhang, S.W., Zhang, Y.L., Yang, H.F., Zhao, C.H., Pan, Q. Using the concept of Chou's pseudo amino acid composition to predict protein subcellular localization: an approach by incorporating evolutionary information and von Neumann entropies. Amino Acids, 2008, 34, 565-572.
-
(2008)
Amino Acids
, vol.34
, pp. 565-572
-
-
Zhang, S.W.1
Zhang, Y.L.2
Yang, H.F.3
Zhao, C.H.4
Pan, Q.5
-
46
-
-
26844455291
-
Predicting protein subnuclear location with optimized evidence-theoretic K-nearest classifier and pseudo amino acid composition
-
Shen, H.B., Chou, K.C. Predicting protein subnuclear location with optimized evidence-theoretic K-nearest classifier and pseudo amino acid composition. Biochem. Biophys. Res. Comm., 2005, 337, 752-756.
-
(2005)
Biochem. Biophys. Res. Comm
, vol.337
, pp. 752-756
-
-
Shen, H.B.1
Chou, K.C.2
-
47
-
-
34447321808
-
Using pseudo amino acid composition to predict protein subnuclear localization: Approached with PSSM
-
Mundra, P., Kumar, M., Kumar, K.K., Jayaraman, V.K., Kulkarni, B.D. Using pseudo amino acid composition to predict protein subnuclear localization: Approached with PSSM. Pattern Recogn. Lett., 2007, 28, 1610-1615.
-
(2007)
Pattern Recogn. Lett
, vol.28
, pp. 1610-1615
-
-
Mundra, P.1
Kumar, M.2
Kumar, K.K.3
Jayaraman, V.K.4
Kulkarni, B.D.5
-
48
-
-
43149099231
-
Using Chou's pseudo amino acid composition based on approximate entropy and an ensemble of AdaBoost classifiers to predict protein subnuclear location
-
Jiang, X., Wei, R., Zhao, Y., Zhang, T. Using Chou's pseudo amino acid composition based on approximate entropy and an ensemble of AdaBoost classifiers to predict protein subnuclear location. Amino Acids, 2008, 34, 669-675.
-
(2008)
Amino Acids
, vol.34
, pp. 669-675
-
-
Jiang, X.1
Wei, R.2
Zhao, Y.3
Zhang, T.4
-
49
-
-
33846010187
-
Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical features of segmented sequence
-
Du, P., Li, Y. Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical features of segmented sequence. BMC Bioinformatics, 2006, 7, 518.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 518
-
-
Du, P.1
Li, Y.2
-
50
-
-
43149097851
-
Genetic programming for creating Chou's pseudo amino acid based features for submitochondria localization
-
Nanni, L., Lumini, A. Genetic programming for creating Chou's pseudo amino acid based features for submitochondria localization. Amino Acids, 2008, 34, 653-660.
-
(2008)
Amino Acids
, vol.34
, pp. 653-660
-
-
Nanni, L.1
Lumini, A.2
-
51
-
-
33749596030
-
Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification
-
Mondal, S., Bhavna, R., Mohan Babu, R., Ramakumar, S. Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification. J. Theor. Biol., 2006, 243, 252-260.
-
(2006)
J. Theor. Biol
, vol.243
, pp. 252-260
-
-
Mondal, S.1
Bhavna, R.2
Mohan Babu, R.3
Ramakumar, S.4
-
52
-
-
33846524311
-
Predicting conotoxin superfamily and family by using pseudo amino acid composition and modified Mahalanobis discriminant
-
Lin, H., Li, Q.Z. Predicting conotoxin superfamily and family by using pseudo amino acid composition and modified Mahalanobis discriminant. Biochem. Biophys. Res. Comm., 2007, 354, 548-551.
-
(2007)
Biochem. Biophys. Res. Comm
, vol.354
, pp. 548-551
-
-
Lin, H.1
Li, Q.Z.2
-
53
-
-
25144470285
-
Low-frequency Fourier spectrum for predicting membrane protein types
-
Liu, H., Wang, M., Chou, K.C. Low-frequency Fourier spectrum for predicting membrane protein types. Biochem. Biophys. Res. Comm., 2005, 336, 737-739.
