-
1
-
-
0028934541
-
REST: a mammalian silencer protein that restricts sodium channel gene expression to neurons
-
Chong JA, Tapia-Ramírez J, Kim S, Toledo-Aral JJ, Zheng Y, et al. (1995) REST: a mammalian silencer protein that restricts sodium channel gene expression to neurons. Cell 80: 949-957.
-
(1995)
Cell
, vol.80
, pp. 949-957
-
-
Chong, J.A.1
Tapia-Ramírez, J.2
Kim, S.3
Toledo-Aral, J.J.4
Zheng, Y.5
-
2
-
-
0028968802
-
The neuron-restrictive silencer factor (NRSF): a coordinate repressor of multiple neuron-specific genes
-
Schoenherr C, Anderson D, (1995) The neuron-restrictive silencer factor (NRSF): a coordinate repressor of multiple neuron-specific genes. Science 267: 1360-1363.
-
(1995)
Science
, vol.267
, pp. 1360-1363
-
-
Schoenherr, C.1
Anderson, D.2
-
3
-
-
0030020259
-
A zinc finger protein that represses transcription of the human MHC class II gene, DPA
-
Scholl T, Stevens MB, Mahanta S, Strominger JL, (1996) A zinc finger protein that represses transcription of the human MHC class II gene, DPA. J Immunol 156: 1448-1457.
-
(1996)
J Immunol
, vol.156
, pp. 1448-1457
-
-
Scholl, T.1
Stevens, M.B.2
Mahanta, S.3
Strominger, J.L.4
-
4
-
-
79960007644
-
The Master Negative Regulator REST/NRSF Controls Adult Neurogenesis by Restraining the Neurogenic Program in Quiescent Stem Cells
-
doi 10.1523/JNEUROSCI.1604-11.2011
-
Gao Z, Ure K, Ding P, Nashaat M, Yuan L, et al. (2011) The Master Negative Regulator REST/NRSF Controls Adult Neurogenesis by Restraining the Neurogenic Program in Quiescent Stem Cells. J Neurosci 31: 9772-9786 doi:10.1523/JNEUROSCI.1604-11.2011.
-
(2011)
J Neurosci
, vol.31
, pp. 9772-9786
-
-
Gao, Z.1
Ure, K.2
Ding, P.3
Nashaat, M.4
Yuan, L.5
-
5
-
-
84864292540
-
REST regulates the pool size of the different neural lineages by restricting the generation of neurons and oligodendrocytes from neural stem/progenitor cells
-
doi 10.1242/dev.074765
-
Covey MV, Streb JW, Spektor R, Ballas N, (2012) REST regulates the pool size of the different neural lineages by restricting the generation of neurons and oligodendrocytes from neural stem/progenitor cells. Development 139: 2878-2890 doi:10.1242/dev.074765.
-
(2012)
Development
, vol.139
, pp. 2878-2890
-
-
Covey, M.V.1
Streb, J.W.2
Spektor, R.3
Ballas, N.4
-
6
-
-
84857496280
-
Repressor Element 1 Silencing Transcription Factor Couples Loss of Pluripotency with Neural Induction and Neural Differentiation
-
doi 10.1002/stem.1004
-
Soldati C, Bithell A, Johnston C, Wong K-Y, Teng S-W, et al. (2012) Repressor Element 1 Silencing Transcription Factor Couples Loss of Pluripotency with Neural Induction and Neural Differentiation. STEM CELLS 30: 425-434 doi:10.1002/stem.1004.
-
(2012)
STEM CELLS
, vol.30
, pp. 425-434
-
-
Soldati, C.1
Bithell, A.2
Johnston, C.3
Wong, K.-Y.4
Teng, S.-W.5
-
7
-
-
78649849473
-
REST and CoREST are transcriptional and epigenetic regulators of seminal neural fate decisions
-
Qureshi IA, Gokhan S, Mehler MF, (2010) REST and CoREST are transcriptional and epigenetic regulators of seminal neural fate decisions. Cell Cycle 9: 4477-4486.
-
(2010)
Cell Cycle
, vol.9
, pp. 4477-4486
-
-
Qureshi, I.A.1
Gokhan, S.2
Mehler, M.F.3
-
8
-
-
84866731331
-
REST-dependent epigenetic remodeling promotes the developmental switch in synaptic NMDA receptors
-
doi 10.1038/nn.3214
-
Rodenas-Ruano A, Chávez AE, Cossio MJ, Castillo PE, Zukin RS, (2012) REST-dependent epigenetic remodeling promotes the developmental switch in synaptic NMDA receptors. Nat Neurosci 15: 1382-1390 doi:10.1038/nn.3214.
-
(2012)
Nat Neurosci
, vol.15
, pp. 1382-1390
-
-
Rodenas-Ruano, A.1
Chávez, A.E.2
Cossio, M.J.3
Castillo, P.E.4
Zukin, R.S.5
-
9
-
-
34250767817
-
Chromatin crosstalk in development and disease: lessons from REST
-
doi 10.1038/nrg2100
-
Ooi L, Wood IC, (2007) Chromatin crosstalk in development and disease: lessons from REST. Nat Rev Genet 8: 544-554 doi:10.1038/nrg2100.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 544-554
-
-
Ooi, L.1
Wood, I.C.2
-
10
-
-
84878138458
-
REST: an oncogene or a tumor suppressor
-
doi 10.1016/j.tcb.2013.01.006
-
Negrini S, Prada I, D'Alessandro R, Meldolesi J, (2013) REST: an oncogene or a tumor suppressor? Trends in Cell Biology 23: 289-295 doi:10.1016/j.tcb.2013.01.006.
-
(2013)
Trends in Cell Biology
, vol.23
, pp. 289-295
-
-
Negrini, S.1
Prada, I.2
D'Alessandro, R.3
Meldolesi, J.4
-
11
-
-
25844518743
-
The many faces of REST oversee epigenetic programming of neuronal genes
-
doi 10.1016/j.conb.2005.08.015
-
Ballas N, Mandel G, (2005) The many faces of REST oversee epigenetic programming of neuronal genes. Curr Opin Neurobiol 15: 500-506 doi:10.1016/j.conb.2005.08.015.
-
(2005)
Curr Opin Neurobiol
, vol.15
, pp. 500-506
-
-
Ballas, N.1
Mandel, G.2
-
12
-
-
84859260959
-
REST-Mediated Recruitment of Polycomb Repressor Complexes in Mammalian Cells
-
doi 10.1371/journal.pgen.1002494
-
Dietrich N, Lerdrup M, Landt E, Agrawal-Singh S, Bak M, et al. (2012) REST-Mediated Recruitment of Polycomb Repressor Complexes in Mammalian Cells. PLoS Genet 8: e1002494 doi:10.1371/journal.pgen.1002494.
-
(2012)
PLoS Genet
, vol.8
-
-
Dietrich, N.1
Lerdrup, M.2
Landt, E.3
Agrawal-Singh, S.4
Bak, M.5
-
13
-
-
60849088861
-
Profiling RE1/REST-mediated histone modifications in the human genome
-
Zheng D, Zhao K, Mehler MF, (2009) Profiling RE1/REST-mediated histone modifications in the human genome. Genome Biology 10: R9.
