-
1
-
-
84901458872
-
Applications of the Coalescent Process to Problems in Population-Genetics
-
Hudson RR, Kaplan NL (1987) Applications of the Coalescent Process to Problems in Population-Genetics. Environ Health Persp 75: 126-127.
-
(1987)
Environ Health Persp
, vol.75
, pp. 126-127
-
-
Hudson, R.R.1
Kaplan, N.L.2
-
2
-
-
0036964474
-
Approximate Bayesian computation in population genetics
-
Beaumont MA, Zhang W, Balding DJ (2002) Approximate Bayesian computation in population genetics. Genetics 162(4): 2025-2035. (Pubitemid 36114682)
-
(2002)
Genetics
, vol.162
, Issue.4
, pp. 2025-2035
-
-
Beaumont, M.A.1
Zhang, W.2
Balding, D.J.3
-
3
-
-
79956314887
-
Genotype and SNP calling from next-generation sequencing data
-
Nielsen R, Paul JS, Albrechtsen A, Song YS (2011) Genotype and SNP calling from next-generation sequencing data. Nat Rev Genet 12(6): 443-451.
-
(2011)
Nat Rev Genet
, vol.12
, Issue.6
, pp. 443-451
-
-
Nielsen, R.1
Paul, J.S.2
Albrechtsen, A.3
Song, Y.S.4
-
5
-
-
0033199777
-
Bayesian statistics in genetics: A guide for the uninitiated
-
DOI 10.1016/S0168-9525(99)01751-5, PII S0168952599017515
-
Shoemaker JS, Painter IS, Weir BS (1999) Bayesian statistics in genetics - a guide for the uninitiated. Trends in Genetics 15(9): 354-358. (Pubitemid 29417589)
-
(1999)
Trends in Genetics
, vol.15
, Issue.9
, pp. 354-358
-
-
Shoemaker, J.S.1
Painter, I.S.2
Weir, B.S.3
-
6
-
-
1842532350
-
The bayesian revolution in genetics
-
DOI 10.1038/nrg1318
-
Beaumont MA, Rannala B (2004) The Bayesian revolution in genetics. Nat Rev Genet 5(4): 251-261. (Pubitemid 38435621)
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.4
, pp. 251-261
-
-
Beaumont, M.A.1
Rannala, B.2
-
7
-
-
84858767588
-
A tutorial on approximate Bayesian computation
-
Turner BM, Van Zandt T (2012) A tutorial on approximate Bayesian computation. J Math Psychol 56(2): 69-85.
-
(2012)
J Math Psychol
, vol.56
, Issue.2
, pp. 69-85
-
-
Turner, B.M.1
Van Zandt, T.2
-
8
-
-
53649088131
-
Applications of next-generation sequencing technologies in functional genomics
-
Morozova O, Marra MA (2008) Applications of next-generation sequencing technologies in functional genomics. Genomics 92(5): 255-264.
-
(2008)
Genomics
, vol.92
, Issue.5
, pp. 255-264
-
-
Morozova, O.1
Marra, M.A.2
-
9
-
-
77952136530
-
A Draft Sequence of the Neandertal Genome
-
Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, et al. (2010) A Draft Sequence of the Neandertal Genome. Science 328(5979): 710-722.
-
(2010)
Science
, vol.328
, Issue.5979
, pp. 710-722
-
-
Green, R.E.1
Krause, J.2
Briggs, A.W.3
Maricic, T.4
Stenzel, U.5
-
10
-
-
10844288101
-
Studying the effect of environmental change on biotic evolution: Past genetic contributions, current work and future directions
-
Van Tuinen M, Ramakrishnan U, Hadly EA (2004) Studying the effect of environmental change on biotic evolution: past genetic contributions, current work and future directions. Philos T Roy Soc A 362(1825): 2795-2820.
-
(2004)
Philos T Roy Soc A
, vol.362
, Issue.1825
, pp. 2795-2820
-
-
Van Tuinen, M.1
Ramakrishnan, U.2
Hadly, E.A.3
-
11
-
-
62849103887
-
Using phylochronology to reveal cryptic population histories: Review and synthesis of 29 ancient DNA studies
-
Ramakrishnan U, Hadly EA (2009) Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies. Mol Ecol 18(7): 1310-1330.
-
(2009)
Mol Ecol
, vol.18
, Issue.7
, pp. 1310-1330
-
-
Ramakrishnan, U.1
Hadly, E.A.2
-
12
-
-
78149388939
-
Approximate Bayesian Computation in Evolution and Ecology
-
Beaumont MA (2010) Approximate Bayesian Computation in Evolution and Ecology. Annu Rev Ecol Evol S 41: 379-406.
