-
1
-
-
84872142934
-
The compass subunit spp1 links histone methylation to initiation of meiotic recombination
-
Acquaviva L, Szekvolgyi L, Dichtl B, Dichtl BS, de La Roche Saint Andre C, Nicolas A, Geli V. 2013. The COMPASS subunit Spp1 links histone methylation to initiation of meiotic recombination. Science 339: 215-218.
-
(2013)
Science
, vol.339
, pp. 215-218
-
-
Acquaviva, L.1
Szekvolgyi, L.2
Dichtl, B.3
Dichtl, B.S.4
De La Roche Saint Andre, C.5
Nicolas, A.6
Geli, V.7
-
2
-
-
67849122320
-
Meme suite: Tools for motif discovery and searching
-
Bailey TL, BodenM, Buske FA, Frith M, Grant CE, Clementi L, Ren J, LiWW, Noble WS. 2009. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37: W202-W208.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Bailey, T.L.1
BodenM Buske, F.A.2
Frith, M.3
Grant, C.E.4
Clementi, L.5
Ren, J.6
Li, W.W.7
Noble, W.S.8
-
3
-
-
76749170346
-
Prdm9 is a major determinant of meiotic recombination hotspots in humans and mice
-
Baudat F, Buard J, Grey C, Fledel-Alon A, Ober C, Przeworski M, Coop G, de Massy B. 2010. PRDM9 is a major determinant of meiotic recombination hotspots in humans and mice. Science 327: 836-840.
-
(2010)
Science
, vol.327
, pp. 836-840
-
-
Baudat, F.1
Buard, J.2
Grey, C.3
Fledel-Alon, A.4
Ober, C.5
Przeworski, M.6
Coop, G.7
De Massy, B.8
-
4
-
-
0017691821
-
Spermatogenic cells of the prepuberal mouse. Isolation and morphological characterization
-
Bellve AR, Cavicchia JC, Millette CF, O'Brien DA, Bhatnagar YM, Dym M. 1977. Spermatogenic cells of the prepuberal mouse. Isolation and morphological characterization. J Cell Biol 74: 68-85.
-
(1977)
J Cell Biol
, vol.74
, pp. 68-85
-
-
Bellve, A.R.1
Cavicchia, J.C.2
Millette, C.F.3
O'Brien, D.A.4
Bhatnagar, Y.M.5
Dym, M.6
-
5
-
-
77957579303
-
Prdm9 variation strongly influences recombination hot-spot activity andmeiotic instability in humans
-
Berg IL, Neumann R, Lam KW, Sarbajna S, Odenthal-Hesse L, May CA, Jeffreys AJ. 2010. PRDM9 variation strongly influences recombination hot-spot activity andmeiotic instability in humans. NatGenet 42: 859-863.
-
(2010)
NatGenet
, vol.42
, pp. 859-863
-
-
Berg, I.L.1
Neumann, R.2
Lam, K.W.3
Sarbajna, S.4
Odenthal-Hesse, L.5
May, C.A.6
Jeffreys, A.J.7
-
6
-
-
79961097286
-
Variants of the protein prdm9 differentially regulate a set of human meiotic recombination hotspots highly active in african populations
-
Berg IL, Neumann R, Sarbajna S, Odenthal-Hesse L, Butler NJ, Jeffreys AJ. 2011. Variants of the protein PRDM9 differentially regulate a set of human meiotic recombination hotspots highly active in African populations. Proc Natl Acad Sci 108: 12378-12383.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 12378-12383
-
-
Berg, I.L.1
Neumann, R.2
Sarbajna, S.3
Odenthal-Hesse, L.4
Butler, N.J.5
Jeffreys, A.J.6
-
7
-
-
78650111988
-
Patterns of recombination activity on mouse chromosome 11 revealed by high resolution mapping
-
Billings T, Sargent EE, Szatkiewicz JP, Leahy N, Kwak IY, Bektassova N, Walker M, Hassold T, Graber JH, Broman KW, et al. 2010. Patterns of recombination activity on mouse chromosome 11 revealed by high resolution mapping. PLoS ONE 5: e15340.
