-
1
-
-
0023460915
-
Sequence and expression of a gene encoding an albumin storage protein in sunflower
-
Allen, R.D., Cohen, E.A., Vonder Haar, R.A., Adams, C.A., Ma, D.P., Nessler, C.L., and Thomas, T.L. (1987). Sequence and expression of a gene encoding an albumin storage protein in sunflower. Mol. Gen. Genet. 210: 211-218.
-
(1987)
Mol. Gen. Genet.
, vol.210
, pp. 211-218
-
-
Allen, R.D.1
Cohen, E.A.2
Vonder Haar, R.A.3
Adams, C.A.4
Ma, D.P.5
Nessler, C.L.6
Thomas, T.L.7
-
2
-
-
84864434718
-
ExPASy: SIB bioinformatics resource portal
-
Artimo, P., et al. (2012). ExPASy: SIB bioinformatics resource portal. Nucleic Acids Res. 40: W597-W603.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Artimo, P.1
-
3
-
-
0027551083
-
Proteinase inhibitors in Nicotiana alata stigmas are derived from a precursor protein which is processed into five homologous inhibitors
-
Atkinson, A.H., Heath, R.L., Simpson, R.J., Clarke, A.E., and Anderson, M.A. (1993). Proteinase inhibitors in Nicotiana alata stigmas are derived from a precursor protein which is processed into five homologous inhibitors. Plant Cell 5: 203-213.
-
(1993)
Plant Cell
, vol.5
, pp. 203-213
-
-
Atkinson, A.H.1
Heath, R.L.2
Simpson, R.J.3
Clarke, A.E.4
Anderson, M.A.5
-
4
-
-
77951256896
-
Fossil pollen indicates an explosive radiation of basal Asteracean lineages and allied families during Oligocene and Miocene times in the Southern Hemisphere
-
Barreda, V., Palazzesi, L., Tellería, M.C., Katinas, L., and Crisci, J.V. (2010). Fossil pollen indicates an explosive radiation of basal Asteracean lineages and allied families during Oligocene and Miocene times in the Southern Hemisphere. Rev. Palaeobot. Palynol. 160: 102-110.
-
(2010)
Rev. Palaeobot. Palynol.
, vol.160
, pp. 102-110
-
-
Barreda, V.1
Palazzesi, L.2
Tellería, M.C.3
Katinas, L.4
Crisci, J.V.5
-
5
-
-
0022017412
-
The Bowman-Birk inhibitor. Trypsin-and chymotrypsininhibitor from soybeans
-
Birk, Y. (1985). The Bowman-Birk inhibitor. Trypsin-and chymotrypsininhibitor from soybeans. Int. J. Pept. Protein Res. 25: 113-131.
-
(1985)
Int. J. Pept. Protein Res.
, vol.25
, pp. 113-131
-
-
Birk, Y.1
-
6
-
-
73449106108
-
The give-and-take of DNA: Horizontal gene transfer in plants
-
Bock, R. (2010). The give-and-take of DNA: Horizontal gene transfer in plants. Trends Plant Sci. 15: 11-22.
-
(2010)
Trends Plant Sci.
, vol.15
, pp. 11-22
-
-
Bock, R.1
-
7
-
-
0026953522
-
Identification and characterization of a fulllength cDNA encoding for an auxin-induced 1-aminocyclopropane-1-carboxylate synthase from etiolated mung bean hypocotyl segments and expression of its mRNA in response to indole-3-acetic acid
-
Botella, J.R., Arteca, J.M., Schlagnhaufer, C.D., Arteca, R.N., and Phillips, A.T. (1992). Identification and characterization of a fulllength cDNA encoding for an auxin-induced 1-aminocyclopropane-1-carboxylate synthase from etiolated mung bean hypocotyl segments and expression of its mRNA in response to indole-3-acetic acid. Plant Mol. Biol. 20: 425-436.
-
(1992)
Plant Mol. Biol.
, vol.20
, pp. 425-436
-
-
Botella, J.R.1
Arteca, J.M.2
Schlagnhaufer, C.D.3
Arteca, R.N.4
Phillips, A.T.5
-
8
-
-
33745212250
-
A sunflower BAC library suitable for PCR screening and physical mapping of targeted genomic regions
-
Bouzidi, M.F., Franchel, J., Tao, Q., Stormo, K., Mraz, A., Nicolas, P., and Mouzeyar, S. (2006). A sunflower BAC library suitable for PCR screening and physical mapping of targeted genomic regions. Theor. Appl. Genet. 113: 81-89.