-
(2005)
Biochem. Biophys. Res. Comm
, vol.336
, pp. 737-739
-
-
Liu, H.1
Wang, M.2
Chou, K.C.3
-
54
-
-
22144487766
-
Using optimized evidence-theoretic Knearest neighbor classifier and pseudo amino acid composition to predict membrane protein types
-
Shen, H.B., Chou, K.C. Using optimized evidence-theoretic Knearest neighbor classifier and pseudo amino acid composition to predict membrane protein types. Biochem. Biophys. Res. Commun., 2005, 334, 288-292.
-
(2005)
Biochem. Biophys. Res. Commun
, vol.334
, pp. 288-292
-
-
Shen, H.B.1
Chou, K.C.2
-
55
-
-
33748449804
-
Using stacked generalization to predict membrane protein types based on pseudo amino acid composition
-
Wang, S.Q., Yang, J., Chou, K.C. Using stacked generalization to predict membrane protein types based on pseudo amino acid composition. J. Theor. Biol., 2006, 242, 941-946.
-
(2006)
J. Theor. Biol
, vol.242
, pp. 941-946
-
-
Wang, S.Q.1
Yang, J.2
Chou, K.C.3
-
56
-
-
33748150984
-
For predicting membrane protein types from pseudo amino acid composition
-
Shen, H.B., Yang, J., Chou, K.C. Fuzzy KNN for predicting membrane protein types from pseudo amino acid composition. J. Theor. Biol., 2006, 240, 9-13.
-
(2006)
J. Theor. Biol
, vol.240
, pp. 9-13
-
-
Shen, H.B.1
Yang, J.2
Chou, K.C.3
Fuzzy, K.N.N.4
-
57
-
-
34447095147
-
MemType-2L: A Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM
-
Chou, K.C., Shen, H.B. MemType-2L: A Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM. Biochem. Biophys. Res. Comm., 2007, 360, 339-345.
-
(2007)
Biochem. Biophys. Res. Comm
, vol.360
, pp. 339-345
-
-
Chou, K.C.1
Shen, H.B.2
-
58
-
-
42749090472
-
The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
-
Lin, H. The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition. J. Theor. Biol., 2008, 252, 350-356.
-
(2008)
J. Theor. Biol
, vol.252
, pp. 350-356
-
-
Lin, H.1
-
59
-
-
43549087105
-
Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: An approach by approximate entropy
-
Jiang, X., Wei, R., Zhang, T.L., Gu, Q. Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: an approach by approximate entropy. Protein Pept. Lett., 2008, 15, 392-396.
-
(2008)
Protein Pept. Lett
, vol.15
, pp. 392-396
-
-
Jiang, X.1
Wei, R.2
Zhang, T.L.3
Gu, Q.4
-
60
-
-
34548009150
-
Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo amino acid composition
-
Chen, Y.L., Li, Q.Z. Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo amino acid composition. J. Theor. Biol., 2007, 248, 377-381.
-
(2007)
J. Theor. Biol
, vol.248
, pp. 377-381
-
-
Chen, Y.L.1
Li, Q.Z.2
-
61
-
-
33947390931
-
Prediction of the subcellular location of apoptosis proteins
-
Chen, Y.L., Li, Q.Z. Prediction of the subcellular location of apoptosis proteins. J. Theor. Biol., 2007, 245, 775-783.
-
(2007)
J. Theor. Biol
, vol.245
, pp. 775-783
-
-
Chen, Y.L.1
Li, Q.Z.2
-
62
-
-
48649105466
-
Using Chou's pseudo amino acid composition to predict subcellular localization of apoptosis proteins: An approach with immune genetic algorithm-based ensemble classifier
-
Ding, Y.S., Zhang, T.L. Using Chou's pseudo amino acid composition to predict subcellular localization of apoptosis proteins: an approach with immune genetic algorithm-based ensemble classifier. Pattern Recogn. Lett., 2008, 29, 1887-1892.
-
(2008)
Pattern Recogn. Lett
, vol.29
, pp. 1887-1892
-
-
Ding, Y.S.1
Zhang, T.L.2
-
63
-
-
70350437815
-
Prediction of Subcellular Localization of Apoptosis Protein Using Chou's Pseudo Amino Acid Composition
-
Lin, H., Wang, H., Ding, H., Chen, Y.L., Li, Q.Z. Prediction of Subcellular Localization of Apoptosis Protein Using Chou's Pseudo Amino Acid Composition. Acta Biotheor., 2009, 57, 321-330.
