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Volumn 15, Issue 2, 2014, Pages 1746-1766

iRSpot-TNCPseAAC: Identify recombination spots with trinucleotide composition and pseudo amino acid components

Author keywords

Coldspots; DNA; Genome; Hotspots; iRSpot TNCPseAAC; Pseudo amino acid composition; Recombination spots; Trinucleotide composition; Web server

Indexed keywords

TRINUCLEOTIDE; AMINO ACID; CODON;

EID: 84892958175     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms15021746     Document Type: Article
Times cited : (239)

References (123)
  • 1
    • 84855286278 scopus 로고    scopus 로고
    • Analysis of biological features associated with meiotic recombination hot and cold spots in Saccharomyces cerevisiae
    • Hansen, L.; Kim, N.K.; Marino-Ramirez, L.; Landsman, D. Analysis of biological features associated with meiotic recombination hot and cold spots in Saccharomyces cerevisiae. PLoS One 2011, 6, e29711.
    • (2011) PLoS One , vol.6
    • Hansen, L.1    Kim, N.K.2    Marino-Ramirez, L.3    Landsman, D.4
  • 2
    • 36448991603 scopus 로고    scopus 로고
    • Spo11 and the formation of DNA double-strand breaks in meiosis
    • Keeney, S. Spo11 and the formation of DNA double-strand breaks in meiosis. Genome Dyn. Stab. 2008, 2, 81-123.
    • (2008) Genome Dyn. Stab. , vol.2 , pp. 81-123
    • Keeney, S.1
  • 3
    • 35748973239 scopus 로고    scopus 로고
    • Abnormal meiotic recombination in infertile men and its association with sperm aneuploidy
    • Ferguson, K.A.; Wong, E.C.; Chow, V.; Nigro, M.; Ma, S. Abnormal meiotic recombination in infertile men and its association with sperm aneuploidy. Hum. Mol. Genet. 2007, 16, 2870-2879.
    • (2007) Hum. Mol. Genet. , vol.16 , pp. 2870-2879
    • Ferguson, K.A.1    Wong, E.C.2    Chow, V.3    Nigro, M.4    Ma, S.5
  • 4
    • 51449097713 scopus 로고    scopus 로고
    • Analysis of the meiotic recombination gene REC8 for sequence variations in a population with severe male factor infertility
    • Griffin, J.; Emery, B.R.; Christensen, G.L.; Carrell, D.T. Analysis of the meiotic recombination gene REC8 for sequence variations in a population with severe male factor infertility. Syst. Biol. Reprod. Med. 2008, 54, 163-165.
    • (2008) Syst. Biol. Reprod. Med. , vol.54 , pp. 163-165
    • Griffin, J.1    Emery, B.R.2    Christensen, G.L.3    Carrell, D.T.4
  • 5
    • 79952435686 scopus 로고    scopus 로고
    • Meiotic recombination and male infertility: From basic science to clinical reality?
    • Hann, M.C.; Lau, P.E.; Tempest, H.G. Meiotic recombination and male infertility: From basic science to clinical reality? Asian J. Androl. 2011, 13, 212-218.
    • (2011) Asian J. Androl. , vol.13 , pp. 212-218
    • Hann, M.C.1    Lau, P.E.2    Tempest, H.G.3
  • 6
    • 0031010660 scopus 로고    scopus 로고
    • Clustering of meiotic double-strand breaks on yeast chromosome III
    • Baudat, F.; Nicolas, A. Clustering of meiotic double-strand breaks on yeast chromosome III. Proc. Natl. Acad. Sci. USA 1997, 94, 5213-5218.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 5213-5218
    • Baudat, F.1    Nicolas, A.2
  • 7
    • 0030460182 scopus 로고    scopus 로고
    • Patterns of meiotic double-strand breakage on native and artificial yeast chromosomes
    • Klein, S.; Zenvirth, D.; Dror, V.; Barton, A.B.; Kaback, D.B.; Simchen, G. Patterns of meiotic double-strand breakage on native and artificial yeast chromosomes. Chromosoma 1996, 105, 276-284.
    • (1996) Chromosoma , vol.105 , pp. 276-284
    • Klein, S.1    Zenvirth, D.2    Dror, V.3    Barton, A.B.4    Kaback, D.B.5    Simchen, G.6
  • 8
    • 0026658219 scopus 로고
    • Multiple sites for double-strand breaks in whole meiotic chromosomes of Saccharomyces cerevisiae
    • Zenvirth, D.; Arbel, T.; Sherman, A.; Goldway, M.; Klein, S.; Simchen, G. Multiple sites for double-strand breaks in whole meiotic chromosomes of Saccharomyces cerevisiae. EMBO J. 1992, 11, 3441-3447.
    • (1992) EMBO J. , vol.11 , pp. 3441-3447
    • Zenvirth, D.1    Arbel, T.2    Sherman, A.3    Goldway, M.4    Klein, S.5    Simchen, G.6
  • 9
    • 0035345013 scopus 로고    scopus 로고
    • Meiotic recombination hot spots and cold spots
    • Petes, T.D. Meiotic recombination hot spots and cold spots. Nat. Rev. Genet. 2001, 2, 360-369.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 360-369
    • Petes, T.D.1
  • 10
    • 84878546627 scopus 로고    scopus 로고
    • Meiotic and mitotic recombination in meiosis
    • Kohl, K.P.; Sekelsky, J. Meiotic and mitotic recombination in meiosis. Genetics 2013, 194, 327-334.
    • (2013) Genetics , vol.194 , pp. 327-334
    • Kohl, K.P.1    Sekelsky, J.2
  • 11
    • 0029587470 scopus 로고
    • Meiotic recombination hotspots
    • Lichten, M.; Goldman, A.S. Meiotic recombination hotspots. Ann. Rev. Genet. 1995, 29, 423-444.
    • (1995) Ann. Rev. Genet. , vol.29 , pp. 423-444
    • Lichten, M.1    Goldman, A.S.2
  • 13
    • 0031961717 scopus 로고    scopus 로고
    • Meiotic recombination hotspots: Shaping the genome and insights into hypervariable minisatellite DNA change
    • Wahls, W.P. Meiotic recombination hotspots: Shaping the genome and insights into hypervariable minisatellite DNA change. Curr. Top. Dev. Biol. 1998, 37, 37-75.
    • (1998) Curr. Top. Dev. Biol. , vol.37 , pp. 37-75
    • Wahls, W.P.1
  • 14
    • 80054694427 scopus 로고    scopus 로고
    • Sequence-dependent prediction of recombination hotspots in Saccharomyces cerevisiae
    • Liu, G.; Liu, J.; Cui, X.; Cai, L. Sequence-dependent prediction of recombination hotspots in Saccharomyces cerevisiae. J. Theor. Biol. 2012, 293, 49-54.
    • (2012) J. Theor. Biol. , vol.293 , pp. 49-54
    • Liu, G.1    Liu, J.2    Cui, X.3    Cai, L.4
  • 15
    • 84868128310 scopus 로고    scopus 로고
    • iNuc-PhysChem: A sequence-based predictor for identifying nucleosomes via physicochemical properties
    • Chen, W.; Lin, H.; Feng, P.M.; Ding, C.; Zuo, Y.C.; Chou, K.C. iNuc-PhysChem: A sequence-based predictor for identifying nucleosomes via physicochemical properties. PLoS One 2012, 7, e47843.
