Prediction of G-protein-coupled receptor classes

Journal of Proteome Research

Volumn 4, Issue 4, 2005, Pages 1413-1418

  Chou, Kuo Chen ^a  

^a GORDON LIFE SCIENCE INSTITUTE   (United States)

Author keywords

Amino acid composition; CD predictor; Evolutionary pharmacology; Glutamate; GPCR; Metabotrophic; Pheromone; Rhodopsin like; Secretin like

Indexed keywords

CELL SURFACE RECEPTOR; G PROTEIN COUPLED RECEPTOR; G PROTEIN COUPLED RECEPTOR BINDING PROTEIN; GLUTAMIC ACID; PHEROMONE; RHODOPSIN; SECRETIN; UNCLASSIFIED DRUG;

AMINO ACID ANALYSIS; ARTICLE; DRUG DESIGN; DRUG TARGETING; LIGAND BINDING; NUCLEOTIDE SEQUENCE; PREDICTION; PRIORITY JOURNAL; PROCESS MODEL; PROTEIN ANALYSIS; PROTEIN FUNCTION; SEQUENCE ALIGNMENT; SIGNAL TRANSDUCTION; TIME; UNINDEXED SEQUENCE;

AMINO ACIDS; DATABASES, PROTEIN; DRUG DESIGN; HUMANS; MATHEMATICS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; RECEPTORS, G-PROTEIN-COUPLED; SECOND MESSENGER SYSTEMS;

EID: 23944438427     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr050087t     Document Type: Article

References (20)

1. Roth, B. L.; Willins, D. L.; Kroeze, W. K. G protein-coupled receptor (GPCR) trafficking in the central nervous system: relevance for drugs of abuse. Drug Alcohol Depend. 1998, 51, 73-85.
2. Chou, K. C.; Elrod, D. W. Bioinformatical analysis of G-protein-coupled receptors. J. Proteome Res. 2002, 1, 429-433.
3. Horn, F.; Weare, J.; Beukers, M. W.; Horsch, S.; Bairoch, A.; Chen, W.; Edvardsen, O.; Campagne, F.; Vriend, G. GPCRDB: an information system for G protein-coupled receptors. Nucleic Acids Res. 1998, 26, 275-279.
4. Horn, F.; Vriend, G.; Cohen, F. E. Collecting and harvesting biological data: the GPCRDB and NucleaRDB information systems. Nucleic Acids Res. 2001, 29, 346-349.
5. Bairoch, A.; Apweiler, R. The SWISS-PROT protein sequence data bank and its supplement TrEMBL. Nucleic Acids Res. 2000, 25, 31-36.
6. Gish, W. http://blast.wustl.edu/pub/nrdb/1999.
7. Thompson, J. D.; Higgins, D. G.; Gibson, T. J. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice Nucleic Acids Res. 1994, 22, 4673-4680.
8. Chou, J. J.; Zhang, C. T. A joint prediction of the folding types of 1490 human proteins from their genetic codons J. Theor. Biol 1993, 161, 251-262.
9. Chou, K. C.; Zhang, C. T. Predicting protein folding types by distance functions that make allowances for amino acid interactions. J. Biol. Chem, 1994, 269, 22014-22020.
10. Chou, K. C. A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space. Proteins: Struct. Funct. Genet. 1995, 21, 319-344.
11. Liu, W.; Chou, K. C. Prediction of protein structural classes by modified Mahalanobis discriminant algorithm. J. Protein Chem. 1998, 17, 209-217.
12. Chou, K. C.; Liu, W.; Maggiora, G. M.; Zhang, C. T. Prediction and classification of domain structural classes. Proteins: Struct. Funct. Genet. 1998, 31, 97-103.
13. Chou, K. C.; Elrod, D. W. Protein subcellular location prediction. Protein Eng. 1999, 12, 107-118.
14. Zhou, G. P. An intriguing controversy over protein structural class prediction. J. Protein Chem. 1998, 17, 729-738.
15. Mahalanobis, P. C. On the generalized distance in statistics. Proc. Natl. Inst. Sci. India 1936, 2, 49-55.
16. Pillai, K. C. S. In Encyclopedia of Statistical Sciences; Kotz, S., Johnson, N. L., Eds.; John Wiley & Sons: New York, 1985; Vol. 5, pp 176-181.
17. Zhou, G. P.; Assa-Munt, N. Some insights into protein structural class prediction. Proteins: Struct. Funct. Genet. 2001, 44, 57-59.
18. Chou, K. C; Zhang, C. T. Review: Prediction of protein structural classes. Crit. Rev. Biochem. Mol. Biol. 1995, 30, 275-349.
19. Mardia, K. V.; Kent, J. T.; Bibby, J. M. Multivariate Analysis; Academic Press: London, 1979; Chapter 11 Discriminant Analysis; Chapter 12 Multivariate analysis of variance; Chapter 13 cluster analysis; pp. 322-381.
20. Chou, K. C. A key driving force in determination of protein structural classes. Biochem. Biophys. Res. Commun. 1999, 264, 216-224.