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Volumn 19, Issue 8, 2013, Pages 3307-3323

Effects of local protein environment on the binding of diatomic molecules to heme in myoglobins. DFT and dispersion-corrected DFT studies

Author keywords

Carbon monoxide; DFT calculations; Dispersion correction; Myoglobins; Oxygen

Indexed keywords

HEME; HEMOGLOBIN; HEMOPROTEIN; MYOGLOBIN; OXYGEN; PORPHYRIN; PROTOPORPHYRIN;

EID: 84880770397     PISSN: 16102940     EISSN: 09485023     Source Type: Journal    
DOI: 10.1007/s00894-013-1864-2     Document Type: Article
Times cited : (6)

References (72)
  • 1
    • 0004155427 scopus 로고
    • 4 Freeman New York
    • Stryer L (1981) Biochemistry, 4th edn. Freeman, New York
    • (1981) Biochemistry
    • Stryer, L.1
  • 3
    • 0023042853 scopus 로고
    • X-ray structure and refinement of carbon- monoxy (Fe II)-myoglobin at 1.5 Å resolution
    • 10.1016/0022-2836(86)90470-5 1:CAS:528:DyaL2sXksF2ntA%3D%3D
    • Kuriyan J, Wilz S, Karplus M, Petsko GA (1986) X-ray structure and refinement of carbon- monoxy (Fe II)-myoglobin at 1.5 Å resolution. J Mol Biol 192:133-154
    • (1986) J Mol Biol , vol.192 , pp. 133-154
    • Kuriyan, J.1    Wilz, S.2    Karplus, M.3    Petsko, G.A.4
  • 4
    • 0025882875 scopus 로고
    • Neutron diffraction study of carbonmonoxymyoglobin
    • 10.1016/0022-2836(91)90020-7 1:CAS:528:DyaK3MXltlShurg%3D
    • Cheng X-D, Schoenborn BP (1991) Neutron diffraction study of carbonmonoxymyoglobin. J Mol Biol 220:381-399
    • (1991) J Mol Biol , vol.220 , pp. 381-399
    • Cheng, X.-D.1    Schoenborn, B.P.2
  • 5
    • 0033574735 scopus 로고    scopus 로고
    • A steric mechanism for inhibition of CO binding to heme proteins
    • 10.1126/science.284.5413.473 1:CAS:528:DyaK1MXisFOksLk%3D
    • Kachalova GS, Popov AN, Bartunik HD (1999) A steric mechanism for inhibition of CO binding to heme proteins. Science 284:473-476
    • (1999) Science , vol.284 , pp. 473-476
    • Kachalova, G.S.1    Popov, A.N.2    Bartunik, H.D.3
  • 6
    • 0038853525 scopus 로고    scopus 로고
    • Crystal structures of myoglobin-ligand complexes at near-atomic resolution
    • 10.1016/S0006-3495(99)77056-6 1:CAS:528:DyaK1MXmtl2mtrc%3D
    • Vojtechovsky J, Chu K, Berendzen J, Sweet RM, Schlichting I (1999) Crystal structures of myoglobin-ligand complexes at near-atomic resolution. Biophys J 77:2153-2174
    • (1999) Biophys J , vol.77 , pp. 2153-2174
    • Vojtechovsky, J.1    Chu, K.2    Berendzen, J.3    Sweet, R.M.4    Schlichting, I.5
  • 7
    • 0029647452 scopus 로고
    • Binding of CO to myoglobin from a heme pocket docking site to form nearly linear Fe-C-O
    • 10.1126/science.7638619 1:CAS:528:DyaK2MXnsFOmtL0%3D
    • Lim M-H, Jackson TA, Anfinrud PA (1995) Binding of CO to myoglobin from a heme pocket docking site to form nearly linear Fe-C-O. Science 269:962-966
    • (1995) Science , vol.269 , pp. 962-966
    • Lim, M.-H.1    Jackson, T.A.2    Anfinrud, P.A.3
  • 8
    • 0028086944 scopus 로고
    • Determination of CO orientation in myoglobin by single-crystal infrared linear dichroism
    • 10.1021/ja00088a084 1:CAS:528:DyaK2cXktVemsLo%3D
    • Ivanov D, Sage JT, Keim M, Powell JR, Asher SA (1994) Determination of CO orientation in myoglobin by single-crystal infrared linear dichroism. J Am Chem Soc 116:4139-4140
    • (1994) J Am Chem Soc , vol.116 , pp. 4139-4140
    • Ivanov, D.1    Sage, J.T.2    Keim, M.3    Powell, J.R.4    Asher, S.A.5
  • 9
    • 0035107645 scopus 로고    scopus 로고