    • (2012) PLoS One , vol.7
    • Chen, W.1    Lin, H.2    Feng, P.M.3    Ding, C.4    Zuo, Y.C.5    Chou, K.C.6
  • 16
    • 23944438427 scopus 로고    scopus 로고
    • Prediction of G-protein-coupled receptor classes
    • Chou, K.C. Prediction of G-protein-coupled receptor classes. J. Proteome Res. 2005, 4, 1413-1418.
    • (2005) J. Proteome Res. , vol.4 , pp. 1413-1418
    • Chou, K.C.1
  • 17
    • 0037783143 scopus 로고    scopus 로고
    • Prediction of enzyme family classes
    • Chou, K.C.; Elrod, D.W. Prediction of enzyme family classes. J. Proteome Res. 2003, 2, 183-190.
    • (2003) J. Proteome Res. , vol.2 , pp. 183-190
    • Chou, K.C.1    Elrod, D.W.2
  • 18
    • 6344231856 scopus 로고    scopus 로고
    • SLLE for predicting membrane protein types
    • Wang, M.; Yang, J.; Xu, Z.J.; Chou, K.C. SLLE for predicting membrane protein types. J. Theor. Biol. 2005, 232, 7-15.
    • (2005) J. Theor. Biol. , vol.232 , pp. 7-15
    • Wang, M.1    Yang, J.2    Xu, Z.J.3    Chou, K.C.4
  • 19
    • 51349105695 scopus 로고    scopus 로고
    • Predicting protein structural classes with pseudo amino acid composition: An approach using geometric moments of cellular automaton image
    • Xiao, X.; Wang, P.; Chou, K.C. Predicting protein structural classes with pseudo amino acid composition: An approach using geometric moments of cellular automaton image. J. Theor. Biol. 2008, 254, 691-696.
    • (2008) J. Theor. Biol. , vol.254 , pp. 691-696
    • Xiao, X.1    Wang, P.2    Chou, K.C.3
  • 20
    • 0029051959 scopus 로고
    • A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space
    • Chou, K.C. A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space. Proteins: Struct. Funct. Genet 1995, 21, 319-344.
    • (1995) Proteins: Struct. Funct. Genet , vol.21 , pp. 319-344
    • Chou, K.C.1
  • 21
    • 22144470177 scopus 로고    scopus 로고
    • Boosting classifier for predicting protein domain structural class
    • Feng, K.Y.; Cai, Y.D.; Chou, K.C. Boosting classifier for predicting protein domain structural class. Biochem. Biophys. Res. Commun. 2005, 334, 213-217.
    • (2005) Biochem. Biophys. Res. Commun. , vol.334 , pp. 213-217
    • Feng, K.Y.1    Cai, Y.D.2    Chou, K.C.3
  • 22
    • 0033559165 scopus 로고    scopus 로고
    • Artificial neural network for predicting alpha-turn types
    • Cai, Y.D.; Chou, K.C. Artificial neural network for predicting alpha-turn types. Anal. Biochem. 1999, 268, 407-409.
    • (1999) Anal. Biochem. , vol.268 , pp. 407-409
    • Cai, Y.D.1    Chou, K.C.2
  • 23
    • 0029595415 scopus 로고
    • Neural network prediction of the HIV-1 protease cleavage sites
    • Thompson, T.B.; Chou, K.C.; Zheng, C. Neural network prediction of the HIV-1 protease cleavage sites. J. Theor. Biol. 1995, 177, 369-379.
    • (1995) J. Theor. Biol. , vol.177 , pp. 369-379
    • Thompson, T.B.1    Chou, K.C.2    Zheng, C.3
  • 24
    • 84885640993 scopus 로고    scopus 로고
    • iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition
    • Feng, P.M.; Chen, W.; Lin, H.; Chou, K.C. iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition. Anal. Biochem. 2013, 442, 118-125.
    • (2013) Anal. Biochem. , vol.442 , pp. 118-125
    • Feng, P.M.1    Chen, W.2    Lin, H.3    Chou, K.C.4
  • 25
    • 84876053736 scopus 로고    scopus 로고
    • iRSpot-PseDNC: Identify recombination spots with pseudo dinucleotide composition
    • Chen, W.; Feng, P.M.; Lin, H.; Chou, K.C. iRSpot-PseDNC: Identify recombination spots with pseudo dinucleotide composition. Nucleic Acids Res. 2013, 41, e69.
    • (2013) Nucleic Acids Res. , vol.41
    • Chen, W.1    Feng, P.M.2    Lin, H.3    Chou, K.C.4
  • 26
    • 84857411675 scopus 로고    scopus 로고
    • iNR-PhysChem: A sequence-based predictor for identifying nuclear receptors and their subfamilies via physical-chemical property matrix
    • Xiao, X.; Wang, P.; Chou, K.C. iNR-PhysChem: A sequence-based predictor for identifying nuclear receptors and their subfamilies via physical-chemical property matrix. PLoS One 2012, 7, e30869.
    • (2012) PLoS One , vol.7
    • Xiao, X.1    Wang, P.2    Chou, K.C.3
  • 27
    • 80052855771 scopus 로고    scopus 로고
    • iDNA-Prot: Identification of DNA binding proteins using random forest with grey model
    • Lin, W.Z.; Fang, J.A.; Xiao, X.; Chou, K.C. iDNA-Prot: Identification of DNA binding proteins using random forest with grey model. PLoS One 2011, 6, e24756.
    • (2011) PLoS One , vol.6
    • Lin, W.Z.1    Fang, J.A.2    Xiao, X.3    Chou, K.C.4
  • 29
    • 84873575437 scopus 로고    scopus 로고
    • iSNO-PseAAC: Predict cysteine S-nitrosylation sites in proteins by incorporating position specific amino acid propensity into pseudo amino acid composition
    • Xu, Y.; Ding, J.; Wu, L.Y.; Chou, K.C. iSNO-PseAAC: Predict cysteine S-nitrosylation sites in proteins by incorporating position specific amino acid propensity into pseudo amino acid composition. PLoS One 2013, 8, e55844.
    • (2013) PLoS One , vol.8
    • Xu, Y.1    Ding, J.2    Wu, L.Y.3    Chou, K.C.4
  • 30
    • 2442671554 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins in a hybridization space
    • Cai, Y.D.; Chou, K.C. Predicting subcellular localization of proteins in a hybridization space. Bioinformatics 2004, 20, 1151-1156.
    • (2004) Bioinformatics , vol.20 , pp. 1151-1156
    • Cai, Y.D.1    Chou, K.C.2
  • 31
    • 28844434867 scopus 로고    scopus 로고
    • Prediction of protease types in a hybridization space
    • Chou, K.C.; Cai, Y.D. Prediction of protease types in a hybridization space. Biochem. Biophys. Res. Commun. 2006, 339, 1015-1020.
    • (2006) Biochem. Biophys. Res. Commun. , vol.339 , pp. 1015-1020
    • Chou, K.C.1    Cai, Y.D.2
  • 32
    • 33747197197 scopus 로고    scopus 로고
    • Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-nearest neighbor classifiers
    • Chou, K.C.; Shen, H.B. Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-nearest neighbor classifiers. J. Proteome Res. 2006, 5, 1888-1897.