-
(2010)
PLoS ONE
, vol.5
-
-
Billings, T.1
Sargent, E.E.2
Szatkiewicz, J.P.3
Leahy, N.4
Kwak, I.Y.5
Bektassova, N.6
Walker, M.7
Hassold, T.8
Graber, J.H.9
Broman, K.W.10
-
8
-
-
84876672046
-
Dna binding specificities of the long zinc-finger recombination protein prdm9
-
Billings T, Parvanov ED, Baker CL, Walker M, Paigen K, Petkov PM. 2013. DNA binding specificities of the long zinc-finger recombination protein PRDM9. Genome Biol 14: R35.
-
(2013)
Genome Biol
, vol.14
-
-
Billings, T.1
Parvanov, E.D.2
Baker, C.L.3
Walker, M.4
Paigen, K.5
Petkov, P.M.6
-
9
-
-
0030791317
-
The hotspot conversion paradox and the evolution of meiotic recombination
-
Boulton A,Myers RS, Redfield RJ. 1997. The hotspot conversion paradox and the evolution of meiotic recombination. Proc Natl Acad Sci 94: 8058-8063.
-
(1997)
Proc Natl Acad Sci
, vol.94
, pp. 8058-8063
-
-
Boulton, A.1
Myers, R.S.2
Redfield, R.J.3
-
10
-
-
84863770992
-
Genetic recombination is directed away from functional genomic elements in mice
-
Brick K, Smagulova F, Khil P, Camerini-Otero RD, Petukhova GV. 2012. Genetic recombination is directed away from functional genomic elements in mice. Nature 485: 642-645.
-
(2012)
Nature
, vol.485
, pp. 642-645
-
-
Brick, K.1
Smagulova, F.2
Khil, P.3
Camerini-Otero, R.D.4
Petukhova, G.V.5
-
11
-
-
69849115535
-
Distinct histone modifications define initiation and repair of meiotic recombination in the mouse
-
Buard J, Barthes P, Grey C, de Massy B. 2009. Distinct histone modifications define initiation and repair of meiotic recombination in the mouse. EMBO J 28: 2616-2624.
-
(2009)
EMBO J
, vol.28
, pp. 2616-2624
-
-
Buard, J.1
Barthes, P.2
Grey, C.3
De Massy, B.4
-
12
-
-
84898420312
-
Diversity of prdm9 zinc finger array in wild mice unravels new facets of the evolutionary turnover of this coding minisatellite
-
Buard J, Rivals E, Dunoyer de Segonzac D, Garres C, Caminade P, de Massy B, Boursot P. 2014. Diversity of Prdm9 zinc finger array in wild mice unravels new facets of the evolutionary turnover of this coding minisatellite. PLoS ONE 9: e85021.
-
(2014)
PLoS ONE
, vol.9
-
-
Buard, J.1
Rivals, E.2
Dunoyer De Segonzac, D.3
Garres, C.4
Caminade, P.5
De Massy, B.6
Boursot, P.7
-
13
-
-
77953925453
-
Evolutionary conservation of meiotic dsb proteins: More than just spo11
-
Cole F, Keeney S, Jasin M. 2010a. Evolutionary conservation of meiotic DSB proteins: more than just Spo11. Genes Dev 24: 1201-1207.
-
(2010)
Genes Dev
, vol.24
, pp. 1201-1207
-
-
Cole, F.1
Keeney, S.2
Jasin, M.3
-
14
-
-
77956536176
-
Comprehensive, fine-scale dissection of homologous recombination outcomes at a hot spot in mouse meiosis
-
Cole F, Keeney S, Jasin M. 2010b. Comprehensive, fine-scale dissection of homologous recombination outcomes at a hot spot in mouse meiosis. Mol Cell 39: 700-710.