    • Steric contributions to CO binding in heme proteins: A density functional analysis of FeCO vibrations and deformability
    • 10.1002/jpp.318 1:CAS:528:DC%2BD3MXhvFSmtbY%3D
    • Kozlowski PM, Vogel KM, Zgierski MZ, Spiro TG (2001) Steric contributions to CO binding in heme proteins: a density functional analysis of FeCO vibrations and deformability. J Porph Phthal 5:312-322
    • (2001) J Porph Phthal , vol.5 , pp. 312-322
    • Kozlowski, P.M.1    Vogel, K.M.2    Zgierski, M.Z.3    Spiro, T.G.4
  • 11
    • 0001306148 scopus 로고
    • Mechanisms of ligand recognition in myoglobin
    • 10.1021/cr00027a007 1:CAS:528:DyaK2cXivFahsrY%3D
    • Springer BA, Sligar SG, Olson JS, Phillips GN (1994) Mechanisms of ligand recognition in myoglobin. Chem Rev 94:699-714
    • (1994) Chem Rev , vol.94 , pp. 699-714
    • Springer, B.A.1    Sligar, S.G.2    Olson, J.S.3    Phillips, G.N.4
  • 12
    • 0019827532 scopus 로고
    • Neutron diffraction reveals oxygen-histidine hydrogen bond in oxymyoglobin
    • 10.1038/292081a0 1:CAS:528:DyaL3MXlvVamtLk%3D
    • Phillips SEV, Schoenborn BP (1981) Neutron diffraction reveals oxygen-histidine hydrogen bond in oxymyoglobin. Nature 292:81-82
    • (1981) Nature , vol.292 , pp. 81-82
    • Phillips, S.E.V.1    Schoenborn, B.P.2
  • 13
    • 0034641754 scopus 로고    scopus 로고
    • NMR reveals hydrogen bonds between oxygen and distal histidines in oxyhemoglobin
    • 10.1073/pnas.190254697 1:CAS:528:DC%2BD3cXms1Crs7k%3D
    • Lukin JA, Simplaceanu V, Zou M, Ho NT, Ho C (2000) NMR reveals hydrogen bonds between oxygen and distal histidines in oxyhemoglobin. Proc Natl Acad Sci USA 97:10354-10358
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 10354-10358
    • Lukin, J.A.1    Simplaceanu, V.2    Zou, M.3    Ho, N.T.4    Ho, C.5
  • 15
    • 0037173553 scopus 로고    scopus 로고
    • 2 and CO by myoglobin
    • 10.1016/S0162-0134(02)00426-9 1:CAS:528:DC%2BD38Xlt12ms78%3D
    • 2 and CO by myoglobin. J Inorg Biochem 91:101-115
    • (2002) J Inorg Biochem , vol.91 , pp. 101-115
    • Sigfridsson, E.1    Ryde, U.2
  • 16
    • 1542277246 scopus 로고
    • On the low-lying states and electronic spectroscopy of iron(II) porphine
    • 10.1021/ja00269a012 1:CAS:528:DyaL28XhslKqsLk%3D
    • Edwards WD, Weiner B, Zerner MC (1986) On the low-lying states and electronic spectroscopy of iron(II) porphine. J Am Chem Soc 108:2196-2204
    • (1986) J Am Chem Soc , vol.108 , pp. 2196-2204
    • Edwards, W.D.1    Weiner, B.2    Zerner, M.C.3
  • 17
    • 33845184337 scopus 로고
    • Electronic structure of nitrosyl ferrous heme complexes
    • 10.1021/ja00190a004 1:CAS:528:DyaL1MXhsFSjsr8%3D
    • Waleh A, Ho N, Chantranupong L, Loew GH (1989) Electronic structure of nitrosyl ferrous heme complexes. J Am Chem Soc 111:2767-2772
    • (1989) J Am Chem Soc , vol.111 , pp. 2767-2772
    • Waleh, A.1    Ho, N.2    Chantranupong, L.3    Loew, G.H.4
  • 18
    • 0001677817 scopus 로고
    • Binding of oxygen and carbon monoxide to hemoglobin. An analysis of the ground and excited states
    • 10.1021/ja00510a001 1:CAS:528:DyaE1MXlslSitbk%3D
    • Case DA, Huynh BH, Karplus M (1979) Binding of oxygen and carbon monoxide to hemoglobin. An analysis of the ground and excited states. J Am Chem Soc 101:4433-4453
    • (1979) J Am Chem Soc , vol.101 , pp. 4433-4453
    • Case, D.A.1    Huynh, B.H.2    Karplus, M.3
  • 19
    • 33847089519 scopus 로고
    • Qualitative discussion of alternative coordination modes of diatomic ligands in transition metal complexes
    • 10.1021/ic50169a001 1:CAS:528:DyaE2sXps1aiug%3D%3D