    • (2006) J. Proteome Res. , vol.5 , pp. 1888-1897
    • Chou, K.C.1    Shen, H.B.2
  • 33
    • 33745759451 scopus 로고    scopus 로고
    • Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization
    • Chou, K.C.; Shen, H.B. Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization. Biochem. Biophys. Res. Commun. 2006, 347, 150-157.
    • (2006) Biochem. Biophys. Res. Commun. , vol.347 , pp. 150-157
    • Chou, K.C.1    Shen, H.B.2
  • 34
    • 33845423991 scopus 로고    scopus 로고
    • Large-scale predictions of Gram-negative bacterial protein subcellular locations
    • Chou, K.C.; Shen, H.B. Large-scale predictions of Gram-negative bacterial protein subcellular locations. J. Proteome Res. 2006, 5, 3420-3428.
    • (2006) J. Proteome Res. , vol.5 , pp. 3420-3428
    • Chou, K.C.1    Shen, H.B.2
  • 35
    • 34249318001 scopus 로고    scopus 로고
    • Euk-mPLoc: A fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites
    • Chou, K.C.; Shen, H.B. Euk-mPLoc: A fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites. J. Proteome Res. 2007, 6, 1728-1734.
    • (2007) J. Proteome Res. , vol.6 , pp. 1728-1734
    • Chou, K.C.1    Shen, H.B.2
  • 36
    • 34247544233 scopus 로고    scopus 로고
    • Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides
    • Chou, K.C.; Shen, H.B. Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides. Biochem. Biophys. Res. Commun. 2007, 357, 633-640.
    • (2007) Biochem. Biophys. Res. Commun. , vol.357 , pp. 633-640
    • Chou, K.C.1    Shen, H.B.2
  • 37
    • 22144487766 scopus 로고    scopus 로고
    • Using optimized evidence-theoretic K-nearest neighbor classifier and pseudo amino acid composition to predict membrane protein types
    • Shen, H.B.; Chou, K.C. Using optimized evidence-theoretic K-nearest neighbor classifier and pseudo amino acid composition to predict membrane protein types. Biochem. Biophys. Res. Commun. 2005, 334, 288-292.
    • (2005) Biochem. Biophys. Res. Commun. , vol.334 , pp. 288-292
    • Shen, H.B.1    Chou, K.C.2
  • 38
    • 69949101944 scopus 로고    scopus 로고
    • A top-down approach to enhance the power of predicting human protein subcellular localization: Hum-mPLoc 2.0
    • Shen, H.B.; Chou, K.C. A top-down approach to enhance the power of predicting human protein subcellular localization: Hum-mPLoc 2.0. Anal. Biochem. 2009, 394, 269-274.
    • (2009) Anal. Biochem. , vol.394 , pp. 269-274
    • Shen, H.B.1    Chou, K.C.2
  • 39
    • 79951606205 scopus 로고    scopus 로고
    • GPCR-2L: Predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions
    • Xiao, X.; Wang, P.; Chou, K.C. GPCR-2L: Predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions. Mol. Biosyst. 2011, 7, 911-919.
    • (2011) Mol. Biosyst. , vol.7 , pp. 911-919
    • Xiao, X.1    Wang, P.2    Chou, K.C.3
  • 40
    • 33748150984 scopus 로고    scopus 로고
    • Fuzzy KNN for predicting membrane protein types from pseudo amino acid composition
    • Shen, H.B.; Yang, J.; Chou, K.C. Fuzzy KNN for predicting membrane protein types from pseudo amino acid composition. J. Theor. Biol. 2006, 240, 9-13.
    • (2006) J. Theor. Biol. , vol.240 , pp. 9-13
    • Shen, H.B.1    Yang, J.2    Chou, K.C.3
  • 41
    • 84883143619 scopus 로고    scopus 로고
    • iGPCR-Drug: A web server for predicting interaction between GPCRs and drugs in cellular networking
    • Xiao, X.; Min, J.L.; Wang, P.; Chou, K.C. iGPCR-Drug: A web server for predicting interaction between GPCRs and drugs in cellular networking. PLoS One 2013, 8, e72234.
    • (2013) PLoS One , vol.8
    • Xiao, X.1    Min, J.L.2    Wang, P.3    Chou, K.C.4
  • 42
    • 84883661549 scopus 로고    scopus 로고
    • iCDI-PseFpt: Identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints
    • Xiao, X.; Min, J.L.; Wang, P.; Chou, K.C. iCDI-PseFpt: Identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints. J. Theor. Biol. 2013, 337C, 71-79.
    • (2013) J. Theor. Biol. , vol.337 C , pp. 71-79
    • Xiao, X.1    Min, J.L.2    Wang, P.3    Chou, K.C.4
  • 43
    • 84875074764 scopus 로고    scopus 로고
    • iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types
    • Xiao, X.; Wang, P.; Lin, W.Z.; Jia, J.H.; Chou, K.C. iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types. Anal. Biochem. 2013, 436, 168-177.
    • (2013) Anal. Biochem. , vol.436 , pp. 168-177
    • Xiao, X.1    Wang, P.2    Lin, W.Z.3    Jia, J.H.4    Chou, K.C.5
  • 44
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudo amino acid composition
    • Chou, K.C. Prediction of protein cellular attributes using pseudo amino acid composition. Proteins: Struct. Funct. Genet. 2001, 43, 246-255.
    • (2001) Proteins: Struct. Funct. Genet. , vol.43 , pp. 246-255
    • Chou, K.C.1
  • 45
    • 12744279642 scopus 로고    scopus 로고
    • Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
    • Chou, K.C. Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes. Bioinformatics 2005, 21, 10-19.
    • (2005) Bioinformatics , vol.21 , pp. 10-19
    • Chou, K.C.1
  • 46
    • 84883658706 scopus 로고    scopus 로고
    • Theoretical and experimental biology in one-A symposium in honour of Professor Kuo-Chen Chou's 50th anniversary and Professor Richard Giegé's 40th anniversary of their scientific careers
    • Lin, S.X.; Lapointe, J. Theoretical and experimental biology in one-A symposium in honour of Professor Kuo-Chen Chou's 50th anniversary and Professor Richard Giegé's 40th anniversary of their scientific careers. J. Biomed. Sci. Eng. 2013, 6, 435-442.
    • (2013) J. Biomed. Sci. Eng. , vol.6 , pp. 435-442
    • Lin, S.X.1    Lapointe, J.2
  • 47
    • 84856475734 scopus 로고    scopus 로고
    • Identifying bacterial virulent proteins by fusing a set of classifiers based on variants of Chou's pseudo amino acid composition and on evolutionary information
    • Nanni, L.; Lumini, A.; Gupta, D.; Garg, A. Identifying bacterial virulent proteins by fusing a set of classifiers based on variants of Chou's pseudo amino acid composition and on evolutionary information. IEEE/ACM Trans. Comput. Biol. Bioinform. 2012, 9, 467-475.
    • (2012) IEEE/ACM Trans. Comput. Biol. Bioinform. , vol.9 , pp. 467-475
    • Nanni, L.1    Lumini, A.2    Gupta, D.3    Garg, A.4
  • 48
    • 84876370111 scopus 로고    scopus 로고
    • Predicting antibacterial peptides by the concept of Chou's pseudo-amino acid composition and machine learning methods
    • Khosravian, M.; Faramarzi, F.K.; Beigi, M.M.; Behbahani, M.; Mohabatkar, H. Predicting antibacterial peptides by the concept of Chou's pseudo-amino acid composition and machine learning methods. Protein Pept. Lett. 2013, 20, 180-186.