-
(2009)
Genome Biology
, vol.10
-
-
Zheng, D.1
Zhao, K.2
Mehler, M.F.3
-
14
-
-
33846936237
-
RE1 Silencing Transcription Factor Maintains a Repressive Chromatin Environment in Embryonic Hippocampal Neural Stem Cells
-
Greenway DJ, Street M, Jeffries A, Buckley NJ, (2007) RE1 Silencing Transcription Factor Maintains a Repressive Chromatin Environment in Embryonic Hippocampal Neural Stem Cells. STEM CELLS 25: 354-363.
-
(2007)
STEM CELLS
, vol.25
, pp. 354-363
-
-
Greenway, D.J.1
Street, M.2
Jeffries, A.3
Buckley, N.J.4
-
15
-
-
80051571400
-
Coassembly of REST and its cofactors at sites of gene repression in embryonic stem cells
-
doi 10.1101/gr.114488.110
-
Yu H-B, Johnson R, Kunarso G, Stanton LW, (2011) Coassembly of REST and its cofactors at sites of gene repression in embryonic stem cells. Genome Res 21: 1284-1293 doi:10.1101/gr.114488.110.
-
(2011)
Genome Res
, vol.21
, pp. 1284-1293
-
-
Yu, H.-B.1
Johnson, R.2
Kunarso, G.3
Stanton, L.W.4
-
16
-
-
0347052876
-
Distinct RE-1 Silencing Transcription Factor-containing Complexes Interact with Different Target Genes
-
doi 10.1074/jbc.M310353200
-
Belyaev ND, Wood IC, Bruce AW, Street M, Trinh J-B, et al. (2004) Distinct RE-1 Silencing Transcription Factor-containing Complexes Interact with Different Target Genes. J Biol Chem 279: 556-561 doi:10.1074/jbc.M310353200.
-
(2004)
J Biol Chem
, vol.279
, pp. 556-561
-
-
Belyaev, N.D.1
Wood, I.C.2
Bruce, A.W.3
Street, M.4
Trinh, J.-B.5
-
17
-
-
18744405062
-
Corepressor-dependent silencing of chromosomal regions encoding neuronal genes
-
doi 10.1126/science.1076469
-
Lunyak VV, Burgess R, Prefontaine GG, Nelson C, Sze S-H, et al. (2002) Corepressor-dependent silencing of chromosomal regions encoding neuronal genes. Science 298: 1747-1752 doi:10.1126/science.1076469.
-
(2002)
Science
, vol.298
, pp. 1747-1752
-
-
Lunyak, V.V.1
Burgess, R.2
Prefontaine, G.G.3
Nelson, C.4
Sze, S.-H.5
-
18
-
-
0030914242
-
The neuron-restrictive silencer element: A dual enhancer/silencer crucial for patterned expression of a nicotinic receptor gene in the brain
-
Bessis A, Champtiaux N, Chatelin L, Changeux J-P, (1997) The neuron-restrictive silencer element: A dual enhancer/silencer crucial for patterned expression of a nicotinic receptor gene in the brain. Proceedings of the National Academy of Sciences 94: 5906-5911.
-
(1997)
Proceedings of the National Academy of Sciences
, vol.94
, pp. 5906-5911
-
-
Bessis, A.1
Champtiaux, N.2
Chatelin, L.3
Changeux, J.-P.4
-
19
-
-
0035958045
-
Repressor element silencing transcription factor/neuron-restrictive silencing factor (REST/NRSF) can act as an enhancer as well as a repressor of corticotropin-releasing hormone gene transcription
-
doi 10.1074/jbc.M007745200
-
Seth KA, Majzoub JA, (2001) Repressor element silencing transcription factor/neuron-restrictive silencing factor (REST/NRSF) can act as an enhancer as well as a repressor of corticotropin-releasing hormone gene transcription. J Biol Chem 276: 13917-13923 doi:10.1074/jbc.M007745200.
-
(2001)
J Biol Chem
, vol.276
, pp. 13917-13923
-
-
Seth, K.A.1
Majzoub, J.A.2
-
20
-
-
0042818217
-
Regulation of Pax4 paired homeodomain gene by neuron-restrictive silencer factor
-
doi 10.1074/jbc.M305891200
-
Kemp DM, Lin JC, Habener JF, (2003) Regulation of Pax4 paired homeodomain gene by neuron-restrictive silencer factor. J Biol Chem 278: 35057-35062 doi:10.1074/jbc.M305891200.
-
(2003)
J Biol Chem
, vol.278
, pp. 35057-35062
-
-
Kemp, D.M.1
Lin, J.C.2
Habener, J.F.3
-
21
-
-
38049132607
-
Dual Role of NRSF/REST in Activation and Repression of the Glucocorticoid Response
-
Abramovitz L, Shapira T, Ben-Dror I, Dror V, Granot L, et al. (2008) Dual Role of NRSF/REST in Activation and Repression of the Glucocorticoid Response. Journal of Biological Chemistry 283: 110-119.
-
(2008)
Journal of Biological Chemistry
, vol.283
, pp. 110-119
-
-
Abramovitz, L.1
Shapira, T.2
Ben-Dror, I.3
Dror, V.4
Granot, L.5
-
22
-
-
50849103324
-
Novel function of neuron-restrictive silencer factor (NRSF) for posttranscriptional regulation
-
doi 10.1016/j.bbamcr.2008.06.019
-
Kim CS, Hwang CK, Song KY, Choi HS, Kim DK, et al. (2008) Novel function of neuron-restrictive silencer factor (NRSF) for posttranscriptional regulation. Biochim Biophys Acta 1783: 1835-1846 doi:10.1016/j.bbamcr.2008.06.019.
-
(2008)
Biochim Biophys Acta
, vol.1783
, pp. 1835-1846
-
-
Kim, C.S.1
Hwang, C.K.2
Song, K.Y.3
Choi, H.S.4
Kim, D.K.5
-
23
-
-
0036812481
-
Repressor Element-1 Silencing Transcription/Neuron-Restrictive Silencer Factor Is Required for Neural Sodium Channel Expression during Development of Xenopus
-
Armisén R, Fuentes R, Olguín P, Cabrejos ME, Kukuljan M, (2002) Repressor Element-1 Silencing Transcription/Neuron-Restrictive Silencer Factor Is Required for Neural Sodium Channel Expression during Development of Xenopus. J Neurosci 22: 8347-8351.
-
(2002)
J Neurosci
, vol.22
, pp. 8347-8351
-
-
Armisén, R.1
Fuentes, R.2
Olguín, P.3
Cabrejos, M.E.4
Kukuljan, M.5
-
24
-
-
34250159524
-
Genome-Wide Mapping of in Vivo Protein-DNA Interactions
-
Johnson DS, Mortazavi A, Myers RM, Wold B, (2007) Genome-Wide Mapping of in Vivo Protein-DNA Interactions. Science 316: 1497-1502.