    • Hoffmann R, Chen MML, Thorn DL (1977) Qualitative discussion of alternative coordination modes of diatomic ligands in transition metal complexes. Inorg Chem 16:503-511
    • (1977) Inorg Chem , vol.16 , pp. 503-511
    • Hoffmann, R.1    Chen, M.M.L.2    Thorn, D.L.3
  • 20
    • 0031276121 scopus 로고    scopus 로고
    • Equilibrium geometries and electronic structure of iron-porphyrin complexes: A density functional study
    • 10.1021/jp9722115 1:CAS:528:DyaK2sXntVagsLs%3D
    • Rovira C, Kunc K, Hutter J, Ballone P, Parrinello M (1997) Equilibrium geometries and electronic structure of iron-porphyrin complexes: a density functional study. J Phys Chem A 101:8914-8925
    • (1997) J Phys Chem A , vol.101 , pp. 8914-8925
    • Rovira, C.1    Kunc, K.2    Hutter, J.3    Ballone, P.4    Parrinello, M.5
  • 21
    • 0032954864 scopus 로고    scopus 로고
    • Factors influencing ligand-binding properties of heme models: A first principles study of picket-fence and protoheme complexes
    • 10.1002/(SICI)1521-3765(19990104)5:1<250: AID-CHEM250>3.0.CO;2-C 1:CAS:528:DyaK1MXntFeqsg%3D%3D
    • Rovira C, Parrinello M (1999) Factors influencing ligand-binding properties of heme models: a first principles study of picket-fence and protoheme complexes. Chem Eur J 5:250-262
    • (1999) Chem Eur J , vol.5 , pp. 250-262
    • Rovira, C.1    Parrinello, M.2
  • 22
    • 0033520701 scopus 로고    scopus 로고
    • Determinants of the FeXO (X = C, N, O) vibrational frequencies in heme adducts from experiment and density functional theory
    • 10.1021/ja990042r 1:CAS:528:DyaK1MXlslCiuro%3D
    • Vogel KM, Kozlowski PM, Zgierski MZ, Spiro TG (1999) Determinants of the FeXO (X = C, N, O) vibrational frequencies in heme adducts from experiment and density functional theory. J Am Chem Soc 121:9915-9921
    • (1999) J Am Chem Soc , vol.121 , pp. 9915-9921
    • Vogel, K.M.1    Kozlowski, P.M.2    Zgierski, M.Z.3    Spiro, T.G.4
  • 23
    • 0033806397 scopus 로고    scopus 로고
    • Role of the axial ligand in heme- CO backbonding; DFT analysis of vibrational data
    • 10.1016/S0020-1693(99)00253-4 1:CAS:528:DC%2BD3cXms1Citg%3D%3D
    • Vogel KM, Kozlowski PM, Zgierski MZ, Spiro TG (2000) Role of the axial ligand in heme- CO backbonding; DFT analysis of vibrational data. Inorg Chim Acta 297:11-17
    • (2000) Inorg Chim Acta , vol.297 , pp. 11-17
    • Vogel, K.M.1    Kozlowski, P.M.2    Zgierski, M.Z.3    Spiro, T.G.4
  • 24
    • 0034072374 scopus 로고    scopus 로고
    • 2 in heme models
    • 10.1016/S0006-3495(00)76575-1 1:CAS:528:DC%2BD3cXktFeltA%3D%3D
    • 2 in heme models. Biophys J 78:93-100
    • (2000) Biophys J , vol.78 , pp. 93-100
    • Rovira, C.1    Parrinello, M.2
  • 25
    • 0034951055 scopus 로고    scopus 로고
    • Influence of the heme pocket conformation on the structure and vibrations of the Fe-CO bond in myoglobin: A QM/MM density functional study
    • 10.1016/S0006-3495(01)75711-6 1:CAS:528:DC%2BD3MXkvFWhtL8%3D
    • Rovira C, Schulze B, Eichinger M, Evanseck JD, Parrinello M (2001) Influence of the heme pocket conformation on the structure and vibrations of the Fe-CO bond in myoglobin: a QM/MM density functional study. Biophys J 81:435-445
    • (2001) Biophys J , vol.81 , pp. 435-445
    • Rovira, C.1    Schulze, B.2    Eichinger, M.3    Evanseck, J.D.4    Parrinello, M.5
  • 28
    • 33645789373 scopus 로고    scopus 로고
    • The Fe-CO bond energy in myoglobin: A QM/MM study of the effect of tertiary structure
    • 10.1529/biophysj.105.078097 1:CAS:528:DC%2BD28Xhslaku7g%3D