-
(2010)
Annu Rev Ecol Evol S
, vol.41
, pp. 379-406
-
-
Beaumont, M.A.1
-
13
-
-
77954816556
-
Approximate Bayesian Computation (ABC) in practice
-
Csillery K, Blum MGB, Gaggiotti OE, Francois O (2010) Approximate Bayesian Computation (ABC) in practice. Trends Ecol Evol 25(7): 410-418.
-
(2010)
Trends Ecol Evol
, vol.25
, Issue.7
, pp. 410-418
-
-
Csillery, K.1
Blum, M.G.B.2
Gaggiotti, O.E.3
Francois, O.4
-
14
-
-
0346734143
-
Markov chain Monte Carlo without likelihoods
-
DOI 10.1073/pnas.0306899100
-
Marjoram P, Molitor J, Plagnol V, Tavaré S (2003) Markov chain Monte Carlo without likelihoods. P Natl Acad Sci USA 100(26): 15324-15328. (Pubitemid 38020988)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.26
, pp. 15324-15328
-
-
Marjoram, P.1
Molitor, J.2
Plagnol, V.3
Tavare, S.4
-
15
-
-
36749047447
-
Statistical evaluation of alternative models of human evolution
-
DOI 10.1073/pnas.0708280104
-
Fagundes NJR, Ray N, Beaumont M, Neuenschwander S, Salzano FM, et al. (2007) Statistical evaluation of alternative models of human evolution. P Natl Acad Sci USA 104(45): 17614-17619. (Pubitemid 350210884)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.45
, pp. 17614-17619
-
-
Fagundes, N.J.R.1
Ray, N.2
Beaumont, M.3
Neuenschwander, S.4
Salzano, F.M.5
Bonatto, S.L.6
Excoffier, L.7
-
16
-
-
84863561074
-
Resequencing Data Provide No Evidence for a Human Bottleneck in Africa during the Penultimate Glacial Period
-
Sjodin P, Sjostrand AE, Jakobsson M, Blum MGB (2012) Resequencing Data Provide No Evidence for a Human Bottleneck in Africa during the Penultimate Glacial Period. Mol Biol Evol 29(7): 1851-1860.
-
(2012)
Mol Biol Evol
, vol.29
, Issue.7
, pp. 1851-1860
-
-
Sjodin, P.1
Sjostrand, A.E.2
Jakobsson, M.3
Blum, M.G.B.4
-
17
-
-
33748541658
-
Evolution of intrahost HIV-1 genetic diversity during chronic infection
-
DOI 10.1554/05-473.1
-
Shriner D, Liu Y, Nickle DC, Mullins JI (2006) Evolution of intrahost HIV-1 genetic diversity during chronic infection. Evolution 60(6): 1165-1176. (Pubitemid 44804475)
-
(2006)
Evolution
, vol.60
, Issue.6
, pp. 1165-1176
-
-
Shriner, D.1
Liu, Y.2
Nickle, D.C.3
Mullins, J.I.4
-
18
-
-
33746419713
-
Using approximate bayesian computation to estimate tuberculosis transmission parameters from genotype data
-
DOI 10.1534/genetics.106.055574
-
Tanaka MM, Francis AR, Luciani F, Sisson SA (2006) Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data. Genetics 173(3): 1511-1520. (Pubitemid 44127654)
-
(2006)
Genetics
, vol.173
, Issue.3
, pp. 1511-1520
-
-
Tanaka, M.M.1
Francis, A.R.2
Luciani, F.3
Sisson, S.A.4
-
19
-
-
0032735986
-
Population growth of human Y chromosomes: A study of Y chromosome microsatellites
-
Pritchard JK, Seielstad MT, Perez-Lezaun A, Feldman MW (1999) Population growth of human Y chromosomes: A study of Y chromosome microsatellites. Mol Biol Evol, 16(12): 1791-1798.
-
(1999)
Mol Biol Evol
, vol.16
, Issue.12
, pp. 1791-1798
-
-
Pritchard, J.K.1
Seielstad, M.T.2
Perez-Lezaun, A.3
Feldman, M.W.4
-
20
-
-
20444406878
-
Bayesian estimation of recent migration rates after a spatial expansion
-
DOI 10.1534/genetics.104.034199
-
Hamilton G, Currat M, Ray N, Heckel G, Beaumont M, et al. (2005) Bayesian estimation of recent migration rates after a spatial expansion. Genetics 170(1): 409-417. (Pubitemid 40800002)
-
(2005)
Genetics
, vol.170
, Issue.1
, pp. 409-417
-
-
Hamilton, G.1
Currat, M.2
Ray, N.3
Heckel, G.4
Beaumont, M.5
Excoffier, L.6
-
21
-
-
52949128377
-
An Approximate Bayesian Estimator Suggests Strong, Recurrent Selective Sweeps in Drosophila
-
doi:10.1371/journal.pgen.1000198
-
Jensen JD, Thornton KR, Andolfatto P (2008) An Approximate Bayesian Estimator Suggests Strong, Recurrent Selective Sweeps in Drosophila. Plos Genet 4(9): e1000198. doi:10.1371/journal.pgen.1000198.