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
25
-
-
84455200582
-
Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells
-
doi 10.1016/j.cell.2011.09.057
-
Ram O, Goren A, Amit I, Shoresh N, Yosef N, et al. (2011) Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells. Cell 147: 1628-1639 doi:10.1016/j.cell.2011.09.057.
-
(2011)
Cell
, vol.147
, pp. 1628-1639
-
-
Ram, O.1
Goren, A.2
Amit, I.3
Shoresh, N.4
Yosef, N.5
-
26
-
-
84872089137
-
DNA methylation changes are a late event in acute promyelocytic leukemia and coincide with loss of transcription factor binding
-
doi 10.1182/blood-2012-08-448860
-
Schoofs T, Rohde C, Hebestreit K, Klein H-U, Göllner S, et al. (2013) DNA methylation changes are a late event in acute promyelocytic leukemia and coincide with loss of transcription factor binding. Blood 121: 178-187 doi:10.1182/blood-2012-08-448860.
-
(2013)
Blood
, vol.121
, pp. 178-187
-
-
Schoofs, T.1
Rohde, C.2
Hebestreit, K.3
Klein, H.-U.4
Göllner, S.5
-
27
-
-
54949103985
-
REST Regulates Distinct Transcriptional Networks in Embryonic and Neural Stem Cells
-
doi 10.1371/journal.pbio.0060256
-
Johnson R, Teh CH, Kunarso G, Wong KY, Srinivasan G, et al. (2008) REST Regulates Distinct Transcriptional Networks in Embryonic and Neural Stem Cells. PLoS Biol 6: e256 doi:10.1371/journal.pbio.0060256.
-
(2008)
PLoS Biol
, vol.6
-
-
Johnson, R.1
Teh, C.H.2
Kunarso, G.3
Wong, K.Y.4
Srinivasan, G.5
-
28
-
-
84871984418
-
Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting
-
doi 10.1101/gr.142661.112
-
Arnold P, Schöler A, Pachkov M, Balwierz PJ, Jørgensen H, et al. (2013) Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting. Genome Res 23: 60-73 doi:10.1101/gr.142661.112.
-
(2013)
Genome Res
, vol.23
, pp. 60-73
-
-
Arnold, P.1
Schöler, A.2
Pachkov, M.3
Balwierz, P.J.4
Jørgensen, H.5
-
29
-
-
84856962477
-
Enhancer decommissioning by LSD1 during embryonic stem cell differentiation
-
doi 10.1038/nature10805
-
Whyte WA, Bilodeau S, Orlando DA, Hoke HA, Frampton GM, et al. (2012) Enhancer decommissioning by LSD1 during embryonic stem cell differentiation. Nature 482: 221-225 doi:10.1038/nature10805.
-
(2012)
Nature
, vol.482
, pp. 221-225
-
-
Whyte, W.A.1
Bilodeau, S.2
Orlando, D.A.3
Hoke, H.A.4
Frampton, G.M.5
-
30
-
-
77954041258
-
REST and CoREST Modulate Neuronal Subtype Specification, Maturation and Maintenance
-
Abrajano JJ, Qureshi IA, Gokhan S, Zheng D, Bergman A, et al. (2009) REST and CoREST Modulate Neuronal Subtype Specification, Maturation and Maintenance. Plos One 4: e7936.
-
(2009)
Plos One
, vol.4
-
-
Abrajano, J.J.1
Qureshi, I.A.2
Gokhan, S.3
Zheng, D.4
Bergman, A.5
-
31
-
-
70449578270
-
Differential Deployment of REST and CoREST Promotes Glial Subtype Specification and Oligodendrocyte Lineage Maturation
-
Abrajano JJ, Qureshi IA, Gokhan S, Zheng D, Bergman A, et al. (2009) Differential Deployment of REST and CoREST Promotes Glial Subtype Specification and Oligodendrocyte Lineage Maturation. Plos One 4: e7665.
-
(2009)
Plos One
, vol.4
-
-
Abrajano, J.J.1
Qureshi, I.A.2
Gokhan, S.3
Zheng, D.4
Bergman, A.5
-
32
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
doi 10.1038/nature05874
-
Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, et al. (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447: 799-816 doi:10.1038/nature05874.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Guigó, R.4
Gingeras, T.R.5
-
33
-
-
66449114042
-
Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level
-
doi 10.1101/gr.089086.108
-
Bruce AW, López-Contreras AJ, Flicek P, Down TA, Dhami P, et al. (2009) Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level. Genome Res 19: 994-1005 doi:10.1101/gr.089086.108.
-
(2009)
Genome Res
, vol.19
, pp. 994-1005
-
-
Bruce, A.W.1
López-Contreras, A.J.2
Flicek, P.3
Down, T.A.4
Dhami, P.5
-
34
-
-
79955550445
-
-
A user's guide to the encyclopedia of DNA elements (ENCODE), doi 10.1371/journal.pbio.1001046
-
A user's guide to the encyclopedia of DNA elements (ENCODE) (2011) PLoS Biol 9: e1001046 doi:10.1371/journal.pbio.1001046.
-
(2011)
PLoS Biol
, vol.9
-
-
-
35
-
-
57449100870
-
Design and analysis of ChIP-seq experiments for DNA-binding proteins
-
doi 10.1038/nbt.1508
-
Kharchenko PV, Tolstorukov MY, Park PJ, (2008) Design and analysis of ChIP-seq experiments for DNA-binding proteins. Nat Biotech 26: 1351-1359 doi:10.1038/nbt.1508.
-
(2008)
Nat Biotech
, vol.26
, pp. 1351-1359
-
-
Kharchenko, P.V.1
Tolstorukov, M.Y.2
Park, P.J.3
-
36
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey TL, Elkan C, (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2: 28-36.
-
(1994)
Proc Int Conf Intell Syst Mol Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
37
-
-
84859436530
-
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
-
doi 10.1093/nar/gkr1079
-
Pruitt KD, Tatusova T, Brown GR, Maglott DR, (2012) NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res 40: D130-D135 doi:10.1093/nar/gkr1079.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
39
-
-
77952214662
-
GREAT improves functional interpretation of cis-regulatory regions
-
doi 10.1038/nbt.1630
-
McLean CY, Bristor D, Hiller M, Clarke SL, Schaar BT, et al. (2010) GREAT improves functional interpretation of cis-regulatory regions. Nat Biotechnol 28: 495-501 doi:10.1038/nbt.1630.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 495-501
-
-
McLean, C.Y.1
Bristor, D.2
Hiller, M.3
Clarke, S.L.4
Schaar, B.T.5
-
40
-
-
78651332286
-
Pathway Commons, a web resource for biological pathway data
-
Cerami EG, Gross BE, Demir E, Rodchenkov I, Babur Ö, et al. (2010) Pathway Commons, a web resource for biological pathway data. Nucl Acids Res 39: D685-90 Available: http://nar.oxfordjournals.org/content/early/2010/11/10/nar.gkq1039. Accessed 23 May 2013.
