메뉴 건너뛰기




Volumn 10, Issue 6, 2010, Pages 825-832

ABC: A useful Bayesian tool for the analysis of population data

Author keywords

Approximate Bayesian computation; Biogeography; Coalescence models; Epidemiology; Likelihood free inference; Phylogenetics; Population genetics; Population history; Population models

Indexed keywords

ALGORITHM; APPROXIMATE BAYESIAN COMPUTATION; ARTICLE; BAYES THEOREM; CALCULATION; CAMPYLOBACTERIOSIS; COMPUTER PROGRAM; DATA ANALYSIS; EPIDEMIOLOGICAL DATA; GENOTYPE; HIERARCHICAL BAYESIAN MODEL; HUMAN; MUTATION RATE; POPULATION GENETICS; POPULATION RESEARCH; PRIORITY JOURNAL; SAMPLING; SIMULATION; STATISTICS; SUMMARY STATISTICS; TUBERCULOSIS;

EID: 77954035029     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2009.10.010     Document Type: Article
Times cited : (37)

References (95)
  • 2
    • 58149282899 scopus 로고    scopus 로고
    • Joint determination of topology, divergence time, and immigration in population trees
    • McDonald Institute for Archaeological Research, Cambridge, S. Matsumura, P. Forster, C. Renfrew (Eds.)
    • Beaumont M. Joint determination of topology, divergence time, and immigration in population trees. Simulations, Genetics, and Human Prehistory 2008, 135-154. McDonald Institute for Archaeological Research, Cambridge. S. Matsumura, P. Forster, C. Renfrew (Eds.).
    • (2008) Simulations, Genetics, and Human Prehistory , pp. 135-154
    • Beaumont, M.1
  • 3
    • 71249121103 scopus 로고    scopus 로고
    • Adaptive approximate Bayesian computation: the ABC-PMC scheme
    • Arxiv preprint arXiv:0805.2256v9
    • Beaumont M., Cornuet J.M., Marin J.M., Robert C.P. Adaptive approximate Bayesian computation: the ABC-PMC scheme. Biometrika 2009, Arxiv preprint arXiv:0805.2256v9.
    • (2009) Biometrika
    • Beaumont, M.1    Cornuet, J.M.2    Marin, J.M.3    Robert, C.P.4
  • 4
    • 0032713236 scopus 로고    scopus 로고
    • Detecting population expansion and decline using microsatellites
    • Beaumont M.A. Detecting population expansion and decline using microsatellites. Genetics 1999, 153:2013-2029.
    • (1999) Genetics , vol.153 , pp. 2013-2029
    • Beaumont, M.A.1
  • 5
    • 0043210659 scopus 로고    scopus 로고
    • Estimation of population growth or decline in genetically monitored populations
    • Beaumont M.A. Estimation of population growth or decline in genetically monitored populations. Genetics 2003, 164:1139-1160.
    • (2003) Genetics , vol.164 , pp. 1139-1160
    • Beaumont, M.A.1
  • 6
    • 1842532350 scopus 로고    scopus 로고
    • The Bayesian revolution in genetics
    • Beaumont M.A., Rannala B. The Bayesian revolution in genetics. Nat. Rev. Genet. 2004, 5:251-261.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 251-261
    • Beaumont, M.A.1    Rannala, B.2
  • 7
    • 0036964474 scopus 로고    scopus 로고
    • Approximate Bayesian computation in population genetics
    • Beaumont M.A., Zhang W., Balding D.J. Approximate Bayesian computation in population genetics. Genetics 2002, 162:2025-2035.
    • (2002) Genetics , vol.162 , pp. 2025-2035
    • Beaumont, M.A.1    Zhang, W.2    Balding, D.J.3
  • 8
    • 73549122582 scopus 로고    scopus 로고
    • Non-linear regression models for approximate Bayesian computation
    • Blum M.G.B., Francois O. Non-linear regression models for approximate Bayesian computation. Stat. Comput. 2009, 10.1007/s11222-009-9116-0.
    • (2009) Stat. Comput.
    • Blum, M.G.B.1    Francois, O.2
  • 10
    • 38849101650 scopus 로고    scopus 로고
    • Origin and number of founders in an introduced insular primate: estimation from nuclear genetic data
    • Bonhomme M., Blancher A., Cuartero S., Chikhi L., Crouau-Roy B. Origin and number of founders in an introduced insular primate: estimation from nuclear genetic data. Mol. Ecol. 2008, 17:1009-1019.