-
(2009)
Acta Biotheor
, vol.57
, pp. 321-330
-
-
Lin, H.1
Wang, H.2
Ding, H.3
Chen, Y.L.4
Li, Q.Z.5
-
64
-
-
7244251950
-
Predicting enzyme family class in a hybridization space
-
Chou, K.C., Cai, Y.D. Predicting enzyme family class in a hybridization space. Protein Sci., 2004, 13, 2857-2863.
-
(2004)
Protein Sci
, vol.13
, pp. 2857-2863
-
-
Chou, K.C.1
Cai, Y.D.2
-
65
-
-
12744279642
-
Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
-
Chou, K.C. Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes. Bioinformatics, 2005, 21, 10-19.
-
(2005)
Bioinformatics
, vol.21
, pp. 10-19
-
-
Chou, K.C.1
-
66
-
-
34548439881
-
Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
-
Zhou, X.B., Chen, C., Li, Z.C., Zou, X.Y. Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes. J. Theor. Biol., 2007, 248, 546-551.
-
(2007)
J. Theor. Biol
, vol.248
, pp. 546-551
-
-
Zhou, X.B.1
Chen, C.2
Li, Z.C.3
Zou, X.Y.4
-
67
-
-
35348973511
-
EzyPred: A top-down approach for predicting enzyme functional classes and subclasses
-
Shen, H.B., Chou, K.C. EzyPred: A top-down approach for predicting enzyme functional classes and subclasses. Biochem. Biophys. Res. Comm., 2007, 364, 53-59.
-
(2007)
Biochem. Biophys. Res. Comm
, vol.364
, pp. 53-59
-
-
Shen, H.B.1
Chou, K.C.2
-
68
-
-
33747880465
-
Ensemble classifier for protein fold Pattern Recogn
-
Shen, H.B., Chou, K.C. Ensemble classifier for protein fold Pattern Recogn., Bioinformatics, 2006, 22, 1717-1722.
-
(2006)
Bioinformatics
, vol.22
, pp. 1717-1722
-
-
Shen, H.B.1
Chou, K.C.2
-
69
-
-
45649083292
-
Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo amino acid composition
-
Zhang, G.Y., Fang, B.S. Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo amino acid composition. J. Theor. Biol., 2008, 253, 310-315.
-
(2008)
J. Theor. Biol
, vol.253
, pp. 310-315
-
-
Zhang, G.Y.1
Fang, B.S.2
-
70
-
-
54249139729
-
Predicting lipase types by improved Chou's pseudo-amino acid composition
-
Zhang, G.Y., Li, H.C., Fang, B.S. Predicting lipase types by improved Chou's pseudo-amino acid composition. Protein. Pept. Lett., 2008, 15, 1132-1137.
-
(2008)
Protein Pept Lett
, vol.15
, pp. 1132-1137
-
-
Zhang, G.Y.1
Li, H.C.2
Fang, B.S.3
-
71
-
-
32344433486
-
Predicting protein-protein interactions from sequences in a hybridization space
-
Chou, K.C., Cai, Y.D. Predicting protein-protein interactions from sequences in a hybridization space. J. Proteome Res., 2006, 5, 316-322.
-
(2006)
J. Proteome Res
, vol.5
, pp. 316-322
-
-
Chou, K.C.1
Cai, Y.D.2
-
72
-
-
38149007012
-
Predicting DNA-binding proteins: Approached from Chou's pseudo amino acid composition and other specific sequence features
-
Fang, Y., Guo, Y., Feng, Y., Li, M. Predicting DNA-binding proteins: approached from Chou's pseudo amino acid composition and other specific sequence features. Amino Acids, 2008, 34, 103-109.
-
(2008)
Amino Acids
, vol.34
, pp. 103-109
-
-
Fang, Y.1
Guo, Y.2
Feng, Y.3
Li, M.4
-
73
-
-
34247544233
-
Signal-CF: A subsite-coupled and windowfusing approach for predicting signal peptides
-
Chou, K.C., Shen, H.B. Signal-CF: a subsite-coupled and windowfusing approach for predicting signal peptides. Biochem. Biophys. Res. Comm., 2007, 357, 633-640.
-
(2007)
Biochem. Biophys. Res. Comm
, vol.357
, pp. 633-640
-
-
Chou, K.C.1
Shen, H.B.2
-
74
-
-
34748902270
-
Signal-3L: A 3-layer approach for predicting signal peptide
-
Shen, H.B., Chou, K.C. Signal-3L: a 3-layer approach for predicting signal peptide. Biochem. Biophys. Res. Comm., 2007, 363, 297-303.