-
(2010)
Nucl Acids Res
, vol.39
-
-
Cerami, E.G.1
Gross, B.E.2
Demir, E.3
Rodchenkov, I.4
Babur, Ö.5
-
41
-
-
0344441724
-
Interaction of the Repressor Element 1-silencing Transcription Factor (REST) with Target Genes
-
doi: 10.1016/j.jmb.2003.10.017
-
Wood IC, Belyaev ND, Bruce AW, Jones C, Mistry M, et al. (2003) Interaction of the Repressor Element 1-silencing Transcription Factor (REST) with Target Genes. Journal of Molecular Biology 334: 863-874 doi:10.1016/j.jmb.2003.10.017.
-
(2003)
Journal of Molecular Biology
, vol.334
, pp. 863-874
-
-
Wood, I.C.1
Belyaev, N.D.2
Bruce, A.W.3
Jones, C.4
Mistry, M.5
-
42
-
-
0037444555
-
Ischemic insults derepress the gene silencer REST in neurons destined to die
-
Calderone A, Jover T, Noh K, Tanaka H, Yokota H, et al. (2003) Ischemic insults derepress the gene silencer REST in neurons destined to die. Journal of Neuroscience 23: 2112.
-
(2003)
Journal of Neuroscience
, vol.23
, pp. 2112
-
-
Calderone, A.1
Jover, T.2
Noh, K.3
Tanaka, H.4
Yokota, H.5
-
43
-
-
0032519868
-
Neuronal Expression of Zinc Finger Transcription Factor REST/NRSF/XBR Gene
-
Palm K, Belluardo N, Metsis M, Timmusk Tõnis, (1998) Neuronal Expression of Zinc Finger Transcription Factor REST/NRSF/XBR Gene. J Neurosci 18: 1280-1296.
-
(1998)
J Neurosci
, vol.18
, pp. 1280-1296
-
-
Palm, K.1
Belluardo, N.2
Metsis, M.3
Timmusk, T.4
-
44
-
-
0032846641
-
Neuron-specific splicing of zinc finger transcription factor REST/NRSF/XBR is frequent in neuroblastomas and conserved in human, mouse and rat
-
Palm K, Metsis M, Timmusk T, (1999) Neuron-specific splicing of zinc finger transcription factor REST/NRSF/XBR is frequent in neuroblastomas and conserved in human, mouse and rat. Brain Res Mol Brain Res 72: 30-39.
-
(1999)
Brain Res Mol Brain Res
, vol.72
, pp. 30-39
-
-
Palm, K.1
Metsis, M.2
Timmusk, T.3
-
45
-
-
79953699973
-
seqMINER: an integrated ChIP-seq data interpretation platform
-
doi: 10.1093/nar/gkq1287
-
Ye T, Krebs AR, Choukrallah M-A, Keime C, Plewniak F, et al. (2011) seqMINER: an integrated ChIP-seq data interpretation platform. Nucl Acids Res 39: e35-e35 doi:10.1093/nar/gkq1287.
-
(2011)
Nucl Acids Res
, vol.39
-
-
Ye, T.1
Krebs, A.R.2
Choukrallah, M.-A.3
Keime, C.4
Plewniak, F.5
-
46
-
-
84865856641
-
Sequence and chromatin determinants of cell-type-specific transcription factor binding
-
doi: 10.1101/gr.127712.111
-
Arvey A, Agius P, Noble WS, Leslie C, (2012) Sequence and chromatin determinants of cell-type-specific transcription factor binding. Genome Res 22: 1723-1734 doi:10.1101/gr.127712.111.
-
(2012)
Genome Res
, vol.22
, pp. 1723-1734
-
-
Arvey, A.1
Agius, P.2
Noble, W.S.3
Leslie, C.4
-
47
-
-
0041353535
-
Huntingtin interacts with REST/NRSF to modulate the transcription of NRSE-controlled neuronal genes
-
Zuccato C, Tartari M, Crotti A, Goffredo D, Valenza M, et al. (2003) Huntingtin interacts with REST/NRSF to modulate the transcription of NRSE-controlled neuronal genes. Nature genetics 35: 76-83.
-
(2003)
Nature Genetics
, vol.35
, pp. 76-83
-
-
Zuccato, C.1
Tartari, M.2
Crotti, A.3
Goffredo, D.4
Valenza, M.5
-
48
-
-
19344378337
-
REST and Its Corepressors Mediate Plasticity of Neuronal Gene Chromatin throughout Neurogenesis
-
Ballas N, Grunseich C, Lu DD, Speh JC, Mandel G, (2005) REST and Its Corepressors Mediate Plasticity of Neuronal Gene Chromatin throughout Neurogenesis. Cell 121: 645-657.
-
(2005)
Cell
, vol.121
, pp. 645-657
-
-
Ballas, N.1
Grunseich, C.2
Lu, D.D.3
Speh, J.C.4
Mandel, G.5
-
49
-
-
0030824576
-
Tissue-specific expression of the L1 cell adhesion molecule is modulated by the neural restrictive silencer element
-
Kallunki P, Edelman GM, Jones FS, (1997) Tissue-specific expression of the L1 cell adhesion molecule is modulated by the neural restrictive silencer element. J Cell Biol 138: 1343-1354.
-
(1997)
J Cell Biol
, vol.138
, pp. 1343-1354
-
-
Kallunki, P.1
Edelman, G.M.2
Jones, F.S.3
-
50
-
-
0030451494
-
Cell type-specific regulation of choline acetyltransferase gene expression. Role of the neuron-restrictive silencer element and cholinergic-specific enhancer sequences
-
Lönnerberg P, Schoenherr CJ, Anderson DJ, Ibáñez CF, (1996) Cell type-specific regulation of choline acetyltransferase gene expression. Role of the neuron-restrictive silencer element and cholinergic-specific enhancer sequences. J Biol Chem 271: 33358-33365.
-
(1996)
J Biol Chem
, vol.271
, pp. 33358-33365
-
-
Lönnerberg, P.1
Schoenherr, C.J.2
Anderson, D.J.3
Ibáñez, C.F.4
-
51
-
-
0032171567
-
Transcriptional regulation of the GluR2 gene: neural-specific expression, multiple promoters, and regulatory elements
-
Myers SJ, Peters J, Huang Y, Comer MB, Barthel F, et al. (1998) Transcriptional regulation of the GluR2 gene: neural-specific expression, multiple promoters, and regulatory elements. J Neurosci 18: 6723-6739.
-
(1998)
J Neurosci
, vol.18
, pp. 6723-6739
-
-
Myers, S.J.1
Peters, J.2
Huang, Y.3
Comer, M.B.4
Barthel, F.5
-
52
-
-
0032500537
-
Biological activity and modular structure of RE-1-silencing transcription factor (REST), a repressor of neuronal genes
-
Thiel G, Lietz M, Cramer M, (1998) Biological activity and modular structure of RE-1-silencing transcription factor (REST), a repressor of neuronal genes. J Biol Chem 273: 26891-26899.