    • (2008) Mol. Ecol. , vol.17 , pp. 1009-1019
    • Bonhomme, M.1    Blancher, A.2    Cuartero, S.3    Chikhi, L.4    Crouau-Roy, B.5
  • 13
    • 33646483919 scopus 로고    scopus 로고
    • Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA
    • Chan Y.L., Anderson C.N.K., Hadly E.A. Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA. PLoS Genet. 2006, 2:59.
    • (2006) PLoS Genet. , vol.2 , pp. 59
    • Chan, Y.L.1    Anderson, C.N.K.2    Hadly, E.A.3
  • 16
    • 0032833648 scopus 로고    scopus 로고
    • Bioinvasions of the medfly Ceratitis capitata source estimation using DNA sequences at multiple intron loci
    • Davies N., Villablanca F.X., Roderick G.K. Bioinvasions of the medfly Ceratitis capitata source estimation using DNA sequences at multiple intron loci. Genetics 1999, 153:351-360.
    • (1999) Genetics , vol.153 , pp. 351-360
    • Davies, N.1    Villablanca, F.X.2    Roderick, G.K.3
  • 17
    • 0034879445 scopus 로고    scopus 로고
    • A Bayesian approach to the identification of panmictic populations and the assignment of individuals
    • Dawson K.J., Belkhir K. A Bayesian approach to the identification of panmictic populations and the assignment of individuals. Genet. Res. 2001, 78:59-77.
    • (2001) Genet. Res. , vol.78 , pp. 59-77
    • Dawson, K.J.1    Belkhir, K.2
  • 19
    • 0036021407 scopus 로고    scopus 로고
    • Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
    • Drummond A.J., Nicholls G.K., Rodrigo A.G., Solomon W. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 2002, 161:1307-1320.
    • (2002) Genetics , vol.161 , pp. 1307-1320
    • Drummond, A.J.1    Nicholls, G.K.2    Rodrigo, A.G.3    Solomon, W.4
  • 20
    • 17744381574 scopus 로고    scopus 로고
    • Bayesian coalescent inference of past population dynamics from molecular sequences
    • Drummond A.J., Rambaut A., Shapiro B., Pybus O.G. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol. Biol. Evol. 2005, 22:1185-1192.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1185-1192
    • Drummond, A.J.1    Rambaut, A.2    Shapiro, B.3    Pybus, O.G.4
  • 21
    • 0034496840 scopus 로고    scopus 로고
    • Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies
    • Edwards S.V., Beerli P. Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution 2000, 54:1839-1854.
    • (2000) Evolution , vol.54 , pp. 1839-1854
    • Edwards, S.V.1    Beerli, P.2
  • 22
    • 5344241252 scopus 로고    scopus 로고
    • Genetic analysis of complex demographic scenarios: spatially expanding populations of the cane toad, Bufo marinus
    • Estoup A., Beaumont M., Sennedot F., Moritz C., Cornuet J.M. Genetic analysis of complex demographic scenarios: spatially expanding populations of the cane toad, Bufo marinus. Evolution 2004, 58:2021-2036.
    • (2004) Evolution , vol.58 , pp. 2021-2036
    • Estoup, A.1    Beaumont, M.2    Sennedot, F.3    Moritz, C.4    Cornuet, J.M.5
  • 23
    • 0037348820 scopus 로고    scopus 로고
    • Bayesian inferences on the recent island colonization history by the bird Zosterops lateralis lateralis
    • Estoup A., Clegg S.M. Bayesian inferences on the recent island colonization history by the bird Zosterops lateralis lateralis. Mol. Ecol. 2003, 12:657-674.
    • (2003) Mol. Ecol. , vol.12 , pp. 657-674
    • Estoup, A.1    Clegg, S.M.2
  • 24
    • 0035692236 scopus 로고    scopus 로고
    • Inferring population history from microsatellite and enzyme data in serially introduced cane toads, Bufo marinus
    • Estoup A., Wilson I.J., Sullivan C., Cornuet J.M., Moritz C. Inferring population history from microsatellite and enzyme data in serially introduced cane toads, Bufo marinus. Genetics 2001, 159:1671-1687.