-
(2008)
Plos Genet
, vol.4
, Issue.9
-
-
Jensen, J.D.1
Thornton, K.R.2
Andolfatto, P.3
-
22
-
-
67650327255
-
Approximate Bayesian computation without summary statistics: The case of admixture
-
Sousa VC, Fritz M, Beaumont MA, Chikhi L (2009) Approximate Bayesian computation without summary statistics: the case of admixture. Genetics 181(4): 1507-1519.
-
(2009)
Genetics
, vol.181
, Issue.4
, pp. 1507-1519
-
-
Sousa, V.C.1
Fritz, M.2
Beaumont, M.A.3
Chikhi, L.4
-
23
-
-
0034491799
-
SIMCOAL: A general coalescent program for the simulation of molecular data in interconnected populations with arbitrary demography
-
Excoffier L, Novembre J, Schneider S (2000) SIMCOAL: A general coalescent program for the simulation of molecular data in interconnected populations with arbitrary demography. J Hered 91(6): 506-509. (Pubitemid 32125471)
-
(2000)
Journal of Heredity
, vol.91
, Issue.6
, pp. 506-509
-
-
Excoffier, L.1
Novembre, J.2
Schneider, S.3
-
24
-
-
80054119460
-
Genetic variation over 10 000 years in Ctenomys: Comparative phylochronology provides a temporal perspective on rarity, environmental change and demography
-
Chan YL, Hadly EA (2011) Genetic variation over 10 000 years in Ctenomys: comparative phylochronology provides a temporal perspective on rarity, environmental change and demography. Mol Ecol 20(22): 4592-4605.
-
(2011)
Mol Ecol
, vol.20
, Issue.22
, pp. 4592-4605
-
-
Chan, Y.L.1
Hadly, E.A.2
-
25
-
-
84867552071
-
The impact of past climate change on genetic variation and population connectivity in the Icelandic arctic fox
-
Mellows A, Barnett R, Dalén L, Sandoval-Castellanos E, Linderholm A, et al. (2012) The impact of past climate change on genetic variation and population connectivity in the Icelandic arctic fox. Proc R Soc B 279: 4568-4573.
-
(2012)
Proc R Soc B
, vol.279
, pp. 4568-4573
-
-
Mellows, A.1
Barnett, R.2
Dalén, L.3
Sandoval-Castellanos, E.4
Linderholm, A.5
-
26
-
-
84863725612
-
Microsatellite genotyping reveals end-Pleistocene decline in mammoth autosomal genetic variation
-
Nystrom V, Humphrey J, Skoglund P, McKeown NJ, Vartanyan S, et al. (2012) Microsatellite genotyping reveals end-Pleistocene decline in mammoth autosomal genetic variation. Mol Ecol 21(14): 3391-3402.
-
(2012)
Mol Ecol
, vol.21
, Issue.14
, pp. 3391-3402
-
-
Nystrom, V.1
Humphrey, J.2
Skoglund, P.3
McKeown, N.J.4
Vartanyan, S.5
-
27
-
-
77954247262
-
ABC as a flexible framework to estimate demography over space and time: Some cons, many pros
-
Bertorelle G, Benazzo A, Mona S (2010) ABC as a flexible framework to estimate demography over space and time: some cons, many pros. Mol Ecol 19(13): 2609-2625.
-
(2010)
Mol Ecol
, vol.19
, Issue.13
, pp. 2609-2625
-
-
Bertorelle, G.1
Benazzo, A.2
Mona, S.3
-
28
-
-
80053069153
-
Lack of confidence in approximate Bayesian computation model choice
-
Robert CP, Cornuet JM, Marin JM, Pillai NS (2011) Lack of confidence in approximate Bayesian computation model choice. P Natl Acad Sci USA 108(37): 15112-15117.
