-
1
-
-
0017435864
-
Hemoglobins of two terebellid polychaetes: Enoplobranchus sanguineus and Amphitrite ornata
-
Weber, R. E., Mangum, C., Steinman, H., Bonaventura, C., Sullivan, B., and Bonaventura, J. (1977) Hemoglobins of two terebellid polychaetes: Enoplobranchus sanguineus and Amphitrite ornata Comp. Biochem. Physiol. A Comp. Physiol. 56, 179-187
-
(1977)
Comp. Biochem. Physiol. A Comp. Physiol.
, vol.56
, pp. 179-187
-
-
Weber, R.E.1
Mangum, C.2
Steinman, H.3
Bonaventura, C.4
Sullivan, B.5
Bonaventura, J.6
-
2
-
-
0039316844
-
An unusual dehalogenating peroxidase from the marine terebellid polychaete Amphitrite ornata
-
Chen, Y. P., Woodin, S. A., Lincoln, D. E., and Lovell, C. R. (1996) An unusual dehalogenating peroxidase from the marine terebellid polychaete Amphitrite ornata J. Biol. Chem. 271, 4609-4612
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 4609-4612
-
-
Chen, Y.P.1
Woodin, S.A.2
Lincoln, D.E.3
Lovell, C.R.4
-
3
-
-
0034794637
-
Amphitrite ornata, a marine worm, contains two dehaloperoxidase genes
-
Han, K., Woodin, S. A., Lincoln, D. E., Fielman, K. T., and Ely, B. (2001) Amphitrite ornata, a marine worm, contains two dehaloperoxidase genes Mar. Biotechnol. 3, 287-292
-
(2001)
Mar. Biotechnol.
, vol.3
, pp. 287-292
-
-
Han, K.1
Woodin, S.A.2
Lincoln, D.E.3
Fielman, K.T.4
Ely, B.5
-
4
-
-
77952040623
-
Structure of dehaloperoxidase B at 1.58 angstrom resolution and structural characterization of the AB dimer from Amphitrite ornata
-
de Serrano, V., D'Antonio, J., Franzen, S., and Ghiladi, R. A. (2010) Structure of dehaloperoxidase B at 1.58 angstrom resolution and structural characterization of the AB dimer from Amphitrite ornata Acta Crystallogr., Sect. D: Biol. Crystallogr. 66, 529-538
-
(2010)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.66
, pp. 529-538
-
-
De Serrano, V.1
D'Antonio, J.2
Franzen, S.3
Ghiladi, R.A.4
-
5
-
-
0032914442
-
Oxidative 4-dechlorination of 2,4,6-trichlorophenol catalyzed by horseradish peroxidase
-
Ferrari, R. P., Laurenti, E., and Trotta, F. (1999) Oxidative 4-dechlorination of 2,4,6-trichlorophenol catalyzed by horseradish peroxidase JBIC, J. Biol. Inorg. Chem. 4, 232-237
-
(1999)
JBIC, J. Biol. Inorg. Chem.
, vol.4
, pp. 232-237
-
-
Ferrari, R.P.1
Laurenti, E.2
Trotta, F.3
-
6
-
-
84857252001
-
The Dehaloperoxidase Paradox
-
Franzen, S., Thompson, M. K., and Ghiladi, R. A. (2012) The Dehaloperoxidase Paradox Biochim. Biophys. Acta 1824, 578-588
-
(2012)
Biochim. Biophys. Acta
, vol.1824
, pp. 578-588
-
-
Franzen, S.1
Thompson, M.K.2
Ghiladi, R.A.3
-
8
-
-
79959950550
-
Reactivity of Deoxy- and Oxyferrous Dehaloperoxidase B from Amphitrite ornata: Identification of Compound II and Its Ferrous-Hydroperoxide Precursor
-
D'Antonio, J. and Ghiladi, R. A. (2011) Reactivity of Deoxy- and Oxyferrous Dehaloperoxidase B from Amphitrite ornata: Identification of Compound II and Its Ferrous-Hydroperoxide Precursor Biochemistry 50, 5999-6011
-
(2011)
Biochemistry
, vol.50
, pp. 5999-6011
-
-
D'Antonio, J.1
Ghiladi, R.A.2
-
9
-
-
84899439157
-
X-ray Crystal Structures of Substrate-bound for of DHP
-
10.1021/bi400627w.
-
Lebioda, L. and Dawson, J. H. X-ray Crystal Structures of Substrate-bound for of DHP, Biochemistry, 10.1021/bi400627w.
-
Biochemistry
-
-
Lebioda, L.1
Dawson, J.H.2
-
10
-
-
84875986002
-
Structural and Kinetic Study of an Internal Substrate Binding Site in Dehaloperoxidase-Hemoglobin A from Amphitrite ornata
-
Zhao, J., de Serrano, V., Zhao, J. J., Le, P., and Franzen, S. (2013) Structural and Kinetic Study of an Internal Substrate Binding Site in Dehaloperoxidase-Hemoglobin A from Amphitrite ornata Biochemistry 52, 2427-2439
-
(2013)
Biochemistry
, vol.52
, pp. 2427-2439
-
-
Zhao, J.1
De Serrano, V.2
Zhao, J.J.3
Le, P.4
Franzen, S.5
-
11
-
-
84872486657
-
Catalytic efficiency of dehaloperoxidase A is controlled by electrostatics - Application of the vibrational Stark effect to understand enzyme kinetics
-
Schkolnik, G., Utesch, T., Zhao, J. J., Jiang, S., Thompson, M. K., Mroginski, M. A., Hildebrandt, P., and Franzen, S. (2013) Catalytic efficiency of dehaloperoxidase A is controlled by electrostatics-application of the vibrational Stark effect to understand enzyme kinetics Biochem. Biophys. Res. Commun. 430, 1011-1015
-
(2013)
Biochem. Biophys. Res. Commun.