-
(2007)
Biochem. Biophys. Res. Comm
, vol.363
, pp. 297-303
-
-
Shen, H.B.1
Chou, K.C.2
-
75
-
-
34447254270
-
Medicinal chemistry and bioinformatics current trends in drugs discovery with networks topological indices
-
Gonzalez-Diaz, H., Vilar, S., Santana, L., Uriarte, E. Medicinal chemistry and bioinformatics current trends in drugs discovery with networks topological indices. Curr. Top. Med. Chem., 2007, 10, 1015-1029.
-
(2007)
Curr. Top. Med. Chem
, vol.10
, pp. 1015-1029
-
-
Gonzalez-Diaz, H.1
Vilar, S.2
Santana, L.3
Uriarte, E.4
-
76
-
-
40549136471
-
Proteomics, networks, and connectivity indices
-
Gonzalez-Diaz, H., Gonzalez-Diaz, Y., Santana, L., Ubeira, F.M., Uriarte, E. Proteomics, networks, and connectivity indices. Proteomics, 2008, 8, 750-778.
-
(2008)
Proteomics
, vol.8
, pp. 750-778
-
-
Gonzalez-Diaz, H.1
Gonzalez-Diaz, Y.2
Santana, L.3
Ubeira, F.M.4
Uriarte, E.5
-
77
-
-
33748796057
-
Prediction of protein subcellular location using hydrophobic patterns of amino acid sequence
-
Zhang, T.L., Ding, Y.S., Chou, K.C. Prediction of protein subcellular location using hydrophobic patterns of amino acid sequence. Comput. Biol. Chem., 2006, 30, 367-371.
-
(2006)
Comput. Biol. Chem
, vol.30
, pp. 367-371
-
-
Zhang, T.L.1
Ding, Y.S.2
Chou, K.C.3
-
78
-
-
33748415440
-
Prediction of structural classes for protein sequences and domains-Impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy
-
Kurgan, L.A., Homaeian, L. Prediction of structural classes for protein sequences and domains-Impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy. Pattern Recogn., 2006, 39, 2323-2343.
-
(2006)
Pattern Recogn
, vol.39
, pp. 2323-2343
-
-
Kurgan, L.A.1
Homaeian, L.2
-
79
-
-
34548606295
-
Review: Recent progresses in protein subcellular location prediction
-
Chou, K.C., Shen, H.B. Review: Recent progresses in protein subcellular location prediction. Anal. Biochem., 2007, 370, 1-16.
-
(2007)
Anal. Biochem
, vol.370
, pp. 1-16
-
-
Chou, K.C.1
Shen, H.B.2
-
80
-
-
0028239038
-
Discrimination of intracellular and extracellular proteins using amino acid composition and residuepair frequencies
-
Nakashima, H., Nishikawa, K. Discrimination of intracellular and extracellular proteins using amino acid composition and residuepair frequencies. J. Mol. Biol., 1994, 238, 54-61.
-
(1994)
J. Mol. Biol
, vol.238
, pp. 54-61
-
-
Nakashima, H.1
Nishikawa, K.2
-
81
-
-
33749559689
-
Protein subcellular location prediction based on pseudo amino acid composition and immune genetic algorithm
-
Zhang, T.L., Ding, Y.S., Shao, S.H. Protein subcellular location prediction based on pseudo amino acid composition and immune genetic algorithm. Lect. Notes. Comput. Sc., 2006, 4115, 534-542.
-
(2006)
Lect. Notes. Comput. Sc
, vol.4115
, pp. 534-542
-
-
Zhang, T.L.1
Ding, Y.S.2
Shao, S.H.3
-
82
-
-
0026015905
-
Approximate entropy as a measure of system complexity
-
Pincus, S.M. Approximate entropy as a measure of system complexity. Proc. Natl. Acad. Sci. USA, 1991, 88, 2297-2301.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 2297-2301
-
-
Pincus, S.M.1
-
83
-
-
0016162558
-
Algorithms for the prediction of a-helical and 0-structural regions in globular proteins
-
Lim, V.I. Algorithms for the prediction of a-helical and 0-structural regions in globular proteins. J. Mol. Biol., 1974, 88, 873-894.
-
(1974)
J. Mol. Biol
, vol.88
, pp. 873-894
-
-
Lim, V.I.1
-
84
-
-
0022412192
-
Hydrophobic of amino acid residue in globular proteins
-
Rose, G.D., Geselowitz, A.R., Lesser, G.J., Lee, R.H., Zehfus, M.H. Hydrophobic of amino acid residue in globular proteins. Science, 1985, 229, 834-838.