-
(2006)
Theor. Appl. Genet.
, vol.113
, pp. 81-89
-
-
Bouzidi, M.F.1
Franchel, J.2
Tao, Q.3
Stormo, K.4
Mraz, A.5
Nicolas, P.6
Mouzeyar, S.7
-
9
-
-
50649090652
-
De novo origination of a new protein-coding gene in Saccharomyces cerevisiae
-
Cai, J., Zhao, R., Jiang, H., and Wang, W. (2008). De novo origination of a new protein-coding gene in Saccharomyces cerevisiae. Genetics 179: 487-496.
-
(2008)
Genetics
, vol.179
, pp. 487-496
-
-
Cai, J.1
Zhao, R.2
Jiang, H.3
Wang, W.4
-
10
-
-
84863988094
-
Proto-genes and de novo gene birth
-
Carvunis, A.-R., et al. (2012). Proto-genes and de novo gene birth. Nature 487: 370-374.
-
(2012)
Nature
, vol.487
, pp. 370-374
-
-
Carvunis, A.-R.1
-
11
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography. Acta Crystallogr
-
and Richardson, D. C
-
Chen, V.B., Arendall, W.B., III., Headd, J.J., Keedy, D.A., Immormino, R.M., Kapral, G.J., Murray, L.W., Richardson, J.S., and Richardson, D.C. (2010). MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 66: 12-21.
-
(2010)
D Biol. Crystallogr.
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall III, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
-
12
-
-
0035106757
-
Sialidase-like Asp-boxes: Sequence-similar structures within different protein folds
-
Copley, R.R., Russell, R.B., and Ponting, C.P. (2001). Sialidase-like Asp-boxes: Sequence-similar structures within different protein folds. Protein Sci. 10: 285-292.
-
(2001)
Protein Sci.
, vol.10
, pp. 285-292
-
-
Copley, R.R.1
Russell, R.B.2
Ponting, C.P.3
-
13
-
-
31544481160
-
Kalata B8, a novel antiviral circular protein, exhibits conformational flexibility in the cystine knot motif
-
Daly, N.L., Clark, R.J., Plan, M.R., and Craik, D.J. (2006). Kalata B8, a novel antiviral circular protein, exhibits conformational flexibility in the cystine knot motif. Biochem. J. 393: 619-626.
-
(2006)
Biochem. J.
, vol.393
, pp. 619-626
-
-
Daly, N.L.1
Clark, R.J.2
Plan, M.R.3
Craik, D.J.4
-
14
-
-
3442897333
-
Host-to-parasite gene transfer in flowering plants: Phylogenetic evidence from Malpighiales
-
Davis, C.C., and Wurdack, K.J. (2004). Host-to-parasite gene transfer in flowering plants: Phylogenetic evidence from Malpighiales. Science 305: 676-678.
-
(2004)
Science
, vol.305
, pp. 676-678
-
-
Davis, C.C.1
Wurdack, K.J.2
-
15
-
-
79951566081
-
Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana
-
Donoghue, M.T., Keshavaiah, C., Swamidatta, S.H., and Spillane, C. (2011). Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana. BMC Evol. Biol. 11: 47.
-
(2011)
BMC Evol. Biol.
, vol.11
, pp. 47
-
-
Donoghue, M.T.1
Keshavaiah, C.2
Swamidatta, S.H.3
Spillane, C.4
-
16
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond, A.J., and Rambaut, A. (2007). BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7: 214.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
17
-
-
77956988073
-
Coexpression of potato type I and II proteinase inhibitors gives cotton plants protection against insect damage in the field
-
Dunse, K.M., Stevens, J.A., Lay, F.T., Gaspar, Y.M., Heath, R.L., and Anderson, M.A. (2010). Coexpression of potato type I and II proteinase inhibitors gives cotton plants protection against insect damage in the field. Proc. Natl. Acad. Sci. USA 107: 15011-15015.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 15011-15015
-
-
Dunse, K.M.1
Stevens, J.A.2
Lay, F.T.3
Gaspar, Y.M.4
Heath, R.L.5
Anderson, M.A.6
-
18
-
-
50549163362
-
The preparation and properties of two new chromogenic substrates of trypsin
-
Erlanger, B.F., Kokowsky, N., and Cohen, W. (1961). The preparation and properties of two new chromogenic substrates of trypsin. Arch. Biochem. Biophys. 95: 271-278.