    • (2001) Genetics , vol.159 , pp. 1671-1687
    • Estoup, A.1    Wilson, I.J.2    Sullivan, C.3    Cornuet, J.M.4    Moritz, C.5
  • 25
    • 17444424890 scopus 로고    scopus 로고
    • Bayesian analysis of an admixture model with mutations and arbitrarily linked markers
    • Excoffier L., Estoup A., Cornuet J.M. Bayesian analysis of an admixture model with mutations and arbitrarily linked markers. Genetics 2005, 169:1727-1738.
    • (2005) Genetics , vol.169 , pp. 1727-1738
    • Excoffier, L.1    Estoup, A.2    Cornuet, J.M.3
  • 27
    • 0026682501 scopus 로고
    • Estimating effective population size from samples of sequences: inefficiency of pairwise and segregating sites as compared to phylogenetic estimates
    • Felsenstein J. Estimating effective population size from samples of sequences: inefficiency of pairwise and segregating sites as compared to phylogenetic estimates. Genet. Res. 1992, 59:139.
    • (1992) Genet. Res. , vol.59 , pp. 139
    • Felsenstein, J.1
  • 28
    • 0031923522 scopus 로고    scopus 로고
    • Testing models of migration and isolation among populations of chinook salmon (Oncorhynchus tschawytscha)
    • Ford M.J. Testing models of migration and isolation among populations of chinook salmon (Oncorhynchus tschawytscha). Evolution 1998, 52:539-557.
    • (1998) Evolution , vol.52 , pp. 539-557
    • Ford, M.J.1
  • 29
    • 0035065394 scopus 로고    scopus 로고
    • Estimating mutation rate and generation time from longitudinal samples of DNA sequences
    • Fu Y.-X. Estimating mutation rate and generation time from longitudinal samples of DNA sequences. Mol. Biol. Evol. 2001, 18:620-626.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 620-626
    • Fu, Y.-X.1
  • 30
    • 0031038941 scopus 로고    scopus 로고
    • Estimating the age of the common ancestor of a sample of DNA sequences
    • Fu Y.X., Li W.H. Estimating the age of the common ancestor of a sample of DNA sequences. Mol. Biol. Evol. 1997, 14:195-199.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 195-199
    • Fu, Y.X.1    Li, W.H.2
  • 32
    • 20444406878 scopus 로고    scopus 로고
    • Bayesian estimation of recent migration rates after a spatial expansion
    • Hamilton G., Currat M., Ray N., Heckel G., Beaumont M., Excoffier L. Bayesian estimation of recent migration rates after a spatial expansion. Genetics 2005, 170:409-417.
    • (2005) Genetics , vol.170 , pp. 409-417
    • Hamilton, G.1    Currat, M.2    Ray, N.3    Heckel, G.4    Beaumont, M.5    Excoffier, L.6
  • 33
    • 33645076038 scopus 로고    scopus 로고
    • Comparative phylogeographic summary statistics for testing simultaneous vicariance
    • Hickerson M.J., Dolman G., Moritz C. Comparative phylogeographic summary statistics for testing simultaneous vicariance. Mol. Ecol. 2005, 15:209-223.
    • (2005) Mol. Ecol. , vol.15 , pp. 209-223
    • Hickerson, M.J.1    Dolman, G.2    Moritz, C.3
  • 34
    • 33846875227 scopus 로고    scopus 로고
    • Test for simultaneous divergence using approximate Bayesian computation
    • Hickerson M.J., Stahl E.A., Lessios H.A. Test for simultaneous divergence using approximate Bayesian computation. Evolution 2006, 60:2435-2453.
    • (2006) Evolution , vol.60 , pp. 2435-2453
    • Hickerson, M.J.1    Stahl, E.A.2    Lessios, H.A.3
  • 35
    • 34548065664 scopus 로고    scopus 로고
    • MsBayes: pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation
    • Hickerson M.J., Stahl E., Takebayashi N. msBayes: pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation. BMC Bioinformatics 2007, 8:268.
    • (2007) BMC Bioinformatics , vol.8 , pp. 268
    • Hickerson, M.J.1    Stahl, E.2    Takebayashi, N.3
  • 37
    • 0020744702 scopus 로고
    • Properties of a neutral allele model with intragenic recombination
    • Hudson R.R. Properties of a neutral allele model with intragenic recombination. Theor. Popul. Biol. 1983, 23:183-201.