    • Strickland N, Mulholland AJ, Harvey JN (2006) The Fe-CO bond energy in myoglobin: a QM/MM study of the effect of tertiary structure. Biophys J 90:L27-L29
    • (2006) Biophys J , vol.90
    • Strickland, N.1    Mulholland, A.J.2    Harvey, J.N.3
  • 29
    • 34547372841 scopus 로고    scopus 로고
    • Simulation of heme using DFT + U: A step toward accurate spin-state energetics
    • 10.1021/jp070549l 1:CAS:528:DC%2BD2sXmtVKlur4%3D
    • Scherlis DA, Cococcioni M, Sit P, Marzari N (2007) Simulation of heme using DFT + U: a step toward accurate spin-state energetics. J Phys Chem B 111:7384-7391
    • (2007) J Phys Chem B , vol.111 , pp. 7384-7391
    • Scherlis, D.A.1    Cococcioni, M.2    Sit, P.3    Marzari, N.4
  • 30
    • 33847050884 scopus 로고    scopus 로고
    • Spin-forbidden ligand binding to the ferrous-heme group: Ab initio and DFT studies
    • 10.1021/jp064091j 1:CAS:528:DC%2BD2sXjt1OntQ%3D%3D
    • Strickland N, Harvey JN (2007) Spin-forbidden ligand binding to the ferrous-heme group: ab initio and DFT studies. J Phys Chem B 111:841-852
    • (2007) J Phys Chem B , vol.111 , pp. 841-852
    • Strickland, N.1    Harvey, J.N.2
  • 31
    • 55549126854 scopus 로고    scopus 로고
    • 2 bonding in oxy-myoglobin: Effect of the protein
    • 10.1021/ja805434m 1:CAS:528:DC%2BD1cXht1emtr%2FK
    • 2 bonding in oxy-myoglobin: effect of the protein. J Am Chem Soc 130:14778-14790
    • (2008) J Am Chem Soc , vol.130 , pp. 14778-14790
    • Chen, H.1    Ikeda-Saito, M.2    Shaik, S.3
  • 32
    • 77956632873 scopus 로고    scopus 로고
    • Significant van der Waals effects in transition metal complexes
    • 10.1021/ct100213e 1:CAS:528:DC%2BC3cXntF2jtbc%3D
    • Siegbahn PEM, Blomberg MRA, Chen S-L (2010) Significant van der Waals effects in transition metal complexes. J Chem Theory Comput 6:2040-2044
    • (2010) J Chem Theory Comput , vol.6 , pp. 2040-2044
    • Siegbahn, P.E.M.1    Blomberg, M.R.A.2    Chen, S.-L.3
  • 33
    • 84861884694 scopus 로고    scopus 로고
    • Ligand discrimination in myoglobin from linear-scaling DFT + U
    • 10.1021/jz3004188 1:CAS:528:DC%2BC38XmvFWrtb8%3D
    • Cole DJ, O'Regan DD, Payne MC (2012) Ligand discrimination in myoglobin from linear-scaling DFT + U. J Phys Chem Lett 3:1448-1452
    • (2012) J Phys Chem Lett , vol.3 , pp. 1448-1452
    • Cole, D.J.1    O'Regan, D.D.2    Payne, M.C.3
  • 34
    • 0030773396 scopus 로고    scopus 로고
    • 2, NO, and CO by electrostatic interactions with the bound ligand
    • 10.1007/s007750050169 1:CAS:528:DyaK2sXmt1yhtbc%3D
    • 2, NO, and CO by electrostatic interactions with the bound ligand. J Biol Inorg Chem 2:544-552
    • (1997) J Biol Inorg Chem , vol.2 , pp. 544-552
    • Olson, J.S.1    Phillips, G.N.2
  • 38
    • 2542445605 scopus 로고    scopus 로고
    • Tyrosine B10 inhibits stabilization of bound carbon monoxide and oxygen in soybean leghemoglobin
    • 10.1021/bi049848g 1:CAS:528:DC%2BD2cXjsVSgt7s%3D
    • Kundu S, Blouin GC, Premer SA, Sarath G, Olson JS, Hargrove MS (2004) Tyrosine B10 inhibits stabilization of bound carbon monoxide and oxygen in soybean leghemoglobin. Biochemistry 43:6241-6252
    • (2004) Biochemistry , vol.43 , pp. 6241-6252
    • Kundu, S.1    Blouin, G.C.2    Premer, S.A.3    Sarath, G.4    Olson, J.S.5    Hargrove, M.S.6
  • 39
    • 0033596330 scopus 로고    scopus 로고
    • Binding of nitric oxide to iron(II) porphyrins: Radiative association, blackbody infrared radiative dissociation and gas-phase association equilibrium
    • 10.1021/ja991477h 1:CAS:528:DyaK1MXnslSlsro%3D