-
(1961)
Arch. Biochem. Biophys.
, vol.95
, pp. 271-278
-
-
Erlanger, B.F.1
Kokowsky, N.2
Cohen, W.3
-
19
-
-
0014690410
-
Inhibition of human trypsin, plasmin, and thrombin by naturally occurring inhibitors of proteolytic enzymes
-
Feeney, R.E., Means, G.E., and Bigler, J.C. (1969). Inhibition of human trypsin, plasmin, and thrombin by naturally occurring inhibitors of proteolytic enzymes. J. Biol. Chem. 244: 1957-1960.
-
(1969)
J. Biol. Chem.
, vol.244
, pp. 1957-1960
-
-
Feeney, R.E.1
Means, G.E.2
Bigler, J.C.3
-
20
-
-
84860138819
-
Evolution of protein domain architectures
-
In M. Anisimova, ed (Totowa, NJ: Humana Press)
-
Forslund, K., and Sonnhammer, E.L. (2012). Evolution of protein domain architectures. In Evolutionary Genomics, M. Anisimova, ed (Totowa, NJ: Humana Press), pp. 187-216.
-
(2012)
Evolutionary Genomics
, pp. 187-216
-
-
Forslund, K.1
Sonnhammer, E.L.2
-
21
-
-
17544367678
-
Convergent evolution of domain architectures (is rare)
-
Gough, J. (2005). Convergent evolution of domain architectures (is rare). Bioinformatics 21: 1464-1471.
-
(2005)
Bioinformatics
, vol.21
, pp. 1464-1471
-
-
Gough, J.1
-
22
-
-
0035783063
-
Fold change in evolution of protein structures
-
Grishin, N.V. (2001). Fold change in evolution of protein structures. J. Struct. Biol. 134: 167-185.
-
(2001)
J. Struct. Biol.
, vol.134
, pp. 167-185
-
-
Grishin, N.V.1
-
23
-
-
0842334760
-
Storage protein accumulation in the absence of the vacuolar processing enzyme family of cysteine proteases
-
Gruis, D., Schulze, J., and Jung, R. (2004). Storage protein accumulation in the absence of the vacuolar processing enzyme family of cysteine proteases. Plant Cell 16: 270-290.
-
(2004)
Plant Cell
, vol.16
, pp. 270-290
-
-
Gruis, D.1
Schulze, J.2
Jung, R.3
-
24
-
-
4644340524
-
Automated NMR structure calculation with CYANA
-
In A.K. Downing, ed (Totowa, NJ: Humana Press)
-
Güntert, P. (2004). Automated NMR structure calculation with CYANA. In Protein NMR Techniques, A.K. Downing, ed (Totowa, NJ: Humana Press), pp. 353-378.
-
(2004)
Protein NMR Techniques
, pp. 353-378
-
-
Güntert, P.1
-
25
-
-
0027692821
-
Vesicle transport and processing of the precursor to 2S albumin in pumpkin
-
Hara-Hishimura, I., Takeuchi, Y., Inoue, K., and Nishimura, M. (1993). Vesicle transport and processing of the precursor to 2S albumin in pumpkin. Plant J. 4: 793-800.
-
(1993)
Plant J.
, vol.4
, pp. 793-800
-
-
Hara-Hishimura, I.1
Takeuchi, Y.2
Inoue, K.3
Nishimura, M.4
-
26
-
-
79551632556
-
Serine protease inhibitors specifically defend Solanum nigrum against generalist herbivores but do not influence plant growth and development
-
Hartl, M., Giri, A.P., Kaur, H., and Baldwin, I.T. (2010). Serine protease inhibitors specifically defend Solanum nigrum against generalist herbivores but do not influence plant growth and development. Plant Cell 22: 4158-4175.
-
(2010)
Plant Cell
, vol.22
, pp. 4158-4175
-
-
Hartl, M.1
Giri, A.P.2
Kaur, H.3
Baldwin, I.T.4
-
27
-
-
0030039296
-
PROMOTIF-A program to identify and analyze structural motifs in proteins
-
Hutchinson, E.G., and Thornton, J.M. (1996). PROMOTIF-A program to identify and analyze structural motifs in proteins. Protein Sci. 5: 212-220.