-
(1998)
J Biol Chem
, vol.273
, pp. 26891-26899
-
-
Thiel, G.1
Lietz, M.2
Cramer, M.3
-
53
-
-
0029094783
-
Silencer elements modulate the expression of the gene for the neuron-glia cell adhesion molecule, Ng-CAM
-
Kallunki P, Jenkinson S, Edelman GM, Jones FS, (1995) Silencer elements modulate the expression of the gene for the neuron-glia cell adhesion molecule, Ng-CAM. J Biol Chem 270: 21291-21298.
-
(1995)
J Biol Chem
, vol.270
, pp. 21291-21298
-
-
Kallunki, P.1
Jenkinson, S.2
Edelman, G.M.3
Jones, F.S.4
-
54
-
-
0031974927
-
Single-stranded DNA-binding Proteins and Neuron-restrictive Silencer Factor Participate in Cell-specific Transcriptional Control of the NMDAR1 Gene
-
doi: 10.1074/jbc.273.2.1086
-
Bai G, Norton DD, Prenger MS, Kusiak JW, (1998) Single-stranded DNA-binding Proteins and Neuron-restrictive Silencer Factor Participate in Cell-specific Transcriptional Control of the NMDAR1 Gene. J Biol Chem 273: 1086-1091 doi:10.1074/jbc.273.2.1086.
-
(1998)
J Biol Chem
, vol.273
, pp. 1086-1091
-
-
Bai, G.1
Norton, D.D.2
Prenger, M.S.3
Kusiak, J.W.4
-
55
-
-
27844602069
-
Cell type-specific regulation of RE-1 silencing transcription factor (REST) target genes
-
doi: 10.1111/j.1460-9568.2005.04404.x
-
Hohl M, Thiel G, (2005) Cell type-specific regulation of RE-1 silencing transcription factor (REST) target genes. Eur J Neurosci 22: 2216-2230 doi:10.1111/j.1460-9568.2005.04404.x.
-
(2005)
Eur J Neurosci
, vol.22
, pp. 2216-2230
-
-
Hohl, M.1
Thiel, G.2
-
56
-
-
0037217563
-
RE-1 silencing transcription factor (REST) regulates human synaptophysin gene transcription through an intronic sequence-specific DNA-binding site
-
Lietz M, Hohl M, Thiel G, (2003) RE-1 silencing transcription factor (REST) regulates human synaptophysin gene transcription through an intronic sequence-specific DNA-binding site. Eur J Biochem 270: 2-9.
-
(2003)
Eur J Biochem
, vol.270
, pp. 2-9
-
-
Lietz, M.1
Hohl, M.2
Thiel, G.3
-
57
-
-
71949114859
-
Genome-wide identification of target genes repressed by the zinc finger transcription factor REST/NRSF in the HEK 293 cell line
-
doi: 10.1093/abbs/gmp095
-
Liu Z, Liu M, Niu G, Cheng Y, Fei J, (2009) Genome-wide identification of target genes repressed by the zinc finger transcription factor REST/NRSF in the HEK 293 cell line. Acta Biochim Biophys Sin 41: 1008-1017 doi:10.1093/abbs/gmp095.
-
(2009)
Acta Biochim Biophys Sin
, vol.41
, pp. 1008-1017
-
-
Liu, Z.1
Liu, M.2
Niu, G.3
Cheng, Y.4
Fei, J.5
-
58
-
-
0029144854
-
Laminin-5 Is a Marker of Invading Cancer Cells in Some Human Carcinomas and Is Coexpressed with the Receptor for Urokinase Plasminogen Activator in Budding Cancer Cells in Colon Adenocarcinomas
-
Pyke C, Salo S, Ralfkiær E, Rømer J, Danø K, et al. (1995) Laminin-5 Is a Marker of Invading Cancer Cells in Some Human Carcinomas and Is Coexpressed with the Receptor for Urokinase Plasminogen Activator in Budding Cancer Cells in Colon Adenocarcinomas. Cancer Res 55: 4132-4139.
-
(1995)
Cancer Res
, vol.55
, pp. 4132-4139
-
-
Pyke, C.1
Salo, S.2
Ralfkiær, E.3
Rømer, J.4
Danø, K.5
-
59
-
-
1242316335
-
Aberrant expression of interleukin-7 (IL-7) and its signalling complex in human breast cancer
-
doi: 10.1016/j.ejca.2003.10.016
-
Al-Rawi MAA, Rmali K, Watkins G, Mansel RE, Jiang WG, (2004) Aberrant expression of interleukin-7 (IL-7) and its signalling complex in human breast cancer. European Journal of Cancer 40: 494-502 doi:10.1016/j.ejca.2003.10.016.
-
(2004)
European Journal of Cancer
, vol.40
, pp. 494-502
-
-
Al-Rawi, M.A.A.1
Rmali, K.2
Watkins, G.3
Mansel, R.E.4
Jiang, W.G.5
-
60
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL, (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
61
-
-
4644252538
-
One Nucleotide in a κB Site Can Determine Cofactor Specificity for NF-κB Dimers
-
doi: 10.1016/j.cell.2004.08.007
-
Leung TH, Hoffmann A, Baltimore D, (2004) One Nucleotide in a κB Site Can Determine Cofactor Specificity for NF-κB Dimers. Cell 118: 453-464 doi:10.1016/j.cell.2004.08.007.
-
(2004)
Cell
, vol.118
, pp. 453-464
-
-
Leung, T.H.1
Hoffmann, A.2
Baltimore, D.3
-
62
-
-
0036185782
-
Allosteric Regulation of Estrogen Receptor Structure, Function, and Coactivator Recruitment by Different Estrogen Response Elements
-
doi: 10.1210/me.16.3.469
-
Hall JM, McDonnell DP, Korach KS, (2002) Allosteric Regulation of Estrogen Receptor Structure, Function, and Coactivator Recruitment by Different Estrogen Response Elements. Molecular Endocrinology 16: 469-486 doi:10.1210/me.16.3.469.
-
(2002)
Molecular Endocrinology
, vol.16
, pp. 469-486
-
-
Hall, J.M.1
McDonnell, D.P.2
Korach, K.S.3
-
63
-
-
65249167505
-
DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity
-
doi: 10.1126/science.1164265
-
Meijsing SH, Pufall MA, So AY, Bates DL, Chen L, et al. (2009) DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity. Science 324: 407-410 doi:10.1126/science.1164265.
-
(2009)
Science
, vol.324
, pp. 407-410
-
-
Meijsing, S.H.1
Pufall, M.A.2
So, A.Y.3
Bates, D.L.4
Chen, L.5
-
64
-
-
58949097528
-
Ligand-selective transactivation and transrepression via the glucocorticoid receptor: Role of cofactor interaction
-
doi: 10.1016/j.mce.2008.10.008
-
Ronacher K, Hadley K, Avenant C, Stubsrud E, Simons SS Jr, et al. (2009) Ligand-selective transactivation and transrepression via the glucocorticoid receptor: Role of cofactor interaction. Molecular and Cellular Endocrinology 299: 219-231 doi:10.1016/j.mce.2008.10.008.