-
(2010)
Mol Cell
, vol.39
, pp. 700-710
-
-
Cole, F.1
Keeney, S.2
Jasin, M.3
-
15
-
-
84862777638
-
Homeostatic control of recombination is implemented progressively in mouse meiosis
-
Cole F, Kauppi L, Lange J, Roig I, Wang R, Keeney S, Jasin M. 2012. Homeostatic control of recombination is implemented progressively in mouse meiosis. Nat Cell Biol 14: 424-430.
-
(2012)
Nat Cell Biol
, vol.14
, pp. 424-430
-
-
Cole, F.1
Kauppi, L.2
Lange, J.3
Roig, I.4
Wang, R.5
Keeney, S.6
Jasin, M.7
-
16
-
-
77954216767
-
Nucleosome occupancy landscape and dynamics at mouse recombination hotspots
-
Getun IV, Wu ZK, Khalil AM, Bois PR. 2010. Nucleosome occupancy landscape and dynamics at mouse recombination hotspots. EMBO Rep 11: 555-560.
-
(2010)
EMBO Rep
, vol.11
, pp. 555-560
-
-
Getun, I.V.1
Wu, Z.K.2
Khalil, A.M.3
Bois, P.R.4
-
17
-
-
84863816297
-
Organization and roles of nucleosomes at mouse meiotic recombination hotspots
-
Getun IV, Wu ZK, Bois PR. 2012. Organization and roles of nucleosomes at mouse meiotic recombination hotspots. Nucleus 3: 244-250.
-
(2012)
Nucleus
, vol.3
, pp. 244-250
-
-
Getun, I.V.1
Wu, Z.K.2
Bois, P.R.3
-
18
-
-
80055056367
-
Mouse prdm9 dna-binding specificity determines sites of histone h3 lysine 4 trimethylation for initiation of meiotic recombination
-
Grey C, Barthes P, Chauveau-Le Friec G, Langa F, Baudat F, de Massy B. 2011. Mouse PRDM9 DNA-binding specificity determines sites of histone H3 lysine 4 trimethylation for initiation of meiotic recombination. PLoS Biol 9: e1001176.
-
(2011)
PLoS Biol
, vol.9
-
-
Grey, C.1
Barthes, P.2
Chauveau-Le Friec, G.3
Langa, F.4
Baudat, F.5
De Massy, B.6
-
19
-
-
75549087699
-
Genetics of mammalian meiosis: Regulation, dynamics and impact on fertility
-
Handel MA, Schimenti JC. 2010. Genetics of mammalian meiosis: regulation, dynamics and impact on fertility. Nat Rev Genet 11: 124-136.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 124-136
-
-
Handel, M.A.1
Schimenti, J.C.2
-
20
-
-
27844440989
-
A histone h3 methyltransferase controls epigenetic events required for meiotic prophase
-
Hayashi K, Yoshida K, Matsui Y. 2005. A histone H3 methyltransferase controls epigenetic events required for meiotic prophase. Nature 438: 374-378.
-
(2005)
Nature
, vol.438
, pp. 374-378
-
-
Hayashi, K.1
Yoshida, K.2
Matsui, Y.3
-
21
-
-
79954478027
-
Act: Aggregation and correlation toolbox for analyses of genome tracks
-
Jee J, Rozowsky J, Yip KY, Lochovsky L, Bjornson R, Zhong G, Zhang Z, Fu Y, Wang J, Weng Z, et al. 2011. ACT: aggregation and correlation toolbox for analyses of genome tracks. Bioinformatics 27: 1152-1154.
-
(2011)
Bioinformatics
, vol.27
, pp. 1152-1154
-
-
Jee, J.1
Rozowsky, J.2
Yip, K.Y.3
Lochovsky, L.4
Bjornson, R.5
Zhong, G.6
Zhang, Z.7
Fu, Y.8
Wang, J.9
Weng, Z.10
-
22
-
-
36448991603
-
Spo11 and the formation of dna double-strand breaks in meiosis
-
Keeney S. 2008. Spo11 and the formation of DNA double-strand breaks in meiosis. Genome Dyn Stab 2: 81-123.