    • Chen O, Groh S, Liechty A, Ridge DP (1999) Binding of nitric oxide to iron(II) porphyrins: radiative association, blackbody infrared radiative dissociation and gas-phase association equilibrium. J Am Chem Soc 121:11910-11911
    • (1999) J Am Chem Soc , vol.121 , pp. 11910-11911
    • Chen, O.1    Groh, S.2    Liechty, A.3    Ridge, D.P.4
  • 40
    • 3042907629 scopus 로고
    • Synthetic heme-dioxygen complexes
    • 10.1021/cr00027a006 1:CAS:528:DyaK2cXivVygs70%3D
    • Momenteau M, Reed CA (1994) Synthetic heme-dioxygen complexes. Chem Rev 94:659-698
    • (1994) Chem Rev , vol.94 , pp. 659-698
    • Momenteau, M.1    Reed, C.A.2
  • 41
    • 0035110522 scopus 로고    scopus 로고
    • Is the CO adduct of myoglobin bent, and does it matter?
    • 10.1021/ar000108j 1:CAS:528:DC%2BD3cXotlKiurc%3D
    • Spiro TG, Kozlowski PM (2001) Is the CO adduct of myoglobin bent, and does it matter? Acc Chem Res 34:137-144
    • (2001) Acc Chem Res , vol.34 , pp. 137-144
    • Spiro, T.G.1    Kozlowski, P.M.2
  • 42
    • 33745172792 scopus 로고    scopus 로고
    • A fast correlated electronic structure method for computing interaction energies of large van der Waals complexes applied to the fullerene-porphyrin dimer
    • 10.1039/b602438f 1:CAS:528:DC%2BD28Xls1KisL8%3D
    • Jung Y, Head-Gordon M (2006) A fast correlated electronic structure method for computing interaction energies of large van der Waals complexes applied to the fullerene-porphyrin dimer. Phys Chem Chem Phys 8:2831-2840
    • (2006) Phys Chem Chem Phys , vol.8 , pp. 2831-2840
    • Jung, Y.1    Head-Gordon, M.2
  • 43
    • 33749607747 scopus 로고    scopus 로고
    • High-accuracy quantum mechanical studies of pi-pi interactions in benzene dimers
    • 10.1021/jp0610416 1:CAS:528:DC%2BD28XnsF2hs7c%3D
    • Sinnokrot MO, Sherrill CD (2006) High-accuracy quantum mechanical studies of pi-pi interactions in benzene dimers. J Phys Chem A 110:10656-10668
    • (2006) J Phys Chem A , vol.110 , pp. 10656-10668
    • Sinnokrot, M.O.1    Sherrill, C.D.2
  • 44
    • 22944489600 scopus 로고    scopus 로고
    • Density-functional theory-symmetry-adapted intermolecular perturbation theory with density fitting: A new efficient method to study intermolecular interaction energies
    • Hesselmann A, Jansen G, Schütz M (2005) Density-functional theory-symmetry-adapted intermolecular perturbation theory with density fitting: a new efficient method to study intermolecular interaction energies. J Chem Phys 122:14103-14120
    • (2005) J Chem Phys , vol.122 , pp. 14103-14120
    • Hesselmann A, J.1
  • 45
    • 4043164887 scopus 로고    scopus 로고
    • Accurate description of van der Waals complexes by density functional theory including empirical corrections
    • 10.1002/jcc.20078 1:CAS:528:DC%2BD2cXmtFKgt78%3D
    • Grimme S (2004) Accurate description of van der Waals complexes by density functional theory including empirical corrections. J Comput Chem 25:1463-1473
    • (2004) J Comput Chem , vol.25 , pp. 1463-1473
    • Grimme, S.1
  • 46
    • 77955003137 scopus 로고    scopus 로고
    • Stabilization and structure calculations for noncovalent interactions in extended molecular systems based on wave function and density functional theories
    • 10.1021/cr1000173 1:CAS:528:DC%2BC3cXmt12mt7k%3D
    • Riley KE, Pitonak M, Jurecka P, Hobza P (2010) Stabilization and structure calculations for noncovalent interactions in extended molecular systems based on wave function and density functional theories. Chem Rev 110:5023-5063
    • (2010) Chem Rev , vol.110 , pp. 5023-5063