-
(2009)
Molecular and Cellular Endocrinology
, vol.299
, pp. 219-231
-
-
Ronacher, K.1
Hadley, K.2
Avenant, C.3
Stubsrud, E.4
Simons Jr., S.S.5
-
65
-
-
84865852567
-
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
-
doi: 10.1101/gr.139105.112
-
Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, et al. (2012) Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Genome Res 22: 1798-1812 doi:10.1101/gr.139105.112.
-
(2012)
Genome Res
, vol.22
, pp. 1798-1812
-
-
Wang, J.1
Zhuang, J.2
Iyer, S.3
Lin, X.4
Whitfield, T.W.5
-
66
-
-
84865777820
-
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
-
doi: 10.1101/gr.136366.111
-
Kundaje A, Kyriazopoulou-Panagiotopoulou S, Libbrecht M, Smith CL, Raha D, et al. (2012) Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements. Genome Res 22: 1735-1747 doi:10.1101/gr.136366.111.
-
(2012)
Genome Res
, vol.22
, pp. 1735-1747
-
-
Kundaje, A.1
Kyriazopoulou-Panagiotopoulou, S.2
Libbrecht, M.3
Smith, C.L.4
Raha, D.5
-
67
-
-
77956830750
-
Emphasizing the positive: A role for histone deacetylases in transcriptional activation
-
Dovey OM, Foster CT, Cowley SM, (2010) Emphasizing the positive: A role for histone deacetylases in transcriptional activation. Cell Cycle 9: 2700-2701.
-
(2010)
Cell Cycle
, vol.9
, pp. 2700-2701
-
-
Dovey, O.M.1
Foster, C.T.2
Cowley, S.M.3
-
68
-
-
84873310426
-
Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues
-
doi: 10.1016/j.cell.2012.12.033
-
Zhu J, Adli M, Zou JY, Verstappen G, Coyne M, et al. (2013) Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues. Cell 152: 642-654 doi:10.1016/j.cell.2012.12.033.
-
(2013)
Cell
, vol.152
, pp. 642-654
-
-
Zhu, J.1
Adli, M.2
Zou, J.Y.3
Verstappen, G.4
Coyne, M.5
-
69
-
-
84870182699
-
Noncoding Transcription at Enhancers: General Principles and Functional Models
-
doi: 10.1146/annurev-genet-110711-155459
-
Natoli G, Andrau J-C, (2012) Noncoding Transcription at Enhancers: General Principles and Functional Models. Annual Review of Genetics 46: 1-19 doi:10.1146/annurev-genet-110711-155459.
-
(2012)
Annual Review of Genetics
, vol.46
, pp. 1-19
-
-
Natoli, G.1
Andrau, J.-C.2
-
70
-
-
46649093597
-
Induced ncRNAs Allosterically Modify RNA Binding Proteins in cis to Inhibit Transcription
-
doi: 10.1038/nature06992
-
Wang X, Arai S, Song X, Reichart D, Du K, et al. (2008) Induced ncRNAs Allosterically Modify RNA Binding Proteins in cis to Inhibit Transcription. Nature 454: 126-130 doi:10.1038/nature06992.
-
(2008)
Nature
, vol.454
, pp. 126-130
-
-
Wang, X.1
Arai, S.2
Song, X.3
Reichart, D.4
Du, K.5
-
71
-
-
1642603947
-
A Small Modulatory dsRNA Specifies the Fate of Adult Neural Stem Cells
-
Kuwabara T, Hsieh J, Nakashima K, Taira K, Gage FH, (2004) A Small Modulatory dsRNA Specifies the Fate of Adult Neural Stem Cells. Cell 116: 779-793.
-
(2004)
Cell
, vol.116
, pp. 779-793
-
-
Kuwabara, T.1
Hsieh, J.2
Nakashima, K.3
Taira, K.4
Gage, F.H.5
-
72
-
-
84865757142
-
Landscape of transcription in human cells
-
doi: 10.1038/nature11233
-
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, et al. (2012) Landscape of transcription in human cells. Nature 489: 101-108 doi:10.1038/nature11233.
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
-
74
-
-
33750432857
-
Comparative sequence analysis reveals an intricate network among REST, CREB and miRNA in mediating neuronal gene expression
-
doi: 10.1186/gb-2006-7-9-r85
-
Wu J, Xie X, (2006) Comparative sequence analysis reveals an intricate network among REST, CREB and miRNA in mediating neuronal gene expression. Genome Biology 7: R85 doi:10.1186/gb-2006-7-9-r85.
-
(2006)
Genome Biology
, vol.7
-
-
Wu, J.1
Xie, X.2
-
75
-
-
58149375393
-
The Bifunctional microRNA miR-9/miR-9* Regulates REST and CoREST and Is Downregulated in Huntington's Disease
-
doi: 10.1523/JNEUROSCI.2390-08.2008
-
Packer AN, Xing Y, Harper SQ, Jones L, Davidson BL, (2008) The Bifunctional microRNA miR-9/miR-9* Regulates REST and CoREST and Is Downregulated in Huntington's Disease. J Neurosci 28: 14341-14346 doi:10.1523/JNEUROSCI.2390-08.2008.
-
(2008)
J Neurosci
, vol.28
, pp. 14341-14346
-
-
Packer, A.N.1
Xing, Y.2
Harper, S.Q.3
Jones, L.4
Davidson, B.L.5
-
76
-
-
78649832226
-
A minicircuitry involving REST and CREB controls miR-9-2 expression during human neuronal differentiation
-
doi: 10.1093/nar/gkq604
-
Laneve P, Gioia U, Andriotto A, Moretti F, Bozzoni I, et al. (2010) A minicircuitry involving REST and CREB controls miR-9-2 expression during human neuronal differentiation. Nucl Acids Res 38: 6895-6905 doi:10.1093/nar/gkq604.
-
(2010)
Nucl Acids Res
, vol.38
, pp. 6895-6905
-
-
Laneve, P.1
Gioia, U.2
Andriotto, A.3
Moretti, F.4
Bozzoni, I.5
-
77
-
-
67949083572
-
MicroRNA-mediated switching of chromatin-remodelling complexes in neural development
-
doi: 10.1038/nature08139
-
Yoo AS, Staahl BT, Chen L, Crabtree GR, (2009) MicroRNA-mediated switching of chromatin-remodelling complexes in neural development. Nature 460: 642-646 doi:10.1038/nature08139.
-
(2009)
Nature
, vol.460
, pp. 642-646
-
-
Yoo, A.S.1
Staahl, B.T.2
Chen, L.3
Crabtree, G.R.4
-
78
-
-
34249819336
-
MicroRNA-Mediated Feedback and Feedforward Loops Are Recurrent Network Motifs in Mammals
-
doi: 10.1016/j.molcel.2007.05.018
-
Tsang J, Zhu J, van Oudenaarden A, (2007) MicroRNA-Mediated Feedback and Feedforward Loops Are Recurrent Network Motifs in Mammals. Molecular Cell 26: 753-767 doi:10.1016/j.molcel.2007.05.018.