-
(2011)
P Natl Acad Sci USA
, vol.108
, Issue.37
, pp. 15112-15117
-
-
Robert, C.P.1
Cornuet, J.M.2
Marin, J.M.3
Pillai, N.S.4
-
29
-
-
67649819681
-
Model criticism based on likelihood-free inference, with an application to protein network evolution
-
Ratmann O, Andrieu C, Wiuf C, Richardson S (2009) Model criticism based on likelihood-free inference, with an application to protein network evolution. P Natl Acad Sci USA 106(26): 10576-10581.
-
(2009)
P Natl Acad Sci USA
, vol.106
, Issue.26
, pp. 10576-10581
-
-
Ratmann, O.1
Andrieu, C.2
Wiuf, C.3
Richardson, S.4
-
31
-
-
70350136774
-
Efficient approximate Bayesian computation coupled with Markov chain Monte Carlo without likelihood
-
Wegmann D, Leuenberger C, Excoffier L (2009) Efficient approximate Bayesian computation coupled with Markov chain Monte Carlo without likelihood. Genetics 182(4): 1207-1218.
-
(2009)
Genetics
, vol.182
, Issue.4
, pp. 1207-1218
-
-
Wegmann, D.1
Leuenberger, C.2
Excoffier, L.3
-
32
-
-
73549122582
-
Non-linear regression models for Approximate Bayesian Computation
-
Blum MGB, Francois O (2010) Non-linear regression models for Approximate Bayesian Computation. Stat Comput 20(1): 63-73.
-
(2010)
Stat Comput
, vol.20
, Issue.1
, pp. 63-73
-
-
Blum, M.G.B.1
Francois, O.2
-
33
-
-
74249110200
-
Bayesian Computation and Model Selection Without Likelihoods
-
Leuenberger C, Wegmann D (2010) Bayesian Computation and Model Selection Without Likelihoods. Genetics 184(1): 243-252.
-
(2010)
Genetics
, vol.184
, Issue.1
, pp. 243-252
-
-
Leuenberger, C.1
Wegmann, D.2
-
34
-
-
77954487004
-
ABC-SysBioapproximate Bayesian computation in Python with GPU support
-
Liepe J, Barnes C, Cule E, Erguler K, Kirk P, et al. (2010) ABC-SysBioapproximate Bayesian computation in Python with GPU support. Bioinformatics 26(14): 1797-1799.
-
(2010)
Bioinformatics
, vol.26
, Issue.14
, pp. 1797-1799
-
-
Liepe, J.1
Barnes, C.2
Cule, E.3
Erguler, K.4
Kirk, P.5
-
35
-
-
77954035029
-
ABC: A useful Bayesian tool for the analysis of population data
-
Lopes JS, Beaumont MA (2010) ABC: a useful Bayesian tool for the analysis of population data. Infect Genet Evol 10(6): 826-833.
-
(2010)
Infect Genet Evol
, vol.10
, Issue.6
, pp. 826-833
-
-
Lopes, J.S.1
Beaumont, M.A.2
-
37
-
-
84861153207
-
abc: An R package for approximate Bayesian computation (ABC)
-
Csillery K, Francois O, Blum MGB (2012) abc: an R package for approximate Bayesian computation (ABC). Methods Ecol Evol 3(3): 475-479.
-
(2012)
Methods Ecol Evol
, vol.3
, Issue.3
, pp. 475-479
-
-
Csillery, K.1
Francois, O.2
Blum, M.G.B.3
-
38
-
-
84897114016
-
DIYABC v2.0: A software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data
-
Cornuet JM, Pudlo P, Veyssier J, Dehne-Garcia A, Gautier M, et al. (2014) DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data. Bioinformatics 30(8): 1187-1189.
-
(2014)
Bioinformatics
, vol.30
, Issue.8
, pp. 1187-1189
-
-
Cornuet, J.M.1
Pudlo, P.2
Veyssier, J.3
Dehne-Garcia, A.4
Gautier, M.5
-
40
-
-
17444424295
-
Serial SimCoal: A population genetics model for data from multiple populations and points in time
-
DOI 10.1093/bioinformatics/bti154
-
Anderson CNK, Ramakrishnan U, Chan YL, Hadly EA (2005) Serial SimCoal: A population genetics model for data from multiple populations and points in time. Bioinformatics 21(8): 1733-1734. (Pubitemid 40542747)
-
(2005)
Bioinformatics
, vol.21
, Issue.8
, pp. 1733-1734
-
-
Anderson, C.N.K.1
Ramakrishnan, U.2
Chan, Y.L.3
Hadly, E.A.4
-
41
-
-
77953032930
-
Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows
-
Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10: 564-567.
-
(2010)
Mol Ecol Resour
, vol.10
, pp. 564-567
-
-
Excoffier, L.1
Lischer, H.E.L.2
|