    • Riley, K.E.1    Pitonak, M.2    Jurecka, P.3    Hobza, P.4
  • 47
    • 84872322429 scopus 로고    scopus 로고
    • Assessment of dispersion corrections in DFT calculations on large biological systems
    • 10.1080/00268976.2012.695811 10.1080/00268976.2012.695811 1:CAS:528:DC%2BC38XnsVGltLY%3D
    • Liao M-S, Huang M-J, Watts JD (2012) Assessment of dispersion corrections in DFT calculations on large biological systems. Mol Phys 110:3061-3076. doi: 10.1080/00268976.2012.695811
    • (2012) Mol Phys , vol.110 , pp. 3061-3076
    • Liao, M.-S.1    Huang, M.-J.2    Watts, J.D.3
  • 48
    • 77951680464 scopus 로고    scopus 로고
    • A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu
    • 10.1063/1.3382344
    • Grimme S, Antony J, Ehrlich S, Krieg H (2010) A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu. J Chem Phys 132:154104-1-25
    • (2010) J Chem Phys , vol.132 , pp. 1541041-15410425
    • Grimme, S.1    Antony, J.2    Ehrlich, S.3    Krieg, H.4
  • 49
    • 79952943559 scopus 로고    scopus 로고
    • Effect of the damping function in dispersion corrected density functional theory
    • 10.1002/jcc.21759 1:CAS:528:DC%2BC3MXjsF2isL0%3D
    • Grimme S, Ehrlich S, Goerigk L (2011) Effect of the damping function in dispersion corrected density functional theory. J Comput Chem 32:1456-1465
    • (2011) J Comput Chem , vol.32 , pp. 1456-1465
    • Grimme, S.1    Ehrlich, S.2    Goerigk, L.3
  • 50
    • 80755185211 scopus 로고    scopus 로고
    • Comprehensive benchmarking of a density- dependent dispersion correction
    • 10.1021/ct200602x 1:CAS:528:DC%2BC3MXhtlaqsb%2FE
    • Steinmann SN, Corminboeuf C (2011) Comprehensive benchmarking of a density- dependent dispersion correction. J Chem Theory Comput 7:3567-3577
    • (2011) J Chem Theory Comput , vol.7 , pp. 3567-3577
    • Steinmann, S.N.1    Corminboeuf, C.2
  • 51
    • 0024519403 scopus 로고
    • Discrimination between oxygen and carbon monoxide and inhibition of autooxidation by myoglobin. Site-directed mutagenesis of the distal histidine
    • 1:CAS:528:DyaL1MXhsFSjtbc%3D
    • Springer BA, Egeberg KD, Slighar SG, Rohlfs RJ, Mathews AJ, Olson JC (1989) Discrimination between oxygen and carbon monoxide and inhibition of autooxidation by myoglobin. Site-directed mutagenesis of the distal histidine. J Biol Chem 264:3057-3060
    • (1989) J Biol Chem , vol.264 , pp. 3057-3060
    • Springer, B.A.1    Egeberg, K.D.2    Slighar, S.G.3    Rohlfs, R.J.4    Mathews, A.J.5    Olson, J.C.6
  • 52
    • 57249092727 scopus 로고    scopus 로고
    • 2 to heme by density functional and multireference ab initio calculations
    • 10.1021/jp806075b 1:CAS:528:DC%2BD1cXht1yitbnF
    • 2 to heme by density functional and multireference ab initio calculations. J Phys Chem A 112:11824-11832
    • (2008) J Phys Chem A , vol.112 , pp. 11824-11832
    • Radon, M.1    Pierloot, K.2
  • 53
    • 33847085494 scopus 로고
    • Isocyanide binding to chelated protoheme. Kinetic criteria for distal steric effects in hemoproteins
    • 10.1021/ja00538a054 1:CAS:528:DyaL3cXlsVCqsbk%3D
    • Traylor TG, Stynes DV (1980) Isocyanide binding to chelated protoheme. Kinetic criteria for distal steric effects in hemoproteins. J Am Chem Soc 102:5938-5939
    • (1980) J Am Chem Soc , vol.102 , pp. 5938-5939
    • Traylor, T.G.1    Stynes, D.V.2
  • 54
    • 33750559983 scopus 로고    scopus 로고
    • Semiempirical GGA-type density functional constructed with a long-range dispersion correction
    • 10.1002/jcc.20495 1:CAS:528:DC%2BD28XhtFenu7bO