-
(2007)
Molecular Cell
, vol.26
, pp. 753-767
-
-
Tsang, J.1
Zhu, J.2
van Oudenaarden, A.3
-
79
-
-
33144481470
-
Reciprocal actions of REST and a microRNA promote neuronal identity
-
doi: 10.1073/pnas.0511041103
-
Conaco C, Otto S, Han J-J, Mandel G, (2006) Reciprocal actions of REST and a microRNA promote neuronal identity. PNAS 103: 2422-2427 doi:10.1073/pnas.0511041103.
-
(2006)
PNAS
, vol.103
, pp. 2422-2427
-
-
Conaco, C.1
Otto, S.2
Han, J.-J.3
Mandel, G.4
-
80
-
-
84862174920
-
miR-212/132 expression and functions: within and beyond the neuronal compartment
-
Wanet A, Tacheny A, Arnould T, Renard P, (2012) miR-212/132 expression and functions: within and beyond the neuronal compartment. Nucl Acids Res 40 (11) (): 4742-53 Available: http://nar.oxfordjournals.org/content/early/2012/02/21/nar.gks151. Accessed 19 June 2013.
-
(2012)
Nucl Acids Res
, vol.40
, Issue.11
, pp. 4742-4753
-
-
Wanet, A.1
Tacheny, A.2
Arnould, T.3
Renard, P.4
-
81
-
-
84862159614
-
Profiling of REST-Dependent microRNAs Reveals Dynamic Modes of Expression
-
doi: 10.3389/fnins.2012.00067
-
Gao Z, Ding P, Hsieh J, (2012) Profiling of REST-Dependent microRNAs Reveals Dynamic Modes of Expression. Front Neurosci 6: 67 doi:10.3389/fnins.2012.00067.
-
(2012)
Front Neurosci
, vol.6
, pp. 67
-
-
Gao, Z.1
Ding, P.2
Hsieh, J.3
-
82
-
-
84881579993
-
In vitro-differentiated neural cell cultures progress towards donor-identical brain tissue
-
doi: 10.1093/hmg/ddt208
-
Hjelm BE, Salhia B, Kurdoglu A, Szelinger S, Reiman RA, et al. (2013) In vitro-differentiated neural cell cultures progress towards donor-identical brain tissue. Hum Mol Genet 22: 3534-3546 doi:10.1093/hmg/ddt208.
-
(2013)
Hum Mol Genet
, vol.22
, pp. 3534-3546
-
-
Hjelm, B.E.1
Salhia, B.2
Kurdoglu, A.3
Szelinger, S.4
Reiman, R.A.5
-
83
-
-
84903395768
-
-
R&D Systems Available:. Accessed 29 October 2013
-
R&D Systems (2013) Neural Stem Cells & Differentiation Markers. Available: http://www.rndsystems.com/Resources/Images/20702.pdf. Accessed 29 October 2013.
-
(2013)
Neural Stem Cells & Differentiation Markers
-
-
-
84
-
-
84897386660
-
REST and stress resistance in ageing and Alzheimer/'s disease
-
Lu T, Aron L, Zullo J, Pan Y, Kim H, et al. (2014) REST and stress resistance in ageing and Alzheimer/'s disease. Nature 507 (7493) (): 448-54 Available: http://www.nature.com/nature/journal/vaop/ncurrent/full/nature13163.html. Accessed 26 March 2014.
-
(2014)
Nature
, vol.507
, Issue.7493
, pp. 448-454
-
-
Lu, T.1
Aron, L.2
Zullo, J.3
Pan, Y.4
Kim, H.5
-
85
-
-
69449093703
-
Regulation of vertebrate nervous system alternative splicing and development by an SR-related protein
-
doi: 10.1016/j.cell.2009.06.012
-
Calarco JA, Superina S, O'Hanlon D, Gabut M, Raj B, et al. (2009) Regulation of vertebrate nervous system alternative splicing and development by an SR-related protein. Cell 138: 898-910 doi:10.1016/j.cell.2009.06.012.
-
(2009)
Cell
, vol.138
, pp. 898-910
-
-
Calarco, J.A.1
Superina, S.2
O'Hanlon, D.3
Gabut, M.4
Raj, B.5
-
86
-
-
84865773113
-
Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3
-
doi: 10.1186/gb-2012-13-9-r52
-
Frietze S, Wang R, Yao L, Tak YG, Ye Z, et al. (2012) Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3. Genome Biol 13: R52 doi:10.1186/gb-2012-13-9-r52.
-
(2012)
Genome Biol
, vol.13
-
-
Frietze, S.1
Wang, R.2
Yao, L.3
Tak, Y.G.4
Ye, Z.5
-
87
-
-
0347719238
-
Expression and function of orphan nuclear receptor TLX in adult neural stem cells
-
doi: 10.1038/nature02211
-
Shi Y, Chichung Lie D, Taupin P, Nakashima K, Ray J, et al. (2004) Expression and function of orphan nuclear receptor TLX in adult neural stem cells. Nature 427: 78-83 doi:10.1038/nature02211.
-
(2004)
Nature
, vol.427
, pp. 78-83
-
-
Shi, Y.1
Chichung Lie, D.2
Taupin, P.3
Nakashima, K.4
Ray, J.5
-
88
-
-
84864304495
-
MicroRNA-9 Modulates Hes1 Ultradian Oscillations by Forming a Double-Negative Feedback Loop
-
doi: 10.1016/j.celrep.2012.05.017
-
Bonev B, Stanley P, Papalopulu N, (2012) MicroRNA-9 Modulates Hes1 Ultradian Oscillations by Forming a Double-Negative Feedback Loop. Cell Reports 2: 10-18 doi:10.1016/j.celrep.2012.05.017.
-
(2012)
Cell Reports
, vol.2
, pp. 10-18
-
-
Bonev, B.1
Stanley, P.2
Papalopulu, N.3
-
89
-
-
44249090065
-
Roles of Hes genes in neural development
-
doi: 10.1111/j.1440-169X.2008.00993.x
-
Kageyama R, Ohtsuka T, Kobayashi T, (2008) Roles of Hes genes in neural development. Dev Growth Differ 50 Suppl 1: S97-103 doi:10.1111/j.1440-169X.2008.00993.x.
-
(2008)
Dev Growth Differ
, vol.50
, Issue.SUPPL. 1
, pp. 97-103
-
-
Kageyama, R.1
Ohtsuka, T.2
Kobayashi, T.3
-
90
-
-
61849144426
-
Bmi-1 cooperates with Foxg1 to maintain neural stem cell self-renewal in the forebrain
-
doi: 10.1101/gad.1743709
-
Fasano CA, Phoenix TN, Kokovay E, Lowry N, Elkabetz Y, et al. (2009) Bmi-1 cooperates with Foxg1 to maintain neural stem cell self-renewal in the forebrain. Genes Dev 23: 561-574 doi:10.1101/gad.1743709.