    • (2013) Protein Pept. Lett. , vol.20 , pp. 180-186
    • Khosravian, M.1    Faramarzi, F.K.2    Beigi, M.M.3    Behbahani, M.4    Mohabatkar, H.5
  • 49
    • 77955668989 scopus 로고    scopus 로고
    • SecretP: Identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition
    • Yu, L.; Guo, Y.; Li, Y.; Li, G.; Li, M.; Luo, J.; Xiong, W.; Qin, W. SecretP: Identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition. J. Theor. Biol. 2010, 267, 1-6.
    • (2010) J. Theor. Biol. , vol.267 , pp. 1-6
    • Yu, L.1    Guo, Y.2    Li, Y.3    Li, G.4    Li, M.5    Luo, J.6    Xiong, W.7    Qin, W.8
  • 50
    • 78650099168 scopus 로고    scopus 로고
    • Supersecondary structure prediction using Chou's pseudo amino acid composition
    • Zou, D.; He, Z.; He, J.; Xia, Y. Supersecondary structure prediction using Chou's pseudo amino acid composition. J. Comput. Chem. 2011, 32, 271-278.
    • (2011) J. Comput. Chem. , vol.32 , pp. 271-278
    • Zou, D.1    He, Z.2    He, J.3    Xia, Y.4
  • 51
    • 43149104120 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition to predict protein subcellular localization: An approach by incorporating evolutionary information and von Neumann entropies
    • Zhang, S.W.; Zhang, Y.L.; Yang, H.F.; Zhao, C.H.; Pan, Q. Using the concept of Chou's pseudo amino acid composition to predict protein subcellular localization: An approach by incorporating evolutionary information and von Neumann entropies. Amino Acids 2008, 34, 565-572.
    • (2008) Amino Acids , vol.34 , pp. 565-572
    • Zhang, S.W.1    Zhang, Y.L.2    Yang, H.F.3    Zhao, C.H.4    Pan, Q.5
  • 52
    • 78650673337 scopus 로고    scopus 로고
    • Prediction of apoptosis protein locations with genetic algorithms and support vector machines through a new mode of pseudo amino acid composition
    • Kandaswamy, K.K.; Pugalenthi, G.; Moller, S.; Hartmann, E.; Kalies, K.U.; Suganthan, P.N.; Martinetz, T. Prediction of apoptosis protein locations with genetic algorithms and support vector machines through a new mode of pseudo amino acid composition. Protein Pept. Lett. 2010, 17, 1473-1479.
    • (2010) Protein Pept. Lett. , vol.17 , pp. 1473-1479
    • Kandaswamy, K.K.1    Pugalenthi, G.2    Moller, S.3    Hartmann, E.4    Kalies, K.U.5    Suganthan, P.N.6    Martinetz, T.7
  • 53
    • 84863695726 scopus 로고    scopus 로고
    • Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning
    • Mei, S. Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning. J. Theor. Biol. 2012, 310, 80-87.
    • (2012) J. Theor. Biol. , vol.310 , pp. 80-87
    • Mei, S.1
  • 54
    • 84874109868 scopus 로고    scopus 로고
    • EuLoc: A web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou's PseAAC
    • Chang, T.H.; Wu, L.C.; Lee, T.Y.; Chen, S.P.; Huang, H.D.; Horng, J.T. EuLoc: A web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou's PseAAC. J. Comput.-Aided Mol. Des. 2013, 27, 91-103.
    • (2013) J. Comput.-Aided Mol. Des. , vol.27 , pp. 91-103
    • Chang, T.H.1    Wu, L.C.2    Lee, T.Y.3    Chen, S.P.4    Huang, H.D.5    Horng, J.T.6
  • 55
    • 84859635404 scopus 로고    scopus 로고
    • Predict mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition
    • Fan, G.L.; Li, Q.Z. Predict mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition. J. Theor. Biol. 2012, 304, 88-95.
    • (2012) J. Theor. Biol. , vol.304 , pp. 88-95
    • Fan, G.L.1    Li, Q.Z.2
  • 56
    • 84878622856 scopus 로고    scopus 로고
    • Using radial basis function on the general form of Chou's pseudo amino acid composition and PSSM to predict subcellular locations of proteins with both single and multiple sites
    • Huang, C.; Yuan, J. Using radial basis function on the general form of Chou's pseudo amino acid composition and PSSM to predict subcellular locations of proteins with both single and multiple sites. Biosystems 2013, 113, 50-57.
    • (2013) Biosystems , vol.113 , pp. 50-57
    • Huang, C.1    Yuan, J.2
  • 57
    • 70350437815 scopus 로고    scopus 로고
    • Prediction of subcellular localization of apoptosis protein using Chou's pseudo amino acid composition
    • Lin, H.; Wang, H.; Ding, H.; Chen, Y.L.; Li, Q.Z. Prediction of subcellular localization of apoptosis protein using Chou's pseudo amino acid composition. Acta Biotheor. 2009, 57, 321-330.
    • (2009) Acta Biotheor. , vol.57 , pp. 321-330
    • Lin, H.1    Wang, H.2    Ding, H.3    Chen, Y.L.4    Li, Q.Z.5
  • 58
    • 84873955239 scopus 로고    scopus 로고
    • GOASVM: A subcellular location predictor by incorporating term-frequency gene ontology into the general form of Chou's pseudo-amino acid composition
    • Wan, S.; Mak, M.W.; Kung, S.Y. GOASVM: A subcellular location predictor by incorporating term-frequency gene ontology into the general form of Chou's pseudo-amino acid composition. J. Theor. Biol. 2013, 323, 40-48.
    • (2013) J. Theor. Biol. , vol.323 , pp. 40-48
    • Wan, S.1    Mak, M.W.2    Kung, S.Y.3
  • 59
    • 84880994178 scopus 로고    scopus 로고
    • Predicting protein subchloroplast locations with both single and multiple sites via three different modes of Chou's pseudo amino acid compositions
    • Huang, C.; Yuan, J.Q. Predicting protein subchloroplast locations with both single and multiple sites via three different modes of Chou's pseudo amino acid compositions. J. Theor. Biol. 2013, 335, 205-212.
    • (2013) J. Theor. Biol. , vol.335 , pp. 205-212
    • Huang, C.1    Yuan, J.Q.2
  • 60
    • 84870215870 scopus 로고    scopus 로고
    • Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition
    • Chen, Y.K.; Li, K.B. Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition. J. Theor. Biol. 2013, 318, 1-12.
    • (2013) J. Theor. Biol. , vol.318 , pp. 1-12
    • Chen, Y.K.1    Li, K.B.2
  • 61
    • 84876379510 scopus 로고    scopus 로고
    • A Multilabel model based on Chou's pseudo-amino acid composition for identifying membrane proteins with both single and multiple functional types
    • Huang, C.; Yuan, J.Q. A Multilabel model based on Chou's pseudo-amino acid composition for identifying membrane proteins with both single and multiple functional types. J. Membr. Biol. 2013, 246, 327-334.