-
(2008)
Genome Dyn Stab
, vol.2
, pp. 81-123
-
-
Keeney, S.1
-
23
-
-
15544372005
-
A torrid zone on mouse chromosome 1 containing a cluster of recombinational hotspots
-
Kelmenson PM, Petkov P, Wang X, Higgins DC, Paigen BJ, Paigen K. 2005. A torrid zone on mouse chromosome 1 containing a cluster of recombinational hotspots. Genetics 169: 833-841.
-
(2005)
Genetics
, vol.169
, pp. 833-841
-
-
Kelmenson, P.M.1
Petkov, P.2
Wang, X.3
Higgins, D.C.4
Paigen, B.J.5
Paigen, K.6
-
24
-
-
84878546627
-
Meiotic and mitotic recombination in meiosis
-
Kohl KP, Sekelsky J. 2013. Meiotic and mitotic recombination in meiosis. Genetics 194: 327-334.
-
(2013)
Genetics
, vol.194
, pp. 327-334
-
-
Kohl, K.P.1
Sekelsky, J.2
-
25
-
-
84902969662
-
Prdm9 polymorphism unveils mouse evolutionary tracks
-
doi: 10.1093/dnares/dst059
-
Kono H, Tamura M, Osada N, Suzuki H, Abe K, Moriwaki K, Ohta K, Shiroishi T. 2014. Prdm9 polymorphism unveils mouse evolutionary tracks. DNA Res. doi: 10.1093/dnares/dst059.
-
DNA Res
, vol.2014
-
-
Kono, H.1
Tamura, M.2
Osada, N.3
Suzuki, H.4
Abe, K.5
Moriwaki, K.6
Ohta, K.7
Shiroishi, T.8
-
26
-
-
0017331464
-
Structure of chromatin
-
Kornberg RD. 1977. Structure of chromatin. Annu Rev Biochem 46: 931-954.
-
(1977)
Annu Rev Biochem
, vol.46
, pp. 931-954
-
-
Kornberg, R.D.1
-
27
-
-
67649884743
-
Fast and accurate short read alignment with burrows-wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
28
-
-
0037352031
-
A highly efficient recombineeringbased method for generating conditional knockout mutations
-
Liu P, Jenkins NA, Copeland NG. 2003. A highly efficient recombineeringbased method for generating conditional knockout mutations. Genome Res 13: 476-484.
-
(2003)
Genome Res
, vol.13
, pp. 476-484
-
-
Liu, P.1
Jenkins, N.A.2
Copeland, N.G.3
-
29
-
-
46449112319
-
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
-
Mavrich TN, Ioshikhes IP, Venters BJ, Jiang C, Tomsho LP, Qi J, Schuster SC, Albert I, Pugh BF. 2008. A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. Genome Res 18: 1073-1083.
-
(2008)
Genome Res
, vol.18
, pp. 1073-1083
-
-
Mavrich, T.N.1
Ioshikhes, I.P.2
Venters, B.J.3
Jiang, C.4
Tomsho, L.P.5
Qi, J.6
Schuster, S.C.7
Albert, I.8
Pugh, B.F.9
-
30
-
-
84865121188
-
An encyclopedia of mouse dna elements (mouse encode)
-
The Mouse ENCODE Project Consortium
-
The Mouse ENCODE Project Consortium, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R, et al. 2012. An encyclopedia of mouse DNA elements (Mouse ENCODE).Genome Biol13:418.