    • Grimme S (2006) Semiempirical GGA-type density functional constructed with a long-range dispersion correction. J Comput Chem 27:1787-1799
    • (2006) J Comput Chem , vol.27 , pp. 1787-1799
    • Grimme, S.1
  • 56
    • 77956335730 scopus 로고    scopus 로고
    • Iron porphyrins with different imidazole ligands - A theoretical comparative study
    • 10.1021/jp1052216 1:CAS:528:DC%2BC3cXhtVeiu7jF
    • Liao M-S, Huang M-J, Watts JD (2010) Iron porphyrins with different imidazole ligands - a theoretical comparative study. J Phys Chem A 114:9554-9569
    • (2010) J Phys Chem A , vol.114 , pp. 9554-9569
    • Liao, M.-S.1    Huang, M.-J.2    Watts, J.D.3
  • 57
    • 0027368854 scopus 로고
    • High-resolution crystal structures of distal histidine mutants of sperm whale myoglobin
    • 10.1006/jmbi.1993.1569 1:CAS:528:DyaK2cXkvVertA%3D%3D
    • Quillin ML, Arduini RM, Olson JS, Phillips GN (1993) High-resolution crystal structures of distal histidine mutants of sperm whale myoglobin. J Mol Biol 234:140-155
    • (1993) J Mol Biol , vol.234 , pp. 140-155
    • Quillin, M.L.1    Arduini, R.M.2    Olson, J.S.3    Phillips, G.N.4
  • 59
    • 33845883717 scopus 로고    scopus 로고
    • ADF2012.01 Vrije Universiteit, Amsterdam, Netherlands. See also (http://www.scm.com)
    • ADF2012.01. SCM, Theoretical Chemistry, Vrije Universiteit, Amsterdam, Netherlands. See also (http://www.scm.com)
    • SCM, Theoretical Chemistry
  • 60
    • 4243553426 scopus 로고
    • Density-functional exchange-energy approximation with correct asymptotic behavior
    • 10.1103/PhysRevA.38.3098 1:CAS:528:DyaL1cXmtlOhsLo%3D
    • Becke AD (1988) Density-functional exchange-energy approximation with correct asymptotic behavior. Phys Rev A 38:3098-3100
    • (1988) Phys Rev A , vol.38 , pp. 3098-3100
    • Becke, A.D.1
  • 61
    • 5944261746 scopus 로고
    • Density-functional approximation for the correlation energy of the inhomogeneous electron gas
    • 10.1103/PhysRevB.33.8822
    • Perdew JP (1986) Density-functional approximation for the correlation energy of the inhomogeneous electron gas. Phys Rev B 33:8822-8824
    • (1986) Phys Rev B , vol.33 , pp. 8822-8824
    • Perdew, J.P.1
  • 62
    • 4243943295 scopus 로고    scopus 로고
    • Generalized gradient approximation made simple
    • 10.1103/PhysRevLett.77.3865 1:CAS:528:DyaK28XmsVCgsbs%3D
    • Perdew JP, Burke K, Ernzerhof M (1996) Generalized gradient approximation made simple. Phys Rev Lett 77:3865-3868
    • (1996) Phys Rev Lett , vol.77 , pp. 3865-3868
    • Perdew, J.P.1    Burke, K.2    Ernzerhof, M.3
  • 63
    • 85029400214 scopus 로고    scopus 로고
    • Comment on "generalized gradient approximation made simple
    • 10.1103/PhysRevLett.80.890 1:CAS:528:DyaK1cXlsV2itg%3D%3D
    • Zhang Y-K, Yang W-T (1998) Comment on "Generalized gradient approximation made simple". Phys Rev Lett 80:890-890
    • (1998) Phys Rev Lett , vol.80 , pp. 890-890
    • Zhang, Y.-K.1    Yang, W.-T.2
  • 64
    • 0000189651 scopus 로고
    • Density-functional thermochemistry.3. The role of exact exchange
    • 10.1063/1.464913 1:CAS:528:DyaK3sXisVWgtrw%3D
    • Becke AD (1993) Density-functional thermochemistry.3. The role of exact exchange. J Chem Phys 98:5648-5652
    • (1993) J Chem Phys , vol.98 , pp. 5648-5652
    • Becke, A.D.1
  • 65
    • 0345491105 scopus 로고
    • Development of the colle-salvetti correlation-energy formula into a functional of the electron-density
    • 10.1103/PhysRevB.37.785 1:CAS:528:DyaL1cXktFWrtbw%3D
    • Lee C, Yang WT, Parr RG (1988) Development of the colle-salvetti correlation-energy formula into a functional of the electron-density. Phys Rev B 37:785-789