    • (2013) J. Membr. Biol. , vol.246 , pp. 327-334
    • Huang, C.1    Yuan, J.Q.2
  • 62
    • 84858833657 scopus 로고    scopus 로고
    • Discriminating outer membrane proteins with fuzzy K-nearest neighbor algorithms based on the general form of Chou's PseAAC
    • Hayat, M.; Khan, A. Discriminating outer membrane proteins with fuzzy K-nearest neighbor algorithms based on the general form of Chou's PseAAC. Protein Pept. Lett. 2012, 19, 411-421.
    • (2012) Protein Pept. Lett. , vol.19 , pp. 411-421
    • Hayat, M.1    Khan, A.2
  • 63
    • 84873572573 scopus 로고    scopus 로고
    • Prediction of allergenic proteins by means of the concept of Chou's pseudo amino acid composition and a machine learning approach
    • Mohabatkar, H.; Beigi, M.M.; Abdolahi, K.; Mohsenzadeh, S. Prediction of allergenic proteins by means of the concept of Chou's pseudo amino acid composition and a machine learning approach. Med. Chem. 2013, 9, 133-137.
    • (2013) Med. Chem. , vol.9 , pp. 133-137
    • Mohabatkar, H.1    Beigi, M.M.2    Abdolahi, K.3    Mohsenzadeh, S.4
  • 64
    • 84855690179 scopus 로고    scopus 로고
    • Prediction of metalloproteinase family based on the concept of Chou's pseudo amino acid composition using a machine learning approach
    • Mohammad Beigi, M.; Behjati, M.; Mohabatkar, H. Prediction of metalloproteinase family based on the concept of Chou's pseudo amino acid composition using a machine learning approach. J. Struct. Funct. Genomics 2011, 12, 191-197.
    • (2011) J. Struct. Funct. Genomics , vol.12 , pp. 191-197
    • Mohammad Beigi, M.1    Behjati, M.2    Mohabatkar, H.3
  • 65
    • 78649324596 scopus 로고    scopus 로고
    • A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
    • Sahu, S.S.; Panda, G. A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction. Comput. Biol. Chem. 2010, 34, 320-327.
    • (2010) Comput. Biol. Chem. , vol.34 , pp. 320-327
    • Sahu, S.S.1    Panda, G.2
  • 66
    • 84865373769 scopus 로고    scopus 로고
    • Identifying GPCRs and their types with Chou's pseudo amino acid composition: An approach from multi-scale energy representation and position specific scoring matrix
    • Zia Ur, R.; Khan, A. Identifying GPCRs and their types with Chou's pseudo amino acid composition: An approach from multi-scale energy representation and position specific scoring matrix. Protein Pept. Lett. 2012, 19, 890-903.
    • (2012) Protein Pept. Lett. , vol.19 , pp. 890-903
    • Zia Ur, R.1    Khan, A.2
  • 67
    • 84890539710 scopus 로고    scopus 로고
    • Using ensemble SVM to identify human GPCRs N-linked glycosylation sites based on the general form of Chou's PseAAC
    • Xie, H.L.; Fu, L.; Nie, X.D. Using ensemble SVM to identify human GPCRs N-linked glycosylation sites based on the general form of Chou's PseAAC. Protein Eng. Des. Sel. 2013, 26, 735-742.
    • (2013) Protein Eng. Des. Sel. , vol.26 , pp. 735-742
    • Xie, H.L.1    Fu, L.2    Nie, X.D.3
  • 68
    • 50949129207 scopus 로고    scopus 로고
    • Using Chou's pseudo amino acid composition to predict protein quaternary structure: A sequence-segmented PseAAC approach
    • Zhang, S.W.; Chen, W.; Yang, F.; Pan, Q. Using Chou's pseudo amino acid composition to predict protein quaternary structure: A sequence-segmented PseAAC approach. Amino Acids 2008, 35, 591-598.
    • (2008) Amino Acids , vol.35 , pp. 591-598
    • Zhang, S.W.1    Chen, W.2    Yang, F.3    Pan, Q.4
  • 69
    • 84868109035 scopus 로고    scopus 로고
    • Identifying protein quaternary structural attributes by incorporating physicochemical properties into the general form of Chou's PseAAC via discrete wavelet transform
    • Sun, X.Y.; Shi, S.P.; Qiu, J.D.; Suo, S.B.; Huang, S.Y.; Liang, R.P. Identifying protein quaternary structural attributes by incorporating physicochemical properties into the general form of Chou's PseAAC via discrete wavelet transform. Mol. BioSyst. 2012, 8, 3178-3184.
    • (2012) Mol. BioSyst. , vol.8 , pp. 3178-3184
    • Sun, X.Y.1    Shi, S.P.2    Qiu, J.D.3    Suo, S.B.4    Huang, S.Y.5    Liang, R.P.6
  • 70
    • 43149097851 scopus 로고    scopus 로고
    • Genetic programming for creating Chou's pseudo amino acid based features for submitochondria localization
    • Nanni, L.; Lumini, A. Genetic programming for creating Chou's pseudo amino acid based features for submitochondria localization. Amino Acids 2008, 34, 653-660.
    • (2008) Amino Acids , vol.34 , pp. 653-660
    • Nanni, L.1    Lumini, A.2
  • 71
    • 84864779292 scopus 로고    scopus 로고
    • Predicting protein submitochondria locations by combining different descriptors into the general form of Chou's pseudo amino acid composition
    • Fan, G.L.; Li, Q.Z. Predicting protein submitochondria locations by combining different descriptors into the general form of Chou's pseudo amino acid composition. Amino Acids 2012, 43, 545-555.
    • (2012) Amino Acids , vol.43 , pp. 545-555
    • Fan, G.L.1    Li, Q.Z.2
  • 72
    • 80155143429 scopus 로고    scopus 로고
    • Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization
    • Mei, S. Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization. J. Theor. Biol. 2012, 293, 121-130.
    • (2012) J. Theor. Biol. , vol.293 , pp. 121-130
    • Mei, S.1
  • 73
    • 67349244013 scopus 로고    scopus 로고
    • Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
    • Zeng, Y.H.; Guo, Y.Z.; Xiao, R.Q.; Yang, L.; Yu, L.Z.; Li, M.L. Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach. J. Theor. Biol. 2009, 259, 366-372.
    • (2009) J. Theor. Biol. , vol.259 , pp. 366-372
    • Zeng, Y.H.1    Guo, Y.Z.2    Xiao, R.Q.3    Yang, L.4    Yu, L.Z.5    Li, M.L.6
  • 74
    • 77649337793 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
    • Esmaeili, M.; Mohabatkar, H.; Mohsenzadeh, S. Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses. J. Theor. Biol. 2010, 263, 203-209.
    • (2010) J. Theor. Biol. , vol.263 , pp. 203-209
    • Esmaeili, M.1    Mohabatkar, H.2    Mohsenzadeh, S.3
  • 75
    • 77958497871 scopus 로고    scopus 로고
    • Prediction of cyclin proteins using Chou's pseudo amino acid composition
    • Mohabatkar, H. Prediction of cyclin proteins using Chou's pseudo amino acid composition. Protein Pept. Lett. 2010, 17, 1207-1214.