-
(2012)
Genome Biol
, vol.13
, pp. 418
-
-
Snyder, M.1
Hardison, R.2
Ren, B.3
Gingeras, T.4
Gilbert, D.M.5
Groudine, M.6
Bender, M.7
Kaul, R.8
-
31
-
-
76749155072
-
Drive against hotspot motifs in primates implicates the prdm9 gene in meiotic recombination
-
Myers S, Bowden R, Tumian A, Bontrop RE, Freeman C, MacFie TS, McVean G, Donnelly P. 2010. Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination. Science 327: 876-879.
-
(2010)
Science
, vol.327
, pp. 876-879
-
-
Myers, S.1
Bowden, R.2
Tumian, A.3
Bontrop, R.E.4
Freeman, C.5
MacFie, T.S.6
McVean, G.7
Donnelly, P.8
-
32
-
-
84881166117
-
Mechanisms and functions of atp-dependent chromatin-remodeling enzymes
-
Narlikar GJ, Sundaramoorthy R, Owen-Hughes T. 2013. Mechanisms and functions of ATP-dependent chromatin-remodeling enzymes. Cell 154: 490-503.
-
(2013)
Cell
, vol.154
, pp. 490-503
-
-
Narlikar, G.J.1
Sundaramoorthy, R.2
Owen-Hughes, T.3
-
33
-
-
33746144795
-
Clarifying the mechanics of dna strand exchange in meiotic recombination
-
Neale MJ, Keeney S. 2006. Clarifying the mechanics of DNA strand exchange in meiotic recombination. Nature 442: 153-158.
-
(2006)
Nature
, vol.442
, pp. 153-158
-
-
Neale, M.J.1
Keeney, S.2
-
34
-
-
51649083682
-
A quantitative assay for crossover and noncrossover molecular events at individual recombination hotspots in both male and female gametes
-
Ng SH, Parvanov E, Petkov PM, Paigen K. 2008. A quantitative assay for crossover and noncrossover molecular events at individual recombination hotspots in both male and female gametes. Genomics 92: 204-209.
-
(2008)
Genomics
, vol.92
, pp. 204-209
-
-
Ng, S.H.1
Parvanov, E.2
Petkov, P.M.3
Paigen, K.4
-
35
-
-
77249144000
-
Mammalian recombination hot spots: Properties, control and evolution
-
Paigen K, Petkov P. 2010. Mammalian recombination hot spots: properties, control and evolution. Nat Rev Genet 11: 221-233.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 221-233
-
-
Paigen, K.1
Petkov, P.2
-
36
-
-
48249120009
-
The recombinational anatomy of a mouse chromosome
-
Paigen K, Szatkiewicz JP, Sawyer K, Leahy N, Parvanov ED, Ng SH, Graber JH, Broman KW, Petkov PM. 2008. The recombinational anatomy of a mouse chromosome. PLoS Genet 4: e1000119.
-
(2008)
PLoS Genet
, vol.4
-
-
Paigen, K.1
Szatkiewicz, J.P.2
Sawyer, K.3
Leahy, N.4
Parvanov, E.D.5
Ng, S.H.6
Graber, J.H.7
Broman, K.W.8
Petkov, P.M.9
-
37
-
-
79952295560
-
A hierarchical combination of factors shapes the genome-wide topography of yeast meiotic recombination initiation
-
Pan J, Sasaki M, Kniewel R, Murakami H, Blitzblau HG, Tischfield SE, Zhu X, Neale MJ, Jasin M, Socci ND, et al. 2011. A hierarchical combination of factors shapes the genome-wide topography of yeast meiotic recombination initiation. Cell 144: 719-731.
-
(2011)
Cell
, vol.144
, pp. 719-731
-
-
Pan, J.1
Sasaki, M.2
Kniewel, R.3
Murakami, H.4
Blitzblau, H.G.5
Tischfield, S.E.6
Zhu, X.7
Neale, M.J.8
Jasin, M.9
Socci, N.D.10
-
39
-
-
76749151934
-
Prdm9 controls activation of mammalian recombination hotspots
-
Parvanov ED, Petkov PM, Paigen K. 2010. Prdm9 controls activation of mammalian recombination hotspots. Science 327: 835.