    • (1983) Theor. Popul. Biol. , vol.23 , pp. 183-201
    • Hudson, R.R.1
  • 38
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson R.R. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 2002, 18:337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 39
    • 79959503826 scopus 로고    scopus 로고
    • The international HapMap project
    • International HapMap C
    • International HapMap C The international HapMap project. Nature 2003, 426:789-796.
    • (2003) Nature , vol.426 , pp. 789-796
  • 40
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing C
    • International Human Genome Sequencing C Initial sequencing and analysis of the human genome. Nature 2001, 409:860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 42
    • 51449104123 scopus 로고    scopus 로고
    • Approximately sufficient statistics and Bayesian computation
    • Joyce P., Marjoram P. Approximately sufficient statistics and Bayesian computation. Stat. Appl. Genet. Mol. Biol. 2008, 7:26.
    • (2008) Stat. Appl. Genet. Mol. Biol. , vol.7 , pp. 26
    • Joyce, P.1    Marjoram, P.2
  • 44
    • 0033039497 scopus 로고    scopus 로고
    • Prospects for whole-genome linkage disequilibrium mapping of common disease genes
    • Kruglyak L. Prospects for whole-genome linkage disequilibrium mapping of common disease genes. Nat. Genet. 1999, 22:139-144.
    • (1999) Nat. Genet. , vol.22 , pp. 139-144
    • Kruglyak, L.1
  • 46
    • 34248192358 scopus 로고    scopus 로고
    • Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history
    • Legras J., Merdinoglu D., Cornuet J.M., Karst F. Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history. Mol. Ecol. 2007, 16:2091-2102.
    • (2007) Mol. Ecol. , vol.16 , pp. 2091-2102
    • Legras, J.1    Merdinoglu, D.2    Cornuet, J.M.3    Karst, F.4
  • 48
    • 0034761849 scopus 로고    scopus 로고
    • Bayesian analysis of haplotypes for linkage disequilibrium mapping
    • Liu J.S., Sabatti C., Teng J., Keats B.J.B., Risch N. Bayesian analysis of haplotypes for linkage disequilibrium mapping. Genome Res. 2001, 11:1716-1724.
    • (2001) Genome Res. , vol.11 , pp. 1716-1724
    • Liu, J.S.1    Sabatti, C.2    Teng, J.3    Keats, B.J.B.4    Risch, N.5
  • 49
    • 70349978987 scopus 로고    scopus 로고
    • PopABC: a program to infer historical demographic parameters
    • Lopes J.S., Balding D., Beaumont M.A. PopABC: a program to infer historical demographic parameters. Bioinformatics 2009, 10.1093/bioinformatics/btp487.
    • (2009) Bioinformatics
    • Lopes, J.S.1    Balding, D.2    Beaumont, M.A.3
  • 50
    • 77954029294 scopus 로고    scopus 로고
    • The use of approximate Bayesian computation in conservation genetics and its application in a case study on yellow-eyed penguins
    • Lopes J.S., Boessenkool S. The use of approximate Bayesian computation in conservation genetics and its application in a case study on yellow-eyed penguins. Conserv. Genet. 2009.
    • (2009) Conserv. Genet.
    • Lopes, J.S.1    Boessenkool, S.2
  • 51
    • 70149090840 scopus 로고    scopus 로고
    • The epidemiological fitness cost of drug resistance in Mycobacterium tuberculosis
    • Luciani F., Sisson S.A., Jiang H., Francis A.R., Tanaka M.M. The epidemiological fitness cost of drug resistance in Mycobacterium tuberculosis. Proc. Natl. Acad. Sci. U.S.A. 2009, 106(34):14711-14715.
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , Issue.34 , pp. 14711-14715
    • Luciani, F.1    Sisson, S.A.2    Jiang, H.3    Francis, A.R.4    Tanaka, M.M.5
  • 53
    • 68249147597 scopus 로고    scopus 로고
    • Inference in epidemic models without likelihoods
    • McKinley T., Cook A.R., Deardon R. Inference in epidemic models without likelihoods. Int. J. Biostat. 2009, 5(1):24.