    • (2010) Protein Pept. Lett. , vol.17 , pp. 1207-1214
    • Mohabatkar, H.1
  • 76
    • 79955564229 scopus 로고    scopus 로고
    • Prediction of GABA(A) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
    • Mohabatkar, H.; Mohammad Beigi, M.; Esmaeili, A. Prediction of GABA(A) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine. J. Theor. Biol. 2011, 281, 18-23.
    • (2011) J. Theor. Biol. , vol.281 , pp. 18-23
    • Mohabatkar, H.1    Mohammad Beigi, M.2    Esmaeili, A.3
  • 77
    • 59649123088 scopus 로고    scopus 로고
    • Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
    • Georgiou, D.N.; Karakasidis, T.E.; Nieto, J.J.; Torres, A. Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition. J. Theor. Biol. 2009, 257, 17-26.
    • (2009) J. Theor. Biol. , vol.257 , pp. 17-26
    • Georgiou, D.N.1    Karakasidis, T.E.2    Nieto, J.J.3    Torres, A.4
  • 78
    • 45649083292 scopus 로고    scopus 로고
    • Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo amino acid composition
    • Zhang, G.Y.; Fang, B.S. Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo amino acid composition. J. Theor. Biol. 2008, 253, 310-315.
    • (2008) J. Theor. Biol. , vol.253 , pp. 310-315
    • Zhang, G.Y.1    Fang, B.S.2
  • 79
    • 34548439881 scopus 로고    scopus 로고
    • Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
    • Zhou, X.B.; Chen, C.; Li, Z.C.; Zou, X.Y. Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes. J. Theor. Biol. 2007, 248, 546-551.
    • (2007) J. Theor. Biol. , vol.248 , pp. 546-551
    • Zhou, X.B.1    Chen, C.2    Li, Z.C.3    Zou, X.Y.4
  • 80
    • 84892972298 scopus 로고    scopus 로고
    • Protein remote homology detection by combining Chou's pseudo amino acid composition and profile-based protein representation
    • Liu, B.; Wang, X.; Zou, Q.; Dong, Q.; Chen, Q. Protein remote homology detection by combining Chou's pseudo amino acid composition and profile-based protein representation. Mol. Informa. 2013, 32, 775-782.
    • (2013) Mol. Informa. , vol.32 , pp. 775-782
    • Liu, B.1    Wang, X.2    Zou, Q.3    Dong, Q.4    Chen, Q.5
  • 81
    • 84896693437 scopus 로고    scopus 로고
    • A short survey on genetic sequences, Chou's pseudo amino acid composition and its combination with fuzzy set theory
    • Georgiou, D.N.; Karakasidis, T.E.; Megaritis, A.C. A short survey on genetic sequences, Chou's pseudo amino acid composition and its combination with fuzzy set theory. Open Bioinforma. J. 2013, 7, 41-48.
    • (2013) Open Bioinforma. J. , vol.7 , pp. 41-48
    • Georgiou, D.N.1    Karakasidis, T.E.2    Megaritis, A.C.3
  • 82
    • 84886433492 scopus 로고    scopus 로고
    • Predicting anticancer peptides with Chou's pseudo amino acid composition and investigating their mutagenicity via Ames test
    • Hajisharifi, Z.; Piryaiee, M.; Mohammad Beigi, M.; Behbahani, M.; Mohabatkar, H. Predicting anticancer peptides with Chou's pseudo amino acid composition and investigating their mutagenicity via Ames test. J. Theor. Biol. 2014, 341, 34-40.
    • (2014) J. Theor. Biol. , vol.341 , pp. 34-40
    • Hajisharifi, Z.1    Piryaiee, M.2    Mohammad Beigi, M.3    Behbahani, M.4    Mohabatkar, H.5
  • 83
    • 79951518208 scopus 로고    scopus 로고
    • Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review)
    • Chou, K.C. Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review). J. Theor. Biol. 2011, 273, 236-247.
    • (2011) J. Theor. Biol. , vol.273 , pp. 236-247
    • Chou, K.C.1
  • 84
    • 84859298511 scopus 로고    scopus 로고
    • Identification of colorectal cancer related genes with mRMR and shortest path in protein-protein interaction network
    • Li, B.Q.; Huang, T.; Liu, L.; Cai, Y.D.; Chou, K.C. Identification of colorectal cancer related genes with mRMR and shortest path in protein-protein interaction network. PLoS One 2012, 7, e33393.
    • (2012) PLoS One , vol.7
    • Li, B.Q.1    Huang, T.2    Liu, L.3    Cai, Y.D.4    Chou, K.C.5
  • 85
    • 84859499974 scopus 로고    scopus 로고
    • Hepatitis C virus network based classification of hepatocellular cirrhosis and carcinoma
    • Huang, T.; Wang, J.; Cai, Y.D.; Yu, H.; Chou, K.C. Hepatitis C virus network based classification of hepatocellular cirrhosis and carcinoma. PLoS One 2012, 7, e34460.
    • (2012) PLoS One , vol.7
    • Huang, T.1    Wang, J.2    Cai, Y.D.3    Yu, H.4    Chou, K.C.5
  • 86
    • 84876592631 scopus 로고    scopus 로고
    • Signal propagation in protein interaction network during colorectal cancer progression
    • Jiang, Y.; Huang, T.; Lei, C.; Gao, Y.F.; Cai, Y.D.; Chou, K.C. Signal propagation in protein interaction network during colorectal cancer progression. BioMed Res. Int. 2013, 2013, 287019.
    • (2013) BioMed Res. Int. 2013 , pp. 287019
    • Jiang, Y.1    Huang, T.2    Lei, C.3    Gao, Y.F.4    Cai, Y.D.5    Chou, K.C.6
  • 87
    • 84859932176 scopus 로고    scopus 로고
    • PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou's pseudo-amino acid compositions
    • Du, P.; Wang, X.; Xu, C.; Gao, Y. PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou's pseudo-amino acid compositions. Anal. Biochem. 2012, 425, 117-119.
    • (2012) Anal. Biochem. , vol.425 , pp. 117-119
    • Du, P.1    Wang, X.2    Xu, C.3    Gao, Y.4
  • 88
    • 84875576158 scopus 로고    scopus 로고
    • Propy: A tool to generate various modes of Chou's PseAAC
    • Cao, D.S.; Xu, Q.S.; Liang, Y.Z. Propy: A tool to generate various modes of Chou's PseAAC. Bioinformatics 2013, 29, 960-962.
    • (2013) Bioinformatics , vol.29 , pp. 960-962
    • Cao, D.S.1    Xu, Q.S.2    Liang, Y.Z.3
  • 89
    • 37549004451 scopus 로고    scopus 로고
    • PseAAC: A flexible web-server for generating various kinds of protein pseudo amino acid composition
    • Shen, H.B.; Chou, K.C. PseAAC: A flexible web-server for generating various kinds of protein pseudo amino acid composition. Anal. Biochem. 2008, 373, 386-388.
    • (2008) Anal. Biochem. , vol.373 , pp. 386-388
    • Shen, H.B.1    Chou, K.C.2
  • 90
    • 84893021381 scopus 로고    scopus 로고
    • iEzy-Drug: A web server for identifying the interaction between enzymes and drugs in cellular networking
    • Min, J.L.; Xiao, X.; Chou, K.C. iEzy-Drug: A web server for identifying the interaction between enzymes and drugs in cellular networking. BioMed Res. Int. 2013, 2013, 701317.