-
(2010)
Science
, vol.327
, pp. 835
-
-
Parvanov, E.D.1
Petkov, P.M.2
Paigen, K.3
-
40
-
-
0026011623
-
Dnase i-hypersensitive sites and transcription factor-binding motifs within the mouse e b meiotic recombination hot spot
-
Shenkar R, Shen MH, Arnheim N. 1991. DNase I-hypersensitive sites and transcription factor-binding motifs within the mouse E b meiotic recombination hot spot. Mol Cell Biol 11: 1813-1819.
-
(1991)
Mol Cell Biol
, vol.11
, pp. 1813-1819
-
-
Shenkar, R.1
Shen, M.H.2
Arnheim, N.3
-
41
-
-
79955480674
-
Genome-wide analysis reveals novel molecular features of mouse recombination hotspots
-
Smagulova F, Gregoretti IV, Brick K, Khil P, Camerini-Otero RD, Petukhova GV. 2011. Genome-wide analysis reveals novel molecular features of mouse recombination hotspots. Nature 472: 375-378.
-
(2011)
Nature
, vol.472
, pp. 375-378
-
-
Smagulova, F.1
Gregoretti, I.V.2
Brick, K.3
Khil, P.4
Camerini-Otero, R.D.5
Petukhova, G.V.6
-
42
-
-
84872249432
-
Spp1, a member of the set1 complex, promotes meiotic dsb formation in promoters by tethering histone h3k4 methylation sites to chromosome axes
-
Sommermeyer V, Beneut C, Chaplais E, Serrentino ME, Borde V. 2013. Spp1, a member of the Set1 Complex, promotes meiotic DSB formation in promoters by tethering histone H3K4 methylation sites to chromosome axes. Mol Cell 49: 43-54.
-
(2013)
Mol Cell
, vol.49
, pp. 43-54
-
-
Sommermeyer, V.1
Beneut, C.2
Chaplais, E.3
Serrentino, M.E.4
Borde, V.5
-
43
-
-
77954061801
-
Extraordinary molecular evolution in the prdm9 fertility gene
-
Thomas JH, Emerson RO, Shendure J. 2009. Extraordinary molecular evolution in the PRDM9 fertility gene. PLoS ONE 4: e8505.
-
(2009)
PLoS ONE
, vol.4
-
-
Thomas, J.H.1
Emerson, R.O.2
Shendure, J.3
-
44
-
-
79959557189
-
Determinants of nucleosome organization in primary human cells
-
Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A. 2011. Determinants of nucleosome organization in primary human cells. Nature 474: 516-520.
-
(2011)
Nature
, vol.474
, pp. 516-520
-
-
Valouev, A.1
Johnson, S.M.2
Boyd, S.D.3
Smith, C.L.4
Fire, A.Z.5
Sidow, A.6
-
45
-
-
84881006714
-
Initiation of meiotic recombination in chromatin structure
-
Yamada T, Ohta K. 2013. Initiation of meiotic recombination in chromatin structure. J Biochem 154: 107-114.
-
(2013)
J Biochem
, vol.154
, pp. 107-114
-
-
Yamada, T.1
Ohta, K.2
-
46
-
-
53849146020
-
Model-based analysis of chipseq (macs)
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, LiW, et al. 2008a. Model-based analysis of ChIPSeq (MACS). Genome Biol 9: R137.
-
(2008)
Genome Biol
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
-
47
-
-
57449095143
-
Identifying positioned nucleosomes with epigenetic marks in human from chip-seq
-
Zhang Y, Shin H, Song JS, Lei Y, Liu XS. 2008b. Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq. BMC Genomics 9: 537.
-
(2008)
BMC Genomics
, vol.9
, pp. 537
-
-
Zhang, Y.1
Shin, H.2
Song, J.S.3
Lei, Y.4
Liu, X.S.5
|