    • (2009) Int. J. Biostat. , vol.5 , Issue.1 , pp. 24
    • McKinley, T.1    Cook, A.R.2    Deardon, R.3
  • 55
    • 0036177752 scopus 로고    scopus 로고
    • Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies
    • Morris A.P., Whittaker J.C., Balding D.J. Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies. Am. J. Hum. Genet. 2002, 70:686-707.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 686-707
    • Morris, A.P.1    Whittaker, J.C.2    Balding, D.J.3
  • 56
    • 38349185030 scopus 로고    scopus 로고
    • Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): inference under a Bayesian spatially explicit framework
    • Neuenschwander S., Largiader C.R., Ray N., Currat M., Vonlanthen P., Excoffier L. Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): inference under a Bayesian spatially explicit framework. Mol. Ecol. 2008, 17:757-772.
    • (2008) Mol. Ecol. , vol.17 , pp. 757-772
    • Neuenschwander, S.1    Largiader, C.R.2    Ray, N.3    Currat, M.4    Vonlanthen, P.5    Excoffier, L.6
  • 57
    • 0034967295 scopus 로고    scopus 로고
    • Distinguishing migration from isolation: a Markov chain Monte Carlo approach
    • Nielsen R., Wakeley J. Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 2001, 158:885-896.
    • (2001) Genetics , vol.158 , pp. 885-896
    • Nielsen, R.1    Wakeley, J.2
  • 58
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
    • Nielsen R., Yang Z. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 1998, 148:929-936.
    • (1998) Genetics , vol.148 , pp. 929-936
    • Nielsen, R.1    Yang, Z.2
  • 59
    • 0036468808 scopus 로고    scopus 로고
    • Linkage disequilibrium: what history has to tell us
    • Nordborg M., Tavare S. Linkage disequilibrium: what history has to tell us. Trends Genet. 2002, 18:83-90.
    • (2002) Trends Genet. , vol.18 , pp. 83-90
    • Nordborg, M.1    Tavare, S.2
  • 61
    • 34447650844 scopus 로고    scopus 로고
    • Introduction history of Drosophila subobscura in the New World: a microsatellite-based survey using ABC methods
    • Pascual M., Chapuis M.P., Mestres F., Balanya J., Huey R.B., Gilchrist G.W., Serra L., Estoup A. Introduction history of Drosophila subobscura in the New World: a microsatellite-based survey using ABC methods. Mol. Ecol. 2007, 16:3069-3083.
    • (2007) Mol. Ecol. , vol.16 , pp. 3069-3083
    • Pascual, M.1    Chapuis, M.P.2    Mestres, F.3    Balanya, J.4    Huey, R.B.5    Gilchrist, G.W.6    Serra, L.7    Estoup, A.8
  • 62
    • 33645057744 scopus 로고    scopus 로고
    • Approximate Bayesian computation and MCMC
    • Springer-Verlag, Heidelberg, H. Niederreiter (Ed.)
    • Plagnol V., Tavare S. Approximate Bayesian computation and MCMC. Monte Carlo and Quasi-Monte Carlo Methods 2002 2003, Springer-Verlag, Heidelberg. H. Niederreiter (Ed.).
    • (2003) Monte Carlo and Quasi-Monte Carlo Methods 2002
    • Plagnol, V.1    Tavare, S.2
  • 63
    • 0035528928 scopus 로고    scopus 로고
    • Case-control studies of association in structured or admixed populations
    • Pritchard J.K., Donnelly P. Case-control studies of association in structured or admixed populations. Theor. Popul. Biol. 2001, 60:227-238.
    • (2001) Theor. Popul. Biol. , vol.60 , pp. 227-238
    • Pritchard, J.K.1    Donnelly, P.2
  • 64
    • 0034977045 scopus 로고    scopus 로고
    • Linkage disequilibrium in humans: models and data
    • Pritchard J.K., Przeworski M. Linkage disequilibrium in humans: models and data. Am. J. Hum. Genet. 2001, 69:1-14.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 1-14
    • Pritchard, J.K.1    Przeworski, M.2
  • 65
    • 0032735986 scopus 로고    scopus 로고
    • Population growth of human Y chromosomes: a study of Y chromosome microsatellites
    • Pritchard J.K., Seielstad M.T., Perez-Lezaun A., Feldman M.W. Population growth of human Y chromosomes: a study of Y chromosome microsatellites. Mol. Biol. Evol. 1999, 16:1791-1798.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1791-1798
    • Pritchard, J.K.1    Seielstad, M.T.2    Perez-Lezaun, A.3    Feldman, M.W.4
  • 66
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard J.K., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 67
    • 0037358963 scopus 로고    scopus 로고
    • The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: a Bayesian coalescent approach
    • Pybus O.G., Drummond A.J., Nakano T., Robertson B.H., Rambaut A. The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: a Bayesian coalescent approach. Mol. Biol. Evol. 2003, 20:381-387.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 381-387
    • Pybus, O.G.1    Drummond, A.J.2    Nakano, T.3    Robertson, B.H.4    Rambaut, A.5
  • 68
    • 0035553825 scopus 로고    scopus 로고
    • Finding genes influencing susceptibility to complex diseases in the post-genome era
    • Rannala B. Finding genes influencing susceptibility to complex diseases in the post-genome era. Am. J. Pharmacogenomics 2001, 1:203.