    • (1988) Phys Rev B , vol.37 , pp. 785-789
    • Lee, C.1    Yang, W.T.2    Parr, R.G.3
  • 67
    • 77951110624 scopus 로고    scopus 로고
    • Van der Waals interactions in density-functional theory: Intermolecular complexes
    • 10.1021/ct900699r 1:CAS:528:DC%2BC3cXjvFequro%3D
    • Kannemann FO, Becke AD (2010) van der Waals interactions in density-functional theory: intermolecular complexes. J Chem Theory Comput 6:1081-1088
    • (2010) J Chem Theory Comput , vol.6 , pp. 1081-1088
    • Kannemann, F.O.1    Becke, A.D.2
  • 68
    • 36549091857 scopus 로고
    • An improved simple model for the van der Waals potential based on universal damping functions for the dispersion coefficients
    • 10.1063/1.447150 1:CAS:528:DyaL2cXitFGltLg%3D
    • Tang KT, Toennies JP (1984) An improved simple model for the van der Waals potential based on universal damping functions for the dispersion coefficients. J Chem Phys 80:3726-3741
    • (1984) J Chem Phys , vol.80 , pp. 3726-3741
    • Tang, K.T.1    Toennies, J.P.2
  • 69
    • 42649136199 scopus 로고    scopus 로고
    • The role of dispersion correction to DFT for modelling weakly bound molecular complexes in the ground and excited electronic states
    • 10.1016/j.chemphys.2008.02.036 1:CAS:528:DC%2BD1cXls1SrtbY%3D
    • Barone V, Biczysko M, Pavone M (2008) The role of dispersion correction to DFT for modelling weakly bound molecular complexes in the ground and excited electronic states. Chem Phys 346:247-256
    • (2008) Chem Phys , vol.346 , pp. 247-256
    • Barone, V.1    Biczysko, M.2    Pavone, M.3
  • 70
    • 0344178884 scopus 로고
    • Calculation of bond energies in compounds of heavy elements by a quasi-relativistic approach
    • 10.1021/j100345a036 1:CAS:528:DyaL1MXhs1Smsrc%3D
    • Ziegler T, Tschinke V, Baerends EJ, Snijders JG, Ravenek W (1989) Calculation of bond energies in compounds of heavy elements by a quasi-relativistic approach. J Phys Chem 93:3050-3056
    • (1989) J Phys Chem , vol.93 , pp. 3050-3056
    • Ziegler, T.1    Tschinke, V.2    Baerends, E.J.3    Snijders, J.G.4    Ravenek, W.5
  • 71
    • 0000564803 scopus 로고
    • Models for the active site of oxygen-binding hemoproteins. Dioxygen binding properties and the structures of (2-methylimidazole)-meso-tetra(alpha, alpha, alpha, alpha-o- pivalamidophenyl)porphyrinatoiron(II)-ethanol and its dioxygen adduct
    • 10.1021/ja00529a055 1:CAS:528:DyaL3cXkt1WisLg%3D
    • Jameson GB, Molinaro FS, Ibers JA, Collman JP, Brauman JI, Rose E, Suslick KS (1980) Models for the active site of oxygen-binding hemoproteins. Dioxygen binding properties and the structures of (2-methylimidazole)-meso- tetra(alpha, alpha, alpha, alpha-o- pivalamidophenyl)porphyrinatoiron(II)- ethanol and its dioxygen adduct. J Am Chem Soc 102:3224-3237
    • (1980) J Am Chem Soc , vol.102 , pp. 3224-3237
    • Jameson, G.B.1    Molinaro, F.S.2    Ibers, J.A.3    Collman, J.P.4    Brauman, J.I.5    Rose, E.6    Suslick, K.S.7
  • 72
    • 55849117399 scopus 로고    scopus 로고
    • Long-range corrected hybrid density functionals with damped atom-atom dispersion corrections
    • 10.1039/b810189b 1:CAS:528:DC%2BD1cXhtlCksbfO
    • Chai J-D, Head-Gordon M (2008) Long-range corrected hybrid density functionals with damped atom-atom dispersion corrections. Phys Chem Chem Phys 10:6615-6620
    • (2008) Phys Chem Chem Phys , vol.10 , pp. 6615-6620
    • Chai, J.-D.1    Head-Gordon, M.2


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