, vol.430
, pp. 1011-1015
-
-
Schkolnik, G.1
Utesch, T.2
Zhao, J.J.3
Jiang, S.4
Thompson, M.K.5
Mroginski, M.A.6
Hildebrandt, P.7
Franzen, S.8
-
12
-
-
84859880405
-
Study of the electrostatic effects of mutations on the surface of dehaloperoxidase-hemoglobin A
-
Zhao, J. J., Rowe, J., Franzen, J., He, C., and Franzen, S. (2012) Study of the electrostatic effects of mutations on the surface of dehaloperoxidase- hemoglobin A Biochem. Biophys. Res. Commun. 420, 733-737
-
(2012)
Biochem. Biophys. Res. Commun.
, vol.420
, pp. 733-737
-
-
Zhao, J.J.1
Rowe, J.2
Franzen, J.3
He, C.4
Franzen, S.5
-
13
-
-
33746349251
-
Spectroscopic Study of Substrate Binding to the Carbonmonoxy Form of Dehaloperoxidase from Amphitrite ornata
-
Nienhaus, K., Deng, P., Belyea, J., Franzen, S., and Nienhaus, G. U. (2006) Spectroscopic Study of Substrate Binding to the Carbonmonoxy Form of Dehaloperoxidase from Amphitrite ornata J. Phys. Chem. B 110, 13264-13276
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 13264-13276
-
-
Nienhaus, K.1
Deng, P.2
Belyea, J.3
Franzen, S.4
Nienhaus, G.U.5
-
14
-
-
55249126699
-
Determinants of Substrate Internalization in the Distal Pocket of Dehaloperoxidase Hemoglobin of Amphitrite ornata
-
Nienhaus, K., Nickel, E., Davis, M. F., Franzen, S., and Nienhaus, G. U. (2008) Determinants of Substrate Internalization in the Distal Pocket of Dehaloperoxidase Hemoglobin of Amphitrite ornata Biochemistry 47, 12985-12994
-
(2008)
Biochemistry
, vol.47
, pp. 12985-12994
-
-
Nienhaus, K.1
Nickel, E.2
Davis, M.F.3
Franzen, S.4
Nienhaus, G.U.5
-
15
-
-
84887599535
-
Functional consequences of the open distal pocket of dehaloperoxidase- hemoglobin observed by time-resolved X-ray crystallography
-
Zhao, J., Srajer, V., and Franzen, S. (2013) Functional consequences of the open distal pocket of dehaloperoxidase-hemoglobin observed by time-resolved X-ray crystallography Biochemistry 52, 7943-7950
-
(2013)
Biochemistry
, vol.52
, pp. 7943-7950
-
-
Zhao, J.1
Srajer, V.2
Franzen, S.3
-
17
-
-
77749259052
-
New insights into the role of distal histidine flexibility in ligand stabilization of Dehaloperoxidase-hemoglobin from Amphitrite ornata
-
Nicoletti, F. P., Thompson, M. K., Howes, B. D., Franzen, S., and Smulevich, G. (2010) New insights into the role of distal histidine flexibility in ligand stabilization of Dehaloperoxidase-hemoglobin from Amphitrite ornata Biochemistry 49, 1903-1912
-
(2010)
Biochemistry
, vol.49
, pp. 1903-1912
-
-
Nicoletti, F.P.1
Thompson, M.K.2
Howes, B.D.3
Franzen, S.4
Smulevich, G.5
-
18
-
-
58549116124
-
Distal histidine conformational flexibility in dehaloperoxidase from Amphitrite ornata
-
Chen, Z., de Serrano, V., Betts, L., and Franzen, S. (2009) Distal histidine conformational flexibility in dehaloperoxidase from Amphitrite ornata Acta Crystallogr., Sect. D: Biol. Crystallogr. D65, 34-40
-
(2009)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.65
, pp. 34-40
-
-
Chen, Z.1
De Serrano, V.2
Betts, L.3
Franzen, S.4
-
19
-
-
0035831479
-
Flavohemoglobin, a globin with a peroxidase-like catalytic site
-
Mukai, M., Mills, C. E., Poole, R. K., and Yeh, S. R. (2001) Flavohemoglobin, a globin with a peroxidase-like catalytic site J. Biol. Chem. 276, 7272-7277
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 7272-7277
-
-
Mukai, M.1
Mills, C.E.2
Poole, R.K.3
Yeh, S.R.4
-
20
-
-
0035815676
-
Disruption of an active site hydrogen bond converts human heme oxygenase-1 into a peroxidase
-
Lightning, L. K., Huang, H., Moenne-Loccoz, P., Loehr, T. M., Schuller, D. J., Poulos, T. L., and de Montellano, P. R. O. (2001) Disruption of an active site hydrogen bond converts human heme oxygenase-1 into a peroxidase J. Biol. Chem. 276, 10612-10619
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 10612-10619
-
-
Lightning, L.K.1
Huang, H.2
Moenne-Loccoz, P.3
Loehr, T.M.4
Schuller, D.J.5
Poulos, T.L.6
De Montellano, P.R.O.7
-
21
-
-
0029646104
-
The crystal structure of chloroperoxidase: A heme peroxidase-cytochrome P450 functional hybrid
-
Sundaramoorthy, M., Terner, J., and Poulos, T. L. (1995) The crystal structure of chloroperoxidase: A heme peroxidase-cytochrome P450 functional hybrid Structure 3, 1367-1377
-
(1995)
Structure
, vol.3
, pp. 1367-1377
-
-
Sundaramoorthy, M.1
Terner, J.2
Poulos, T.L.3
-
22
-
-
33747713301
-
Conformational Mobility in the Active Site of a Heme Peroxidase
-
Badyal, S. K., Joyce, M. G., Sharp, K. H., Seward, H. E., Mewies, M., Basran, J., Macdonald, I. K., Moody, P. C. E., and Raven, E. L. (2006) Conformational Mobility in the Active Site of a Heme Peroxidase J. Biol. Chem. 281, 24512-24520
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 24512-24520
-
-
Badyal, S.K.1
Joyce, M.G.2
Sharp, K.H.3
Seward, H.E.4
Mewies, M.5
Basran, J.6
Macdonald, I.K.7