-
(1985)
Science
, vol.229
, pp. 834-838
-
-
Rose, G.D.1
Geselowitz, A.R.2
Lesser, G.J.3
Lee, R.H.4
Zehfus, M.H.5
-
85
-
-
0034875843
-
On combining classifiers using sum and product rules
-
Alexandre, L.A., Campilho, A.C., Kamel, M. On combining classifiers using sum and product rules. Pattern Recogn. Lett., 2001, 22, 1283-1289.
-
(2001)
Pattern Recogn. Lett
, vol.22
, pp. 1283-1289
-
-
Alexandre, L.A.1
Campilho, A.C.2
Kamel, M.3
-
86
-
-
0345548657
-
Random Forest: A Classification and Regression Tool for Compound Classification and QSAR Modeling
-
Svetnik, V., Liaw, A., Tong, C., Culberson, J.C., Sheridan, R.P., Feuston, B.P. Random Forest: A Classification and Regression Tool for Compound Classification and QSAR Modeling. J. Chem. Inf. Comput. Sci., 2003, 43, 169-198.
-
(2003)
J. Chem. Inf. Comput. Sci
, vol.43
, pp. 169-198
-
-
Svetnik, V.1
Liaw, A.2
Tong, C.3
Culberson, J.C.4
Sheridan, R.P.5
Feuston, B.P.6
-
87
-
-
28444439947
-
Using LogitBoost classifier to predict protein structural classes
-
Cai, Y.D., Feng, K.Y., Lu, W.C. Chou K.C. Using LogitBoost classifier to predict protein structural classes. J. Theor. Biol., 2006, 238, 172-176.
-
(2006)
J. Theor. Biol
, vol.238
, pp. 172-176
-
-
Cai, Y.D.1
Feng, K.Y.2
Lu, W.C.3
Chou, K.C.4
-
88
-
-
22144470177
-
Boosting classifier for predicting protein domain structural class
-
Feng, K.Y., Cai, Y.D., Chou, K.C. Boosting classifier for predicting protein domain structural class. Biochem. Biophys. Res. Commun., 2005, 334, 213-217.
-
(2005)
Biochem. Biophys. Res. Commun
, vol.334
, pp. 213-217
-
-
Feng, K.Y.1
Cai, Y.D.2
Chou, K.C.3
-
89
-
-
33646393287
-
Predicting protein structural class with AdaBoost learner
-
Niu, B., Cai, Y.D., Lu, W.C., Zheng, G.Y., Chou, K.C. Predicting protein structural class with AdaBoost learner. Protein Pept. Lett., 2006, 13, 489-492.
-
(2006)
Protein Pept. Lett
, vol.13
, pp. 489-492
-
-
Niu, B.1
Cai, Y.D.2
Lu, W.C.3
Zheng, G.Y.4
Chou, K.C.5
-
90
-
-
0031211090
-
A decision-theoretic generalization of online learning and an application to boosting
-
Freund, Y., Schapire, R. A decision-theoretic generalization of online learning and an application to boosting. J. Comput. Syst. Sci., 1997, 55, 119-139.
-
(1997)
J. Comput. Syst. Sci
, vol.55
, pp. 119-139
-
-
Freund, Y.1
Schapire, R.2
-
91
-
-
0022219988
-
A fuzzy k-nearest neighbors algorithm
-
Keller, J.M., Gray, M.R. Givens JA.A fuzzy k-nearest neighbors algorithm. IEEE Trans. Syst. Man Cybern., 1985, 15, 580-585.
-
(1985)
IEEE Trans. Syst. Man Cybern
, vol.15
, pp. 580-585
-
-
Keller, J.M.1
Gray, M.R.2
Givens, J.A.3
-
92
-
-
77951665965
-
Prediction of subcellular location apoptosis proteins with ensemble classifier and feature selection
-
DOI=10.1007/s00726-0080209-4
-
Gu, Q., Ding, Y.S., Jiang, X.Y., Zhang, T.L. Prediction of subcellular location apoptosis proteins with ensemble classifier and feature selection. Amino Acids, 2008, DOI=10.1007/s00726-0080209-4.