-
(1996)
Protein Sci.
, vol.5
, pp. 212-220
-
-
Hutchinson, E.G.1
Thornton, J.M.2
-
28
-
-
84863507534
-
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
-
Kearse, M., et al. (2012). Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28: 1647-1649.
-
(2012)
Bioinformatics
, vol.28
, pp. 1647-1649
-
-
Kearse, M.1
-
29
-
-
47649104484
-
Horizontal gene transfer in eukaryotic evolution
-
Keeling, P.J., and Palmer, J.D. (2008). Horizontal gene transfer in eukaryotic evolution. Nat. Rev. Genet. 9: 605-618.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 605-618
-
-
Keeling, P.J.1
Palmer, J.D.2
-
30
-
-
23944506347
-
Two chloroplast DNA inversions originated simultaneously during the early evolution of the sunflower family (Asteraceae)
-
Kim, K.-J., Choi, K.-S., and Jansen, R.K. (2005). Two chloroplast DNA inversions originated simultaneously during the early evolution of the sunflower family (Asteraceae). Mol. Biol. Evol. 22: 1783-1792.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1783-1792
-
-
Kim, K.-J.1
Choi, K.-S.2
Jansen, R.K.3
-
31
-
-
0037138272
-
Serine proteinase inhibitors in the Compositae: Distribution, polymorphism and properties
-
Konarev, A.V., Anisimova, I.N., Gavrilova, V.A., Vachrusheva, T.E., Konechnaya, G.Y., Lewis, M., and Shewry, P.R. (2002). Serine proteinase inhibitors in the Compositae: Distribution, polymorphism and properties. Phytochemistry 59: 279-291.
-
(2002)
Phytochemistry
, vol.59
, pp. 279-291
-
-
Konarev, A.V.1
Anisimova, I.N.2
Gavrilova, V.A.3
Vachrusheva, T.E.4
Konechnaya, G.Y.5
Lewis, M.6
Shewry, P.R.7
-
32
-
-
0035902766
-
Solution structures by 1H NMR of the novel cyclic trypsin inhibitor SFTI-1 from sunflower seeds and an acyclic permutant
-
Korsinczky, M.L., Schirra, H.J., Rosengren, K.J., West, J., Condie, B.A., Otvos, L., Anderson, M.A., and Craik, D.J. (2001). Solution structures by 1H NMR of the novel cyclic trypsin inhibitor SFTI-1 from sunflower seeds and an acyclic permutant. J. Mol. Biol. 311: 579-591.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 579-591
-
-
Korsinczky, M.L.1
Schirra, H.J.2
Rosengren, K.J.3
West, J.4
Condie, B.A.5
Otvos, L.6
Anderson, M.A.7
Craik, D.J.8
-
33
-
-
0026029034
-
Amino acid and cDNA sequences of a methionine-rich 2S protein from sunflower seed (Helianthus annuus L.)
-
Kortt, A.A., Caldwell, J.B., Lilley, G.G., and Higgins, T.J.V. (1991). Amino acid and cDNA sequences of a methionine-rich 2S protein from sunflower seed (Helianthus annuus L.). Eur. J. Biochem. 195: 329-334.
-
(1991)
Eur. J. Biochem.
, vol.195
, pp. 329-334
-
-
Kortt, A.A.1
Caldwell, J.B.2
Lilley, G.G.3
Higgins, T.J.V.4
-
34
-
-
0024689426
-
Unusual features of cereal seed protein structure and evolution
-
Kreis, M., and Shewry, P.R. (1989). Unusual features of cereal seed protein structure and evolution. Bioessays 10: 201-207.
-
(1989)
Bioessays
, vol.10
, pp. 201-207
-
-
Kreis, M.1
Shewry, P.R.2
-
35
-
-
0030666211
-
Convergent evolution of apolipoprotein(a) in primates and hedgehog
-
Lawn, R.M., Schwartz, K., and Patthy, L. (1997). Convergent evolution of apolipoprotein(a) in primates and hedgehog. Proc. Natl. Acad. Sci. USA 94: 11992-11997.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 11992-11997
-
-
Lawn, R.M.1
Schwartz, K.2
Patthy, L.3
-
36
-
-
33745585334
-
Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression
-
Levine, M.T., Jones, C.D., Kern, A.D., Lindfors, H.A., and Begun, D. J. (2006). Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression. Proc. Natl. Acad. Sci. USA 103: 9935-9939.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 9935-9939
-
-
Levine, M.T.1
Jones, C.D.2
Kern, A.D.3
Lindfors, H.A.4
Begun, D.J.5
-
37
-
-
34547753063
-
Trypsin inhibitory loop is an excellent lead structure to design serine protease inhibitors and antimicrobial peptides
-
Li, J., Zhang, C., Xu, X., Wang, J., Yu, H., Lai, R., and Gong, W. (2007). Trypsin inhibitory loop is an excellent lead structure to design serine protease inhibitors and antimicrobial peptides. FASEB J. 21: 2466-2473.