Moody, P.C.E.8
Raven, E.L.9
-
23
-
-
80155138576
-
Functional Consequences of the Creation of an Asp-His-Fe Triad in a 3/3 Globin
-
D'Antonio, E. L., D'Antonio, J., de Serrano, V., Gracz, H., Thompson, M. K., Ghiladi, R. A., Bowden, E. F., and Franzen, S. (2011) Functional Consequences of the Creation of an Asp-His-Fe Triad in a 3/3 Globin Biochemistry 50, 9664-9680
-
(2011)
Biochemistry
, vol.50
, pp. 9664-9680
-
-
D'Antonio, E.L.1
D'Antonio, J.2
De Serrano, V.3
Gracz, H.4
Thompson, M.K.5
Ghiladi, R.A.6
Bowden, E.F.7
Franzen, S.8
-
24
-
-
84875796365
-
Role of Polarity of the Distal Pocket in the Control of Inhibitor Binding in Dehaloperoxidase-Hemoglobin
-
Plummer, A., Thompson, M. K., and Franzen, S. (2013) Role of Polarity of the Distal Pocket in the Control of Inhibitor Binding in Dehaloperoxidase- Hemoglobin Biochemistry 52, 2218-2227
-
(2013)
Biochemistry
, vol.52
, pp. 2218-2227
-
-
Plummer, A.1
Thompson, M.K.2
Franzen, S.3
-
25
-
-
0019321508
-
The stereochemistry of peroxidase catalysis
-
Poulos, T. L. and Kraut, J. (1980) The stereochemistry of peroxidase catalysis J. Biol. Chem. 255, 8199-8205
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 8199-8205
-
-
Poulos, T.L.1
Kraut, J.2
-
26
-
-
0027424783
-
Effect of Arginine-48 Replacement on the Reaction between Cytochrome-C Peroxidase and Hydrogen-Peroxide
-
Vitello, L. B., Erman, J. E., Miller, M. A., Wang, J., and Kraut, J. (1993) Effect of Arginine-48 Replacement on the Reaction between Cytochrome-C Peroxidase and Hydrogen-Peroxide Biochemistry 32, 9807-9818
-
(1993)
Biochemistry
, vol.32
, pp. 9807-9818
-
-
Vitello, L.B.1
Erman, J.E.2
Miller, M.A.3
Wang, J.4
Kraut, J.5
-
27
-
-
0029986887
-
Crystal structures of CO-, deoxy- and Met-myoglobins at various pH values
-
Yang, F. and Phillips, G. N., Jr. (1996) Crystal structures of CO-, deoxy- and Met-myoglobins at various pH values J. Mol. Biol. 256, 762-774
-
(1996)
J. Mol. Biol.
, vol.256
, pp. 762-774
-
-
Yang, F.1
Phillips Jr., G.N.2
-
28
-
-
0000379278
-
Probing Heme Protein Conformational Equilibration Rates with Kinetic Selection
-
Tian, W. D., Sage, J. T., Champion, P. M., Chien, E., and Sligar, S. G. (1996) Probing Heme Protein Conformational Equilibration Rates with Kinetic Selection Biochemistry 35, 3487-3502
-
(1996)
Biochemistry
, vol.35
, pp. 3487-3502
-
-
Tian, W.D.1
Sage, J.T.2
Champion, P.M.3
Chien, E.4
Sligar, S.G.5
-
29
-
-
78650347504
-
An Investigation of the Distal Histidyl Hydrogen Bonds in Oxyhemoglobin: Effects of Temperature, pH, and Inositol Hexaphosphate
-
Yuan, Y., Simplaceanu, V., Ho, N. T., and Ho, C. (2010) An Investigation of the Distal Histidyl Hydrogen Bonds in Oxyhemoglobin: Effects of Temperature, pH, and Inositol Hexaphosphate Biochemistry 49, 10606-10615
-
(2010)
Biochemistry
, vol.49
, pp. 10606-10615
-
-
Yuan, Y.1
Simplaceanu, V.2
Ho, N.T.3
Ho, C.4
-
30
-
-
76749095979
-
Determination of Separate Inhibitor and Substrate Binding Sites in the Dehaloperoxidase-Hemoglobin from Amphitrite ornata
-
Davis, M. F., Bobay, B. G., and Franzen, S. (2010) Determination of Separate Inhibitor and Substrate Binding Sites in the Dehaloperoxidase- Hemoglobin from Amphitrite ornata Biochemistry 49, 1199-1206
-
(2010)
Biochemistry
, vol.49
, pp. 1199-1206
-
-
Davis, M.F.1
Bobay, B.G.2
Franzen, S.3
-
31
-
-
64349114283
-
Different Modes of Binding of Mono-, Di-, and Trihalogenated Phenols to the Hemoglobin Dehaloperoxidase from Amphitrite ornata
-
Davis, M. F., Gracz, H., Vendeix, F. A. P., de Serrano, V., Somasundaram, A., Decatur, S. M., and Franzen, S. (2009) Different Modes of Binding of Mono-, Di-, and Trihalogenated Phenols to the Hemoglobin Dehaloperoxidase from Amphitrite ornata Biochemistry 48, 2164-2172
-
(2009)
Biochemistry
, vol.48
, pp. 2164-2172
-
-
Davis, M.F.1
Gracz, H.2
Vendeix, F.A.P.3
De Serrano, V.4
Somasundaram, A.5
Decatur, S.M.6
Franzen, S.7
-
32
-
-
34748844557
-
X-ray Crystal Structural Analysis of the Binding Site in the Ferric and Oxyferrous forms of the Recombinant Heme Dehaloperoxidase Cloned from Amphitrite ornata
-
de Serrano, V., Chen, Z., Davis, M. F., and Franzen, S. (2007) X-ray Crystal Structural Analysis of the Binding Site in the Ferric and Oxyferrous forms of the Recombinant Heme Dehaloperoxidase Cloned from Amphitrite ornata Acta Crystallogr., Sect. D: Biol. Crystallogr. D63, 1094-1101
-
(2007)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.63
, pp. 1094-1101
-
-
De Serrano, V.1
Chen, Z.2
Davis, M.F.3
Franzen, S.4
-
33
-
-
0038853525
-
Crystal structures of myoglobin-ligand complexes at near-atomic resolution
-
Vojtechovsky, J., Chu, K., Berendzen, J., Sweet, R. M., and Schlichting, I. (1999) Crystal structures of myoglobin-ligand complexes at near-atomic resolution Biophys. J. 77, 2153-2174
-
(1999)
Biophys. J.