    • (2001) Am. J. Pharmacogenomics , vol.1 , pp. 203
    • Rannala, B.1
  • 69
    • 0034973984 scopus 로고    scopus 로고
    • High-resolution multipoint linkage-disequilibrium mapping in the context of a human genome sequence
    • Rannala B., Reeve J.P. High-resolution multipoint linkage-disequilibrium mapping in the context of a human genome sequence. Am. J. Hum. Genet. 2001, 69:159-178.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 159-178
    • Rannala, B.1    Reeve, J.P.2
  • 70
    • 0041817551 scopus 로고    scopus 로고
    • Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci
    • Rannala B., Yang Z. Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics 2003, 164:1645-1656.
    • (2003) Genetics , vol.164 , pp. 1645-1656
    • Rannala, B.1    Yang, Z.2
  • 71
    • 36949017519 scopus 로고    scopus 로고
    • Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum
    • Ratmann O., Jørgensen O., Hinkley T., Stumpf M., Richardson S., Wiuf C. Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum. PLoS Comput. Biol. 2007, 3:e230.
    • (2007) PLoS Comput. Biol. , vol.3
    • Ratmann, O.1    Jørgensen, O.2    Hinkley, T.3    Stumpf, M.4    Richardson, S.5    Wiuf, C.6
  • 73
    • 0036245438 scopus 로고    scopus 로고
    • Genealogical trees, coalescent theory and the analysis of genetic polymorphisms
    • Rosenberg N.A., Nordborg M. Genealogical trees, coalescent theory and the analysis of genetic polymorphisms. Nat. Rev. Genet. 2002, 3:380-390.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 380-390
    • Rosenberg, N.A.1    Nordborg, M.2
  • 74
    • 36549055538 scopus 로고    scopus 로고
    • A multilocus perspective on colonization accompanied by selection and gene flow
    • Rosenblum E.B., Hickerson M.J., Moritz C. A multilocus perspective on colonization accompanied by selection and gene flow. Int. J. Organ. Evol. 2007, 61:2971-2985.
    • (2007) Int. J. Organ. Evol. , vol.61 , pp. 2971-2985
    • Rosenblum, E.B.1    Hickerson, M.J.2    Moritz, C.3
  • 75
    • 33748541658 scopus 로고    scopus 로고
    • Evolution of intrahost HIV-1 genetic diversity during chronic infection
    • Shriner D., Liu Y., Nickle D.C., Mullins J.I. Evolution of intrahost HIV-1 genetic diversity during chronic infection. Evolution 2006, 60:1165-1176.
    • (2006) Evolution , vol.60 , pp. 1165-1176
    • Shriner, D.1    Liu, Y.2    Nickle, D.C.3    Mullins, J.I.4
  • 76
  • 78
    • 67650327255 scopus 로고    scopus 로고
    • Approximate Bayesian computation (ABC) without summary statistics: the case of admixture
    • Sousa V.M., Fritz M., Beaumont M.A., Chikhi L. Approximate Bayesian computation (ABC) without summary statistics: the case of admixture. Genetics 2009, 10.1534/genetics.108.098129.
    • (2009) Genetics
    • Sousa, V.M.1    Fritz, M.2    Beaumont, M.A.3    Chikhi, L.4
  • 79
    • 0036006020 scopus 로고    scopus 로고
    • Testing for genetic evidence of population expansion and contraction: an empirical analysis of microsatellite DNA variation using a hierarchical Bayesian model
    • Storz J.F., Beaumont M.A. Testing for genetic evidence of population expansion and contraction: an empirical analysis of microsatellite DNA variation using a hierarchical Bayesian model. Evolution 2002, 56:154-166.