-
(2009)
Genes Dev
, vol.23
, pp. 561-574
-
-
Fasano, C.A.1
Phoenix, T.N.2
Kokovay, E.3
Lowry, N.4
Elkabetz, Y.5
-
91
-
-
0345824722
-
Foxg1 Suppresses Early Cortical Cell Fate
-
doi: 10.1126/science.1090674
-
Hanashima C, Li SC, Shen L, Lai E, Fishell G, (2004) Foxg1 Suppresses Early Cortical Cell Fate. Science 303: 56-59 doi:10.1126/science.1090674.
-
(2004)
Science
, vol.303
, pp. 56-59
-
-
Hanashima, C.1
Li, S.C.2
Shen, L.3
Lai, E.4
Fishell, G.5
-
92
-
-
77649162059
-
Direct conversion of fibroblasts to functional neurons by defined factors
-
doi: 10.1038/nature08797
-
Vierbuchen T, Ostermeier A, Pang ZP, Kokubu Y, Südhof TC, et al. (2010) Direct conversion of fibroblasts to functional neurons by defined factors. Nature 463: 1035-1041 doi:10.1038/nature08797.
-
(2010)
Nature
, vol.463
, pp. 1035-1041
-
-
Vierbuchen, T.1
Ostermeier, A.2
Pang, Z.P.3
Kokubu, Y.4
Südhof, T.C.5
-
93
-
-
80051684096
-
MicroRNA-mediated conversion of human fibroblasts to neurons
-
doi: 10.1038/nature10323
-
Yoo AS, Sun AX, Li L, Shcheglovitov A, Portmann T, et al. (2011) MicroRNA-mediated conversion of human fibroblasts to neurons. Nature 476: 228-231 doi:10.1038/nature10323.
-
(2011)
Nature
, vol.476
, pp. 228-231
-
-
Yoo, A.S.1
Sun, A.X.2
Li, L.3
Shcheglovitov, A.4
Portmann, T.5
-
94
-
-
0036428761
-
Negative autoregulation speeds the response times of transcription networks
-
Rosenfeld N, Elowitz MB, Alon U, (2002) Negative autoregulation speeds the response times of transcription networks. Journal of molecular biology 323: 785-793.
-
(2002)
Journal of Molecular Biology
, vol.323
, pp. 785-793
-
-
Rosenfeld, N.1
Elowitz, M.B.2
Alon, U.3
-
95
-
-
84878790595
-
A Genome-Wide Screen of CREB Occupancy Identifies the RhoA Inhibitors Par6C and Rnd3 as Regulators of BDNF-Induced Synaptogenesis
-
doi: 10.1371/journal.pone.0064658
-
Lesiak A, Pelz C, Ando H, Zhu M, Davare M, et al. (2013) A Genome-Wide Screen of CREB Occupancy Identifies the RhoA Inhibitors Par6C and Rnd3 as Regulators of BDNF-Induced Synaptogenesis. PLoS ONE 8: e64658 doi:10.1371/journal.pone.0064658.
-
(2013)
PLoS ONE
, vol.8
-
-
Lesiak, A.1
Pelz, C.2
Ando, H.3
Zhu, M.4
Davare, M.5
-
96
-
-
80052298366
-
Genome-wide Maps of Histone Modifications Unwind In Vivo Chromatin States of the Hair Follicle Lineage
-
doi: 10.1016/j.stem.2011.07.015
-
Lien W-H, Guo X, Polak L, Lawton LN, Young RA, et al. (2011) Genome-wide Maps of Histone Modifications Unwind In Vivo Chromatin States of the Hair Follicle Lineage. Cell Stem Cell 9: 219-232 doi:10.1016/j.stem.2011.07.015.
-
(2011)
Cell Stem Cell
, vol.9
, pp. 219-232
-
-
Lien, W.-H.1
Guo, X.2
Polak, L.3
Lawton, L.N.4
Young, R.A.5
-
97
-
-
34249026300
-
High-Resolution Profiling of Histone Methylations in the Human Genome
-
Barski A, Cuddapah S, Cui K, Roh T-Y, Schones DE, et al. (2007) High-Resolution Profiling of Histone Methylations in the Human Genome. Cell 129: 823-837.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.-Y.4
Schones, D.E.5
-
98
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg S, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10: R25.
-
(2009)
Genome Biology
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.4
-
99
-
-
79955564639
-
Measuring reproducibility of high-throughput experiments
-
doi: 10.1214/11-AOAS466
-
Li Q, Brown JB, Huang H, Bickel PJ, (2011) Measuring reproducibility of high-throughput experiments. Ann Appl Stat 5: 1752-1779 doi:10.1214/11-AOAS466.
-
(2011)
Ann Appl Stat
, vol.5
, pp. 1752-1779
-
-
Li, Q.1
Brown, J.B.2
Huang, H.3
Bickel, P.J.4
-
100
-
-
80052784383
-
Development of patient-specific neurons in schizophrenia using induced pluripotent stem cells
-
doi: 10.3109/01677063.2011.597908
-
Pedrosa E, Sandler V, Shah A, Carroll R, Chang C, et al. (2011) Development of patient-specific neurons in schizophrenia using induced pluripotent stem cells. J Neurogenet 25: 88-103 doi:10.3109/01677063.2011.597908.
-
(2011)
J Neurogenet
, vol.25
, pp. 88-103
-
-
Pedrosa, E.1
Sandler, V.2
Shah, A.3
Carroll, R.4
Chang, C.5
-
101
-
-
80052536392
-
RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders
-
doi: 10.1371/journal.pone.0023356
-
Lin M, Pedrosa E, Shah A, Hrabovsky A, Maqbool S, et al. (2011) RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders. PLoS ONE 6: e23356 doi:10.1371/journal.pone.0023356.
-
(2011)
PLoS ONE
, vol.6
-
-
Lin, M.1
Pedrosa, E.2
Shah, A.3
Hrabovsky, A.4
Maqbool, S.5
-
102
-
-
80051941094
-
Identification of novel transcripts in annotated genomes using RNA-Seq
-
Roberts A, Pimentel H, Trapnell C, Pachter L, (2011) Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics 27 (17) (): 2325-9 Available: http://bioinformatics.oxfordjournals.org/content/early/2011/06/21/bioinformatics.btr355.abstract. Accessed 12 October 2011.
-
(2011)
Bioinformatics
, vol.27
, Issue.17
, pp. 2325-2329
-
-
Roberts, A.1
Pimentel, H.2
Trapnell, C.3
Pachter, L.4
-
103
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
doi: 10.1038/nmeth.1923
-
Langmead B, Salzberg SL, (2012) Fast gapped-read alignment with Bowtie 2. Nat Meth 9: 357-359 doi:10.1038/nmeth.1923.
-
(2012)
Nat Meth
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
105
-
-
78650575601
-
-
Available:. Accessed 25 July 2013
-
Warnes GR, Bolker B, Bonebakker L, Gentleman R, Liaw WHA,et al. (2013) gplots: Various R programming tools for plotting data. Available: http://cran.r-project.org/web/packages/gplots/index.html. Accessed 25 July 2013.
-
(2013)
Gplots: Various R programming tools for plotting data
-
-
Warnes, G.R.1
Bolker, B.2
Bonebakker, L.3
Gentleman, R.4
Liaw, W.H.A.5
|