, vol.77
, pp. 2153-2174
-
-
Vojtechovsky, J.1
Chu, K.2
Berendzen, J.3
Sweet, R.M.4
Schlichting, I.5
-
34
-
-
0000348848
-
Bound CO Is A Molecular Probe of Electrostatic Potential in the Distal Pocket of Myoglobin
-
Phillips, G. N., Jr., Teodoro, M. L., Li, T., Smith, B., and Olson, J. S. (1999) Bound CO Is A Molecular Probe of Electrostatic Potential in the Distal Pocket of Myoglobin J. Phys. Chem. B 103, 8817-8829
-
(1999)
J. Phys. Chem. B
, vol.103
, pp. 8817-8829
-
-
Phillips Jr., G.N.1
Teodoro, M.L.2
Li, T.3
Smith, B.4
Olson, J.S.5
-
35
-
-
0014030651
-
An X-ray Study of Azide Methaemoglobin
-
Perutz, M. F. and Mathews, F. S. (1966) An X-ray Study of Azide Methaemoglobin J. Mol. Biol. 21, 199-&
-
(1966)
J. Mol. Biol.
, vol.21
, pp. 199
-
-
Perutz, M.F.1
Mathews, F.S.2
-
36
-
-
10544239110
-
Ordered water molecules as key allosteric mediators in a cooperative dimeric hemoglobin
-
Royer, W. E., Jr., Pardanani, A., Gibson, Q. H., Peterson, E. S., and Friedman, J. M. (1996) Ordered water molecules as key allosteric mediators in a cooperative dimeric hemoglobin Proc. Natl. Acad. Sci. U. S. A. 93, 14526-14531
-
(1996)
Proc. Natl. Acad. Sci. U. S. A.
, vol.93
, pp. 14526-14531
-
-
Royer Jr., W.E.1
Pardanani, A.2
Gibson, Q.H.3
Peterson, E.S.4
Friedman, J.M.5
-
37
-
-
79953185359
-
Blocking the Gate to Ligand Entry in Human Hemoglobin
-
Birukou, I., Soman, J., and Olson, J. S. (2011) Blocking the Gate to Ligand Entry in Human Hemoglobin J. Biol. Chem. 286, 10515-10529
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 10515-10529
-
-
Birukou, I.1
Soman, J.2
Olson, J.S.3
-
38
-
-
0027768729
-
Distal pocket polarity in ligand binding to myoglobin: Deoxy and carbonmonoxy forms of a threonine68(E11) mutant investigated by x-ray crystallography and infrared spectroscopy
-
Cameron, A. D., Smerdon, S. J., Wilkinson, A. J., Habash, J., Helliwell, J. R., Li, T., and Olson, J. S. (1993) Distal pocket polarity in ligand binding to myoglobin: Deoxy and carbonmonoxy forms of a threonine68(E11) mutant investigated by x-ray crystallography and infrared spectroscopy Biochemistry 32, 13061-13070
-
(1993)
Biochemistry
, vol.32
, pp. 13061-13070
-
-
Cameron, A.D.1
Smerdon, S.J.2
Wilkinson, A.J.3
Habash, J.4
Helliwell, J.R.5
Li, T.6
Olson, J.S.7
-
39
-
-
0028223077
-
How Far Can Protein Bend the FeCO Unit? Distal Polar and Steric Effects in Heme Proteins and Models
-
Ray, G. B., Li, X.-Y., Ibers, J. A., Sessler, J. L., and Spiro, T. G. (1994) How Far Can Protein Bend the FeCO Unit? Distal Polar and Steric Effects in Heme Proteins and Models J. Am. Chem. Soc. 116, 162-176
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 162-176
-
-
Ray, G.B.1
Li, X.-Y.2
Ibers, J.A.3
Sessler, J.L.4
Spiro, T.G.5
-
40
-
-
0032550647
-
The Unusual Reactivities of Amphitrite ornata Dehaloperoxidase and Notomastus lobatus Chloroperoxidase Do Not Arise from a Histidine Imidazolate Proximal Heme Iron Ligand
-
Franzen, S., Roach, M. P., Chen, Y.-P., Dyer, R. B., Woodruff, W. H., and Dawson, J. H. (1998) The Unusual Reactivities of Amphitrite ornata Dehaloperoxidase and Notomastus lobatus Chloroperoxidase Do Not Arise from a Histidine Imidazolate Proximal Heme Iron Ligand J. Am. Chem. Soc. 120, 4658-4661
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 4658-4661
-
-
Franzen, S.1
Roach, M.P.2
Chen, Y.-P.3
Dyer, R.B.4
Woodruff, W.H.5
Dawson, J.H.6
-
41
-
-
84857247266
-
Insights into the anomalous heme pocket of rainbow trout myoglobin
-
Howes, B. D., Helbo, S., Fago, A., and Smulevich, G. (2012) Insights into the anomalous heme pocket of rainbow trout myoglobin J. Inorg. Biochem. 109, 1-8
-
(2012)
J. Inorg. Biochem.
, vol.109
, pp. 1-8
-
-
Howes, B.D.1
Helbo, S.2
Fago, A.3
Smulevich, G.4
-
42
-
-
77955257385
-
Internal Binding of Halogenated Phenols in Dehaloperoxidase-hemoglobin Inhibits Peroxidase Activity
-
Thompson, M. K., Davis, M. F., deSorrano, V., Nicoletti, F. P., Howes, B. D., Smulevich, G., and Franzen, S. (2010) Internal Binding of Halogenated Phenols in Dehaloperoxidase-hemoglobin Inhibits Peroxidase Activity Biophys. J. 99, 1586-1595
-
(2010)
Biophys. J.