    • (2013) BioMed Res. Int. 2013 , pp. 701317
    • Min, J.L.1    Xiao, X.2    Chou, K.C.3
  • 91
    • 84885156363 scopus 로고    scopus 로고
    • iSNO-AAPair: Incorporating amino acid pairwise coupling into PseAAC for predicting cysteine S-nitrosylation sites in proteins
    • Xu, Y.; Shao, X.J.; Wu, L.Y.; Deng, N.Y.; Chou, K.C. iSNO-AAPair: Incorporating amino acid pairwise coupling into PseAAC for predicting cysteine S-nitrosylation sites in proteins. PeerJ 2013, 1, e171.
    • (2013) PeerJ , vol.1
    • Xu, Y.1    Shao, X.J.2    Wu, L.Y.3    Deng, N.Y.4    Chou, K.C.5
  • 92
    • 84892954329 scopus 로고    scopus 로고
    • Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection
    • doi:10.1093/bioinformatics/btt709
    • Liu, B.; Zhang, D.; Xu, R.; Xu, J.; Wang, X.; Chen, Q.; Dong, Q.; Chou, K.C. Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection. Bioinformatics 2013, doi:10.1093/bioinformatics/btt709.
    • (2013) Bioinformatics
    • Liu, B.1    Zhang, D.2    Xu, R.3    Xu, J.4    Wang, X.5    Chen, Q.6    Dong, Q.7    Chou, K.C.8
  • 93
    • 77958586156 scopus 로고    scopus 로고
    • Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition
    • Lin, H.; Ding, H. Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition. J. Theor. Biol. 2011, 269, 64-69.
    • (2011) J. Theor. Biol. , vol.269 , pp. 64-69
    • Lin, H.1    Ding, H.2
  • 94
    • 0033406884 scopus 로고    scopus 로고
    • Protein secondary structural content prediction
    • Liu, W.; Chou, K.C. Protein secondary structural content prediction. Protein Eng. 1999, 12, 1041-1050.
    • (1999) Protein Eng. , vol.12 , pp. 1041-1050
    • Liu, W.1    Chou, K.C.2
  • 95
    • 34249807035 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protein structural class: Approached by incorporating 400 dipeptide components
    • Lin, H.; Li, Q.Z. Using pseudo amino acid composition to predict protein structural class: Approached by incorporating 400 dipeptide components. J. Comput. Chem. 2007, 28, 1463-1466.
    • (2007) J. Comput. Chem. , vol.28 , pp. 1463-1466
    • Lin, H.1    Li, Q.Z.2
  • 96
    • 0032781417 scopus 로고    scopus 로고
    • Using pair-coupled amino acid composition to predict protein secondary structure content
    • Chou, K.C. Using pair-coupled amino acid composition to predict protein secondary structure content. J. Protein Chem. 1999, 18, 473-480.
    • (1999) J. Protein Chem. , vol.18 , pp. 473-480
    • Chou, K.C.1
  • 97
    • 84876241526 scopus 로고    scopus 로고
    • Predicting subchloroplast locations of proteins based on the general form of Chou's pseudo amino acid composition: Approached from optimal tripeptide composition
    • doi:10.1142/S1793524513500034
    • Lin, H.; Ding, C.; Yuan, L.F.; Chen, W.; Ding, H.; Li, Z.Q.; Guo, F.B.; Hung, J.; Rao, N.N. Predicting subchloroplast locations of proteins based on the general form of Chou's pseudo amino acid composition: Approached from optimal tripeptide composition. Int. J. Biomath. 2013, 6, 1350003, doi:10.1142/S1793524513500034.
    • (2013) Int. J. Biomath. , vol.6 , pp. 1350003
    • Lin, H.1    Ding, C.2    Yuan, L.F.3    Chen, W.4    Ding, H.5    Li, Z.Q.6    Guo, F.B.7    Hung, J.8    Rao, N.N.9
  • 98
    • 0038519321 scopus 로고
    • Contribution of hydrophobic interactions to the stability of the globular conformation of proteins
    • Tanford, C. Contribution of hydrophobic interactions to the stability of the globular conformation of proteins. J. Am. Chem. Soc. 1962, 84, 4240-4274.
    • (1962) J. Am. Chem. Soc. , vol.84 , pp. 4240-4274
    • Tanford, C.1
  • 99
    • 0000448982 scopus 로고
    • Prediction of protein antigenic determinants from amino acid sequences
    • Hopp, T.P.; Woods, K.R. Prediction of protein antigenic determinants from amino acid sequences. Proc. Natl. Acad. Sci. USA 1981, 78, 3824-3828.
    • (1981) Proc. Natl. Acad. Sci. USA , vol.78 , pp. 3824-3828
    • Hopp, T.P.1    Woods, K.R.2
  • 102
    • 34548301416 scopus 로고    scopus 로고
    • Prediction of linear B-cell epitopes using amino acid pair antigenicity scale
    • Chen, J.; Liu, H.; Yang, J.; Chou, K.C. Prediction of linear B-cell epitopes using amino acid pair antigenicity scale. Amino Acids 2007, 33, 423-428.
    • (2007) Amino Acids , vol.33 , pp. 423-428
    • Chen, J.1    Liu, H.2    Yang, J.3    Chou, K.C.4
  • 103
    • 0037195776 scopus 로고    scopus 로고
    • Using functional domain composition and support vector machines for prediction of protein subcellular location
    • Chou, K.C.; Cai, Y.D. Using functional domain composition and support vector machines for prediction of protein subcellular location. J. Biol. Chem. 2002, 277, 45765-45769.
    • (2002) J. Biol. Chem. , vol.277 , pp. 45765-45769
    • Chou, K.C.1    Cai, Y.D.2
  • 104
    • 84870044593 scopus 로고    scopus 로고
    • Predicting secretory proteins of malaria parasite by incorporating sequence evolution information into pseudo amino acid composition via grey system model
    • Lin, W.Z.; Fang, J.A.; Xiao, X.; Chou, K.C. Predicting secretory proteins of malaria parasite by incorporating sequence evolution information into pseudo amino acid composition via grey system model. PLoS One 2012, 7, e49040.
    • (2012) PLoS One , vol.7
    • Lin, W.Z.1    Fang, J.A.2    Xiao, X.3    Chou, K.C.4
  • 105
    • 33748449804 scopus 로고    scopus 로고
    • Using stacked generalization to predict membrane protein types based on pseudo amino acid composition
    • Wang, S.Q.; Yang, J.; Chou, K.C. Using stacked generalization to predict membrane protein types based on pseudo amino acid composition. J. Theor. Biol. 2006, 242, 941-946.
    • (2006) J. Theor. Biol. , vol.242 , pp. 941-946
    • Wang, S.Q.1    Yang, J.2    Chou, K.C.3
  • 106
    • 0038636605 scopus 로고    scopus 로고
    • Support vector machines for predicting membrane protein types by using functional domain composition
    • Cai, Y.D.; Zhou, G.P.; Chou, K.C. Support vector machines for predicting membrane protein types by using functional domain composition. Biophys. J. 2003, 84, 3257-3263.