-
(2008)
Amino Acids
-
-
Gu, Q.1
Ding, Y.S.2
Jiang, X.Y.3
Zhang, T.L.4
-
93
-
-
34547673383
-
Cost-sensitive boosting for classification of imbalanced data
-
Sun, Y.M., Kamel, M.S., Wong, A.C., Wang, Y. Cost-sensitive boosting for classification of imbalanced data. Pattern Recogn., 2007, 40, 3358-3378.
-
(2007)
Pattern Recogn
, vol.40
, pp. 3358-3378
-
-
Sun, Y.M.1
Kamel, M.S.2
Wong, A.C.3
Wang, Y.4
-
94
-
-
34548301416
-
Prediction of linear B-cell epitopes using amino acid pair antigenicity scale
-
Chen, J., Liu, H., Yang, J., Chou, K.C. Prediction of linear B-cell epitopes using amino acid pair antigenicity scale. Amino Acids, 2007, 33, 423-428.
-
(2007)
Amino Acids
, vol.33
, pp. 423-428
-
-
Chen, J.1
Liu, H.2
Yang, J.3
Chou, K.C.4
-
95
-
-
41449117926
-
Predicting subcellular localization with AdaBoost learner
-
Jin, Y., Niu, B., Feng, K.Y., Lu, W.C., Cai, Y.D., Li, G.Z. Predicting subcellular localization with AdaBoost learner. Protein Pept. Lett., 2008, 15, 286-289.
-
(2008)
Protein Pept. Lett
, vol.15
, pp. 286-289
-
-
Jin, Y.1
Niu, B.2
Feng, K.Y.3
Lu, W.C.4
Cai, Y.D.5
Li, G.Z.6
-
96
-
-
34249051980
-
Predicting secretory protein signal sequence cleavage sites by fusing the marks of global alignments
-
Liu, D.Q., Liu, H., Shen, H.B., Yang, J., Chou, K.C. Predicting secretory protein signal sequence cleavage sites by fusing the marks of global alignments. Amino Acids, 2007, 32, 493-496.
-
(2007)
Amino Acids
, vol.32
, pp. 493-496
-
-
Liu, D.Q.1
Liu, H.2
Shen, H.B.3
Yang, J.4
Chou, K.C.5
-
97
-
-
32944461574
-
Using cellular automata images and pseudo amino acid composition to predict protein subcellular location
-
Xiao, X., Shao, S.H., Ding, Y.S., Huang, Z.D., Chou, K.C. Using cellular automata images and pseudo amino acid composition to predict protein subcellular location. Amino Acids, 2006, 30, 49-54.
-
(2006)
Amino Acids
, vol.30
, pp. 49-54
-
-
Xiao, X.1
Shao, S.H.2
Ding, Y.S.3
Huang, Z.D.4
Chou, K.C.5
-
98
-
-
36448935288
-
Using pseudo amino acid composition and binary-tree support vector machines to predict protein structural classes
-
Zhang, T.L., Ding, Y.S. Using pseudo amino acid composition and binary-tree support vector machines to predict protein structural classes. Amino Acids, 2007, 33, 623-629.
-
(2007)
Amino Acids
, vol.33
, pp. 623-629
-
-
Zhang, T.L.1
Ding, Y.S.2
-
99
-
-
33845536164
-
The class imbalance problem: A systematic study
-
Japkowicz, N., Stephen, S. The class imbalance problem: A systematic study. Intell. Data Anal., 2002, 6, 429-450
-
(2002)
Intell. Data Anal
, vol.6
, pp. 429-450
-
-
Japkowicz, N.1
Stephen, S.2
-
100
-
-
0037340256
-
The method to compare nucleotide sequence based on minimum entropy principle
-
Sadovsky, M.G. The method to compare nucleotide sequence based on minimum entropy principle. Bull. Math. Biol., 2003, 65, 309-322.
-
(2003)
Bull. Math. Biol
, vol.65
, pp. 309-322
-
-
Sadovsky, M.G.1
-
101
-
-
38549155006
-
AAindex: Amino acid index database, progress report 2008
-
Kawashima, S., Pokarowski, P., Pokarowska, M., Kolinski, A., Katayama, T., Kanehisa, M. AAindex: amino acid index database, progress report 2008. Nucleic. Acids Res., 2008, 36, 202-205
-
(2008)
Nucleic. Acids Res
, vol.36
, pp. 202-205
-
-
Kawashima, S.1
Pokarowski, P.2
Pokarowska, M.3
Kolinski, A.4
Katayama, T.5
Kanehisa, M.6
|