, vol.99
, pp. 1586-1595
-
-
Thompson, M.K.1
Davis, M.F.2
Desorrano, V.3
Nicoletti, F.P.4
Howes, B.D.5
Smulevich, G.6
Franzen, S.7
-
43
-
-
0024519403
-
Discrimination between Oxygen and Carbon Monoxide and Inhibition of Autooxidation by Myoglobin - Site-Directed Mutagenesis of the Distal Histidine
-
Springer, B. A., Egeberg, K. D., Sligar, S. G., Rohlfs, R. J., Mathews, A. J., and Olson, J. S. (1989) Discrimination Between Oxygen and Carbon Monoxide and Inhibition of Autooxidation by Myoglobin-Site-Directed Mutagenesis of the Distal Histidine J. Biol. Chem. 264, 3057-3060
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 3057-3060
-
-
Springer, B.A.1
Egeberg, K.D.2
Sligar, S.G.3
Rohlfs, R.J.4
Mathews, A.J.5
Olson, J.S.6
-
45
-
-
84857324414
-
An Atomistic View on Human Hemoglobin Carbon Monoxide Migration Processes
-
Lucas, M. F. and Guallar, V. (2012) An Atomistic View on Human Hemoglobin Carbon Monoxide Migration Processes Biophys. J. 102, 887-896
-
(2012)
Biophys. J.
, vol.102
, pp. 887-896
-
-
Lucas, M.F.1
Guallar, V.2
-
46
-
-
84880701543
-
Small ligand-globin interactions: Reviewing lessons derived from computer simulation
-
Capece, L., Boechi, L., Perissinotti, L. L., Arroyo-Manez, P., Bikiel, D. E., Smulevich, G., Marti, M. A., and Estrin, D. A. (2013) Small ligand-globin interactions: Reviewing lessons derived from computer simulation Biochim. Biophys. Acta, Proteins Proteomics 1834, 1722-1738
-
(2013)
Biochim. Biophys. Acta, Proteins Proteomics
, vol.1834
, pp. 1722-1738
-
-
Capece, L.1
Boechi, L.2
Perissinotti, L.L.3
Arroyo-Manez, P.4
Bikiel, D.E.5
Smulevich, G.6
Marti, M.A.7
Estrin, D.A.8
-
47
-
-
84884497354
-
The role of T56 in controlling the flexibility of the distal histidine in dehaloperoxidase-hemoglobin from Amphitrite ornata
-
Jiang, S., Wright, I., Swartz, P., and Franzen, S. (2013) The role of T56 in controlling the flexibility of the distal histidine in dehaloperoxidase- hemoglobin from Amphitrite ornata Biochim. Biophys. Acta, Proteins Proteomics 1834, 2020-2029
-
(2013)
Biochim. Biophys. Acta, Proteins Proteomics
, vol.1834
, pp. 2020-2029
-
-
Jiang, S.1
Wright, I.2
Swartz, P.3
Franzen, S.4
-
48
-
-
80053039198
-
Amphitrite ornata Dehaloperoxidase (DHP): Investigations of Structural Factors That Influence the Mechanism of Halophenol Dehalogenation Using "peroxidase-like" Myoglobin Mutants and "myoglobin-like" DHP Mutants
-
Du, J., Huang, X., Sun, S. F., Wang, C. X., Lebioda, L., and Dawson, J. H. (2011) Amphitrite ornata Dehaloperoxidase (DHP): Investigations of Structural Factors That Influence the Mechanism of Halophenol Dehalogenation Using "Peroxidase-like" Myoglobin Mutants and "Myoglobin-like" DHP Mutants Biochemistry 50, 8172-8180
-
(2011)
Biochemistry
, vol.50
, pp. 8172-8180
-
-
Du, J.1
Huang, X.2
Sun, S.F.3
Wang, C.X.4
Lebioda, L.5
Dawson, J.H.6
-
49
-
-
0035110522
-
Is the CO adduct of myoglobin bent, and does it matter?
-
Spiro, T. G. and Kozlowski, P. M. (2001) Is the CO adduct of myoglobin bent, and does it matter? Acc. Chem. Res. 34, 137-144
-
(2001)
Acc. Chem. Res.
, vol.34
, pp. 137-144
-
-
Spiro, T.G.1
Kozlowski, P.M.2
-
50
-
-
0028086944
-
Determinatino of CO Orientation in Myoglobin by Single-crystal Linear Dichroism
-
Ivanov, D., Sage, J. T., Keim, M., Powell, J. R., Asher, S. A., and Champion, P. M. (1994) Determinatino of CO Orientation in Myoglobin by Single-crystal Linear Dichroism J. Am. Chem. Soc. 116, 4139-4140
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 4139-4140
-
-
Ivanov, D.1
Sage, J.T.2
Keim, M.3
Powell, J.R.4
Asher, S.A.5
Champion, P.M.6
-
51
-
-
0030773396
-
Myoglobin discriminates between O-2, NO, and CO by electrostatic interactions with the bound ligand
-
Olson, J. S. and Phillips, G. N. (1997) Myoglobin discriminates between O-2, NO, and CO by electrostatic interactions with the bound ligand J. Biol. Inorg. Chem. 2, 544-552
-
(1997)
J. Biol. Inorg. Chem.
, vol.2
, pp. 544-552
-
-
Olson, J.S.1
Phillips, G.N.2
-
52
-
-
0017013987
-
Nature of O-2 and CO Binding to Metalloporphyrins and Heme Proteins
-
Collman, J. P., Brauman, J. I., Halbert, T. R., and Suslick, K. S. (1976) Nature of O-2 and CO Binding to Metalloporphyrins and Heme Proteins Proc. Natl. Acad. Sci. U.S.A. 73, 3333-3337
-
(1976)
Proc. Natl. Acad. Sci. U.S.A.