    • (2003) Biophys. J. , vol.84 , pp. 3257-3263
    • Cai, Y.D.1    Zhou, G.P.2    Chou, K.C.3
  • 109
    • 84877758233 scopus 로고    scopus 로고
    • Some remarks on predicting multi-label attributes in molecular biosystems
    • Chou, K.C. Some remarks on predicting multi-label attributes in molecular biosystems. Mol. Biosyst. 2013, 9, 1092-1100.
    • (2013) Mol. Biosyst. , vol.9 , pp. 1092-1100
    • Chou, K.C.1
  • 110
    • 0035030201 scopus 로고    scopus 로고
    • Using subsite coupling to predict signal peptides
    • Chou, K.C. Using subsite coupling to predict signal peptides. Protein Eng. 2001, 14, 75-79.
    • (2001) Protein Eng. , vol.14 , pp. 75-79
    • Chou, K.C.1
  • 111
    • 0035178419 scopus 로고    scopus 로고
    • Prediction of protein signal sequences and their cleavage sites
    • Chou, K.C. Prediction of protein signal sequences and their cleavage sites. Proteins: Struct. Funct. Genet. 2001, 42, 136-139.
    • (2001) Proteins: Struct. Funct. Genet. , vol.42 , pp. 136-139
    • Chou, K.C.1
  • 112
    • 79953316878 scopus 로고    scopus 로고
    • iLoc-Euk: A multi-label classifier for predicting the subcellular localization of singleplex and multiplex eukaryotic proteins
    • Chou, K.C.; Wu, Z.C.; Xiao, X. iLoc-Euk: A multi-label classifier for predicting the subcellular localization of singleplex and multiplex eukaryotic proteins. PLoS One 2011, 6, e18258.
    • (2011) PLoS One , vol.6
    • Chou, K.C.1    Wu, Z.C.2    Xiao, X.3
  • 113
    • 80755158862 scopus 로고    scopus 로고
    • iLoc-Plant: A multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites
    • Wu, Z.C.; Xiao, X.; Chou, K.C. iLoc-Plant: A multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites. Mol. BioSyst. 2011, 7, 3287-3297.
    • (2011) Mol. BioSyst. , vol.7 , pp. 3287-3297
    • Wu, Z.C.1    Xiao, X.2    Chou, K.C.3
  • 114
    • 84858255890 scopus 로고    scopus 로고
    • iLoc-Gpos: A multi-layer classifier for predicting the subcellular localization of singleplex and multiplex gram-positive bacterial proteins
    • Wu, Z.C.; Xiao, X.; Chou, K.C. iLoc-Gpos: A multi-layer classifier for predicting the subcellular localization of singleplex and multiplex gram-positive bacterial proteins. Protein Pept. Lett. 2012, 19, 4-14.
    • (2012) Protein Pept. Lett. , vol.19 , pp. 4-14
    • Wu, Z.C.1    Xiao, X.2    Chou, K.C.3
  • 115
    • 79959667141 scopus 로고    scopus 로고
    • iLoc-Virus: A multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
    • Xiao, X.; Wu, Z.C.; Chou, K.C. iLoc-Virus: A multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites. J. Theor. Biol. 2011, 284, 42-51.
    • (2011) J. Theor. Biol. , vol.284 , pp. 42-51
    • Xiao, X.1    Wu, Z.C.2    Chou, K.C.3
  • 116
    • 79959282135 scopus 로고    scopus 로고
    • A multi-label classifier for predicting the subcellular localization of gram-negative bacterial proteins with both single and multiple sites
    • Xiao, X.; Wu, Z.C.; Chou, K.C. A multi-label classifier for predicting the subcellular localization of gram-negative bacterial proteins with both single and multiple sites. PLoS One 2011, 6, e20592.
    • (2011) PLoS One , vol.6
    • Xiao, X.1    Wu, Z.C.2    Chou, K.C.3
  • 117
    • 84855641685 scopus 로고    scopus 로고
    • iLoc-Hum: Using accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites
    • Chou, K.C.; Wu, Z.C.; Xiao, X. iLoc-Hum: Using accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites. Mol. Biosyst. 2012, 8, 629-641.
    • (2012) Mol. Biosyst. , vol.8 , pp. 629-641
    • Chou, K.C.1    Wu, Z.C.2    Xiao, X.3
  • 118
    • 84874928986 scopus 로고    scopus 로고
    • iLoc-Animal: A multi-label learning classifier for predicting subcellular localization of animal proteins
    • Lin, W.Z.; Fang, J.A.; Xiao, X.; Chou, K.C. iLoc-Animal: A multi-label learning classifier for predicting subcellular localization of animal proteins. Mol. Biosyst. 2013, 9, 634-644.
    • (2013) Mol. Biosyst. , vol.9 , pp. 634-644
    • Lin, W.Z.1    Fang, J.A.2    Xiao, X.3    Chou, K.C.4
  • 119
    • 84859732713 scopus 로고    scopus 로고
    • Predicting Anatomical Therapeutic Chemical (ATC) classification of drugs by integrating chemical-chemical interactions and similarities
    • Chen, L.; Zeng, W.M.; Cai, Y.D.; Feng, K.Y.; Chou, K.C. Predicting Anatomical Therapeutic Chemical (ATC) classification of drugs by integrating chemical-chemical interactions and similarities. PLoS One 2012, 7, e35254.
    • (2012) PLoS One , vol.7
    • Chen, L.1    Zeng, W.M.2    Cai, Y.D.3    Feng, K.Y.4    Chou, K.C.5
  • 120
    • 0029157083 scopus 로고
    • Review: Prediction of protein structural classes
    • Chou, K.C.; Zhang, C.T. Review: Prediction of protein structural classes. Crit. Rev. Biochem. Mol. Biol. 1995, 30, 275-349.
    • (1995) Crit. Rev. Biochem. Mol. Biol. , vol.30 , pp. 275-349
    • Chou, K.C.1    Zhang, C.T.2
  • 121
    • 84879708816 scopus 로고    scopus 로고
    • Discriminating bioluminescent proteins by incorporating average chemical shift and evolutionary information into the general form of Chou's pseudo amino acid composition
    • Fan, G.L.; Li, Q.Z. Discriminating bioluminescent proteins by incorporating average chemical shift and evolutionary information into the general form of Chou's pseudo amino acid composition. J. Theor. Biol. 2013, 334, 45-51.
    • (2013) J. Theor. Biol. , vol.334 , pp. 45-51
    • Fan, G.L.1    Li, Q.Z.2
  • 122
    • 65649105512 scopus 로고    scopus 로고
    • Prediction of G-protein-coupled receptor classes based on the concept of Chou's pseudo amino acid composition: An approach from discrete wavelet transform
    • Qiu, J.D.; Huang, J.H.; Liang, R.P.; Lu, X.Q. Prediction of G-protein-coupled receptor classes based on the concept of Chou's pseudo amino acid composition: an approach from discrete wavelet transform. Anal. Biochem. 2009, 390, 68-73.
    • (2009) Anal. Biochem. , vol.390 , pp. 68-73
    • Qiu, J.D.1    Huang, J.H.2    Liang, R.P.3    Lu, X.Q.4
  • 123
    • 72449203319 scopus 로고    scopus 로고
    • Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology
    • Chou, K.C. Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology. Curr. Proteomics 2009, 6, 262-274.
    • (2009) Curr. Proteomics , vol.6 , pp. 262-274
    • Chou, K.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.