    • (2002) Evolution , vol.56 , pp. 154-166
    • Storz, J.F.1    Beaumont, M.A.2
  • 80
    • 0036856317 scopus 로고    scopus 로고
    • Genetic evidence for long-term population decline in a savannah-dwelling primate: inferences from a hierarchical Bayesian model
    • Storz J.F., Beaumont M.A., Alberts S.C. Genetic evidence for long-term population decline in a savannah-dwelling primate: inferences from a hierarchical Bayesian model. Mol. Biol. Evol. 2002, 19:1981-1990.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1981-1990
    • Storz, J.F.1    Beaumont, M.A.2    Alberts, S.C.3
  • 81
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima F. Evolutionary relationship of DNA sequences in finite populations. Genetics 1983, 105:437-460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 82
    • 0035144108 scopus 로고    scopus 로고
    • Testing multiregionality of modern human origins
    • Takahata N., Lee S.H., Satta Y. Testing multiregionality of modern human origins. Mol. Biol. Evol. 2001, 18:172-183.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 172-183
    • Takahata, N.1    Lee, S.H.2    Satta, Y.3
  • 83
    • 3142749747 scopus 로고    scopus 로고
    • Comparative evaluation of a new effective population size estimator based on approximate Bayesian computation
    • Tallmon D.A., Luikart G., Beaumont M.A. Comparative evaluation of a new effective population size estimator based on approximate Bayesian computation. Genetics 2004, 167:977-988.
    • (2004) Genetics , vol.167 , pp. 977-988
    • Tallmon, D.A.1    Luikart, G.2    Beaumont, M.A.3
  • 84
    • 38949178372 scopus 로고    scopus 로고
    • ONeSAMP: a program to estimate effective population size using approximate Bayesian computation
    • Tallmon D.A., Koyuk A., Luikart G., Beaumont M.A. ONeSAMP: a program to estimate effective population size using approximate Bayesian computation. Mol. Ecol. Resour. 2008, 8:299-301.
    • (2008) Mol. Ecol. Resour. , vol.8 , pp. 299-301
    • Tallmon, D.A.1    Koyuk, A.2    Luikart, G.3    Beaumont, M.A.4
  • 85
    • 33746419713 scopus 로고    scopus 로고
    • Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data
    • Tanaka M.M., Francis A.R., Luciani F., Sisson S.A. Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data. Genetics 2006, 173:1511-1520.
    • (2006) Genetics , vol.173 , pp. 1511-1520
    • Tanaka, M.M.1    Francis, A.R.2    Luciani, F.3    Sisson, S.A.4
  • 88
    • 58149142997 scopus 로고    scopus 로고
    • Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems
    • Toni T., Welch D., Strelkowa N., Ipsen A., Stumpf M.P.H. Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems. J. R. Soc. Interface 2009, 6:187-202.
    • (2009) J. R. Soc. Interface , vol.6 , pp. 187-202
    • Toni, T.1    Welch, D.2    Strelkowa, N.3    Ipsen, A.4    Stumpf, M.P.H.5
  • 89
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Venter J.C. Initial sequencing and analysis of the human genome. Nature 2001, 409:860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Venter, J.C.1
  • 90
    • 0031827528 scopus 로고    scopus 로고
    • Inference of population history using a likelihood approach
    • Weiss G., von Haeseler A. Inference of population history using a likelihood approach. Genetics 1998, 149:1539-1546.
    • (1998) Genetics , vol.149 , pp. 1539-1546
    • Weiss, G.1    von Haeseler, A.2
  • 93
    • 0031669749 scopus 로고    scopus 로고
    • Genealogical inference from microsatellite data
    • Wilson I.J., Balding D.J. Genealogical inference from microsatellite data. Genetics 1998, 150:499-510.
    • (1998) Genetics , vol.150 , pp. 499-510
    • Wilson, I.J.1    Balding, D.J.2
  • 94
    • 0037503021 scopus 로고    scopus 로고
    • Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities (with discussion)
    • Wilson I.J., Weale M.E., Balding D.J. Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities (with discussion). J. R. Stat. Soc. Stat. Soc. 2003, 166:155-202.
    • (2003) J. R. Stat. Soc. Stat. Soc. , vol.166 , pp. 155-202
    • Wilson, I.J.1    Weale, M.E.2    Balding, D.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.