, vol.73
, pp. 3333-3337
-
-
Collman, J.P.1
Brauman, J.I.2
Halbert, T.R.3
Suslick, K.S.4
-
53
-
-
0019827532
-
Neutron Diffraction Reveals Oxygen-Histidine Hydrogen Bond in Oxymyoglobin
-
Phillips, S. E. V. and Schoenborn, B. P. (1981) Neutron Diffraction Reveals Oxygen-Histidine Hydrogen Bond in Oxymyoglobin Nature 292, 81-82
-
(1981)
Nature
, vol.292
, pp. 81-82
-
-
Phillips, S.E.V.1
Schoenborn, B.P.2
-
54
-
-
0030827765
-
Myoglobin models and steric origins of the discrimination between O-2 and CO
-
Slebodnick, C. and Ibers, J. A. (1997) Myoglobin models and steric origins of the discrimination between O-2 and CO J. Bioinorg. Chem. 2, 521-525
-
(1997)
J. Bioinorg. Chem.
, vol.2
, pp. 521-525
-
-
Slebodnick, C.1
Ibers, J.A.2
-
55
-
-
0035023569
-
How the CO in myoglobin acquired its bend: Lessons in interpretation of crystallographic data
-
Stec, B. and Phillips, G. N. (2001) How the CO in myoglobin acquired its bend: lessons in interpretation of crystallographic data Acta Crystallogr., Sect. D: Biol. Crystal 57, 751-754
-
(2001)
Acta Crystallogr., Sect. D: Biol. Crystal
, vol.57
, pp. 751-754
-
-
Stec, B.1
Phillips, G.N.2
-
56
-
-
0037032263
-
An Electrostatic Model for the Frequency Shifts in the Carbonmonoxy Stretching Band of Myoglobin: Correlation of Hydrogen Bonding and the Stark Tuning Rate
-
Franzen, S. (2002) An Electrostatic Model for the Frequency Shifts in the Carbonmonoxy Stretching Band of Myoglobin: Correlation of Hydrogen Bonding and the Stark Tuning Rate J. Am. Chem. Soc. 124, 13271-13281
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 13271-13281
-
-
Franzen, S.1
-
57
-
-
0033520701
-
Determinants of the FeXO (X = C, N, O) vibrational frequencies in heme adducts from experiment and density functional theory
-
Vogel, K. M., Kozlowski, P. M., Zgierski, M. Z., and Spiro, T. G. (1999) Determinants of the FeXO (X = C, N, O) vibrational frequencies in heme adducts from experiment and density functional theory J. Am. Chem. Soc. 121, 9915-9921
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 9915-9921
-
-
Vogel, K.M.1
Kozlowski, P.M.2
Zgierski, M.Z.3
Spiro, T.G.4
-
58
-
-
0033806397
-
Role of the axial ligand in heme-CO backbonding; DFT analysis of vibrational data
-
Vogel, K. M., Kozlowski, P. M., Zgierski, M. Z., and Spiro, T. G. (2000) Role of the axial ligand in heme-CO backbonding; DFT analysis of vibrational data Inorg. Chim. Acta 297, 11-17
-
(2000)
Inorg. Chim. Acta
, vol.297
, pp. 11-17
-
-
Vogel, K.M.1
Kozlowski, P.M.2
Zgierski, M.Z.3
Spiro, T.G.4
-
59
-
-
84880770397
-
Effects of local protein environment on the binding of diatomic molecules to heme in myoglobins. DFT and dispersion-corrected DFT studies
-
Liao, M. S., Huang, M. J., and Watts, J. D. (2013) Effects of local protein environment on the binding of diatomic molecules to heme in myoglobins. DFT and dispersion-corrected DFT studies J. Mol. Model. 19, 3307-3323
-
(2013)
J. Mol. Model.
, vol.19
, pp. 3307-3323
-
-
Liao, M.S.1
Huang, M.J.2
Watts, J.D.3
-
60
-
-
33747202720
-
A DFT study on the relative affinity for oxygen of the alpha and beta subunits of hemoglobin
-
Marechal, J. D., Maseras, F., Lledos, A., Mouawad, L., and Perahia, D. (2006) A DFT study on the relative affinity for oxygen of the alpha and beta subunits of hemoglobin J. Comput. Chem. 27, 1446-1453
-
(2006)
J. Comput. Chem.
, vol.27
, pp. 1446-1453
-
-
Marechal, J.D.1
Maseras, F.2
Lledos, A.3
Mouawad, L.4
Perahia, D.5
-
61
-
-
39749136203
-
DFT analysis of axial and equatorial effects on Heme-CO vibrational modes: Applications to CooA and H-NOX heme sensor proteins
-
Xu, C. L., Ibrahim, M., and Spiro, T. G. (2008) DFT analysis of axial and equatorial effects on Heme-CO vibrational modes: Applications to CooA and H-NOX heme sensor proteins Biochemistry 47, 2379-2387
-
(2008)
Biochemistry
, vol.47
, pp. 2379-2387
-
-
Xu, C.L.1
Ibrahim, M.2
Spiro, T.G.3
-
62
-
-
0035107645
-
Steric contributions to CO binding in heme proteins: A density functional analysis of FeCO vibrations and deformability
-
Kozlowski, P. M., Vogel, K. M., Zgierski, M. Z., and Spiro, T. G. (2001) Steric contributions to CO binding in heme proteins: a density functional analysis of FeCO vibrations and deformability J. Porphyrins Phthalocyanines 5, 312-322
-
(2001)
J. Porphyrins Phthalocyanines
, vol.5
, pp. 312-322
-
-
Kozlowski, P.M.1
Vogel, K.M.2
Zgierski, M.Z.3
Spiro, T.G.4
-
63
-
-
14644398597
-
Quantum chemical evaluation of protein control over heme ligation: CO/O-2 discrimination in myoglobin
-
De Angelis, F., Jarzecki, A. A., Car, R., and Spiro, T. G. (2005) Quantum chemical evaluation of protein control over heme ligation: CO/O-2 discrimination in myoglobin J. Phys. Chem. B 109, 3065-3070
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 3065-3070
-
-
De Angelis, F.1
Jarzecki, A.A.2
Car, R.3
Spiro, T.G.4
-
64
-
-
33646497457
-
Dioxygen affinity in heme proteins investigated by computer simulation
-
Marti, M. A., Crespo, A., Capece, L., Boechi, L., Bikiel, D. E., Scherlis, D. A., and Estrin, D. A. (2006) Dioxygen affinity in heme proteins investigated by computer simulation J. Inorg. Biochem. 100, 761-770
-
(2006)
J. Inorg. Biochem.
, vol.100
, pp. 761-770
-
-
Marti, M.A.1
Crespo, A.2
Capece, L.3
Boechi, L.4
Bikiel, D.E.5
Scherlis, D.A.6
Estrin, D.A.7
-
65
-
-
0031059866
-
Processing of x-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. and Minor, W. (1997) Processing of x-ray diffraction data collected in oscillation mode Methods Enzymol. 276, 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
66
-
-
10844268381
-
The new CCP4 Coordinate Library as a toolkit for the design of coordinate-related applications in protein crystallography
-
Krissinel, E. B., Winn, M. D., Ballard, C. C., Ashton, A. W., Patel, P., Potterton, E. A., McNicholas, S. J., Cowtan, K. D., and Emsley, P. (2004) The new CCP4 Coordinate Library as a toolkit for the design of coordinate-related applications in protein crystallography Acta Crystallogr., Sect. D: Biol. Crystallogr. D60, 2250-2255
-
(2004)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.60
, pp. 2250-2255
-
-
Krissinel, E.B.1
Winn, M.D.2
Ballard, C.C.3
Ashton, A.W.4
Patel, P.5
Potterton, E.A.6
McNicholas, S.J.7
Cowtan, K.D.8
Emsley, P.9
-
67
-
-
16644397843
-
Developments in the CCP4 molecular-graphics project
-
Potterton, L., McNicholas, S., Krissinel, E., Gruber, J., Cowtan, K., Emsley, P., Murshudov, G. N., Cohen, S., Perrakis, A., and Noble, M. (2004) Developments in the CCP4 molecular-graphics project Acta Crystallogr., Sect. D: Biol. Crystallogr. D60, 2288-2294
-
(2004)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.60
, pp. 2288-2294
-
-
Potterton, L.1
McNicholas, S.2
Krissinel, E.3
Gruber, J.4
Cowtan, K.5
Emsley, P.6
Murshudov, G.N.7
Cohen, S.8
Perrakis, A.9
Noble, M.10
-
69
-
-
34447260582
-
An all-electron numerical method for solving the local density functional for polyatomic molecules
-
Delley, B. (1990) An all-electron numerical method for solving the local density functional for polyatomic molecules J. Chem. Phys. 92, 508-517
-
(1990)
J. Chem. Phys.
, vol.92
, pp. 508-517
-
-
Delley, B.1
-
70
-
-
0034319689
-
From molecules to solids with the DMol3 approach
-
Delley, B. (2000) From molecules to solids with the DMol3 approach J. Chem. Phys. 113, 7756-7764
-
(2000)
J. Chem. Phys.
, vol.113
, pp. 7756-7764
-
-
Delley, B.1
-
71
-
-
2842565972
-
Generalized gradient approximation for the exchange-correlation hole of a many-electron system
-
Perdew, J. P., Burke, K., and Wang, Y. (1996) Generalized gradient approximation for the exchange-correlation hole of a many-electron system Phys. Rev. B: Condens. Matter 54, 16533-16539
-
(1996)
Phys. Rev. B: Condens. Matter
, vol.54
, pp. 16533-16539
-
-
Perdew, J.P.1
Burke, K.2
Wang, Y.3
-
72
-
-
36049046910
-
Thermal properties of a homogeneous electron gas
-
Mermin, N. D. (1965) Thermal properties of a homogeneous electron gas Phys. Rev. A 137, 1441-1443
-
(1965)
Phys. Rev. A
, vol.137
, pp. 1441-1443
-
-
Mermin, N.D.1
-
73
-
-
0029878720
-
VMD: Visual molecular dynamics
-
Humphrey, W., Dalke, A., and Schulten, K. (1996) VMD: Visual molecular dynamics J. Mol. Graph. 14, 33-38
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
74
-
-
8344276781
-
NAMD: A parallel, object oriented molecular dynamics program
-
Nelson, M. T., Humphrey, W., Gursoy, A., Dalke, A., Kale, L. V., Skeel, R. D., and Schulten, K. (1996) NAMD: A parallel, object oriented molecular dynamics program Int. J. Supercomput. Appl. High Perform. Comput. 10, 251-268
-
(1996)
Int. J. Supercomput. Appl. High Perform. Comput.
, vol.10
, pp. 251-268
-
-
Nelson, M.T.1
Humphrey, W.2
Gursoy, A.3
Dalke, A.4
Kale, L.V.5
Skeel, R.D.6
Schulten, K.7
-
75
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips, J. C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., Chipot, C., Skeel, R. D., Kale, L., and Schulten, K. (2005) Scalable molecular dynamics with NAMD J. Comput. Chem. 26, 1781-1802
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
76
-
-
0023042853
-
X-ray Structure and Refinement of Carbon Monoxy (Fe-II)-Myoglobin at 1.5 Å Resolution
-
Kuriyan, J., Wilz, S., Karplus, M., and Petsko, G. A. (1986) X-ray Structure and Refinement of Carbon Monoxy (Fe-II)-Myoglobin at 1.5 Å Resolution J. Mol. Biol. 192, 133-154
-
(1986)
J. Mol. Biol.
, vol.192
, pp. 133-154
-
-
Kuriyan, J.1
Wilz, S.2
Karplus, M.3
Petsko, G.A.4
-
77
-
-
77954454306
-
X-ray structure of the metcyano form of dehaloperoxidase from Amphitrite ornata: Evidence for photoreductive dissociation of the iron-cyanide bond
-
de Serrano, V. S., Davis, M. F., Gaff, J. F., Zhang, Q., Chen, Z., D'Antonio, E. L., Bowden, E. F., Rose, R., and Franzen, S. (2010) X-ray structure of the metcyano form of dehaloperoxidase from Amphitrite ornata: evidence for photoreductive dissociation of the iron-cyanide bond Acta Crystallogr., Sect. D: Biol. Cryst. 66, 770-782
-
(2010)
Acta Crystallogr., Sect. D: Biol. Cryst.
, vol.66
, pp. 770-782
-
-
De Serrano, V.S.1
Davis, M.F.2
Gaff, J.F.3
Zhang, Q.4
Chen, Z.5
D'Antonio, E.L.6
Bowden, E.F.7
Rose, R.8
Franzen, S.9
-
78
-
-
39549115043
-
Substrate Binding Triggers a Switch in the Iron Coordination in Dehaloperoxidase from Amphitrite ornata: HYSCORE Experiments
-
Smirnova, T. I., Weber, R. T., Davis, M. F., and Franzen, S. (2008) Substrate Binding Triggers a Switch in the Iron Coordination in Dehaloperoxidase from Amphitrite ornata: HYSCORE Experiments J. Am. Chem. Soc. 130, 2128-2129
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 2128-2129
-
-
Smirnova, T.I.1
Weber, R.T.2
Davis, M.F.3
Franzen, S.4
-
79
-
-
0034705539
-
The crystal structure and amino acid sequence of dehaloperoxidase from Amphitrite ornata indicate common ancestry with globins
-
LaCount, M. W., Zhang, E., Chen, Y. P., Han, K., Whitton, M. M., Lincoln, D. E., Woodin, S. A., and Lebioda, L. (2000) The crystal structure and amino acid sequence of dehaloperoxidase from Amphitrite ornata indicate common ancestry with globins J. Biol. Chem. 275, 18712-18716
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 18712-18716
-
-
Lacount, M.W.1
Zhang, E.2
Chen, Y.P.3
Han, K.4
Whitton, M.M.5
Lincoln, D.E.6
Woodin, S.A.7
Lebioda, L.8
-
80
-
-
0019888621
-
Real Space Refinement of Neutron Diffraction Data from Sperm Whale Carbonmonoxy Myoglobin
-
Hanson, J. C. and Schoenborn, B. P. (1981) Real Space Refinement of Neutron Diffraction Data from Sperm Whale Carbonmonoxy Myoglobin J. Mol. Biol. 153, 117-146
-
(1981)
J. Mol. Biol.
, vol.153
, pp. 117-146
-
-
Hanson, J.C.1
Schoenborn, B.P.2
-
82
-
-
84875793959
-
Structural Evidence for Stabilization of Inhibitor Binding by a Protein Cavity in the Dehaloperoxidase-Hemoglobin from Amphitrite ornata
-
De Serrano, V. and Franzen, S. (2012) Structural Evidence for Stabilization of Inhibitor Binding by a Protein Cavity in the Dehaloperoxidase-Hemoglobin from Amphitrite ornata Peptide Sci. 98, 27-35
-
(2012)
Peptide Sci.
, vol.98
, pp. 27-35
-
-
De Serrano, V.1
Franzen, S.2
-
83
-
-
77952182778
-
Protein structural dynamics in solution unveiled via 100-ps time-resolved x-ray scattering
-
Cho, H. S., Dashdorj, N., Schotte, F., Graber, T., Henning, R., and Anfinrud, P. (2010) Protein structural dynamics in solution unveiled via 100-ps time-resolved x-ray scattering Proc. Natl. Acad. Sci. U.S.A. 107, 7281-7286
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 7281-7286
-
-
Cho, H.S.1
Dashdorj, N.2
Schotte, F.3
Graber, T.4
Henning, R.5
Anfinrud, P.6
-
84
-
-
0038047431
-
Watching a protein as it functions with 150-ps time-resolved X-ray crystallography
-
Schotte, F., Lim, M. H., Jackson, T. A., Smirnov, A. V., Soman, J., Olson, J. S., Phillips, G. N., Wulff, M., and Anfinrud, P. A. (2003) Watching a protein as it functions with 150-ps time-resolved X-ray crystallography Science 300, 1944-1947
-
(2003)
Science
, vol.300
, pp. 1944-1947
-
-
Schotte, F.1
Lim, M.H.2
Jackson, T.A.3
Smirnov, A.V.4
Soman, J.5
Olson, J.S.6
Phillips, G.N.7
Wulff, M.8
Anfinrud, P.A.9
-
85
-
-
70350705724
-
Ligand Migration and Cavities within Scapharca Dimeric Hbl: Studies by Time-Resolved Crystallography, Xe Binding, and Computational Analysis
-
Knapp, J. E., Pahl, R., Cohen, J., Nichols, J. C., Schulten, K., Gibson, Q. H., Srajer, V., and Royer, W. E. (2009) Ligand Migration and Cavities within Scapharca Dimeric Hbl: Studies by Time-Resolved Crystallography, Xe Binding, and Computational Analysis Structure 17, 1494-1504
-
(2009)
Structure
, vol.17
, pp. 1494-1504
-
-
Knapp, J.E.1
Pahl, R.2
Cohen, J.3
Nichols, J.C.4
Schulten, K.5
Gibson, Q.H.6
Srajer, V.7
Royer, W.E.8
-
86
-
-
33646755415
-
Allosteric action in real time: Time-resolved crystallographic studies of a cooperative dimeric hemoglobin
-
Knapp, J. E., Pahl, R., Srajer, V., and Royer, W. E. (2006) Allosteric action in real time: Time-resolved crystallographic studies of a cooperative dimeric hemoglobin Proc. Natl. Acad. Sci. U. S. A. 103, 7649-7654
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 7649-7654
-
-
Knapp, J.E.1
Pahl, R.2
Srajer, V.3
Royer, W.E.4
|