-
(2007)
FASEB J.
, vol.21
, pp. 2466-2473
-
-
Li, J.1
Zhang, C.2
Xu, X.3
Wang, J.4
Yu, H.5
Lai, R.6
Gong, W.7
-
38
-
-
0344655676
-
High-resolution structure of a potent, cyclic proteinase inhibitor from sunflower seeds
-
Luckett, S., Garcia, R.S., Barker, J.J., Konarev, A.V., Shewry, P.R., Clarke, A.R., and Brady, R.L. (1999). High-resolution structure of a potent, cyclic proteinase inhibitor from sunflower seeds. J. Mol. Biol. 290: 525-533.
-
(1999)
J. Mol. Biol.
, vol.290
, pp. 525-533
-
-
Luckett, S.1
Garcia, R.S.2
Barker, J.J.3
Konarev, A.V.4
Shewry, P.R.5
Clarke, A.R.6
Brady, R.L.7
-
39
-
-
0035783055
-
On the evolution of protein folds: Are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world? J
-
Lupas, A.N., Ponting, C.P., and Russell, R.B. (2001). On the evolution of protein folds: Are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world? J. Struct. Biol. 134: 191-203.
-
(2001)
Struct. Biol.
, vol.134
, pp. 191-203
-
-
Lupas, A.N.1
Ponting, C.P.2
Russell, R.B.3
-
40
-
-
78751558547
-
Creating the CIPRES Science Gateway for inference of large phylogenetic trees
-
In (Institute of Electrical and Electronics Engineers)
-
Miller, M.A., Pfeiffer, W., and Schwartz, T. (2010). Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In 2010 Gateway Computing Environments Workshop (GCE 2010), (Institute of Electrical and Electronics Engineers), pp. 1-8.
-
(2010)
2010 Gateway Computing Environments Workshop (GCE 2010)
, pp. 1-8
-
-
Miller, M.A.1
Pfeiffer, W.2
Schwartz, T.3
-
41
-
-
84865320400
-
Cyclic peptides arising by evolutionary parallelism via asparaginylendopeptidase-mediated biosynthesis
-
Mylne, J.S., Chan, L.Y., Chanson, A.H., Daly, N.L., Schaefer, H., Bailey, T.L., Nguyencong, P., Cascales, L., and Craik, D.J. (2012). Cyclic peptides arising by evolutionary parallelism via asparaginylendopeptidase-mediated biosynthesis. Plant Cell 24: 2765-2778.
-
(2012)
Plant Cell
, vol.24
, pp. 2765-2778
-
-
Mylne, J.S.1
Chan, L.Y.2
Chanson, A.H.3
Daly, N.L.4
Schaefer, H.5
Bailey, T.L.6
Nguyencong, P.7
Cascales, L.8
Craik, D.J.9
-
42
-
-
79955058492
-
Albumins and their processing machinery are hijacked for cyclic peptides in sunflower
-
Mylne, J.S., Colgrave, M.L., Daly, N.L., Chanson, A.H., Elliott, A.G., McCallum, E.J., Jones, A., and Craik, D.J. (2011). Albumins and their processing machinery are hijacked for cyclic peptides in sunflower. Nat. Chem. Biol. 7: 257-259.
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 257-259
-
-
Mylne, J.S.1
Colgrave, M.L.2
Daly, N.L.3
Chanson, A.H.4
Elliott, A.G.5
McCallum, E.J.6
Jones, A.7
Craik, D.J.8
-
43
-
-
84874013460
-
Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution
-
Neme, R., and Tautz, D. (2013). Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution. BMC Genomics 14: 117.
-
(2013)
BMC Genomics
, vol.14
, pp. 117
-
-
Neme, R.1
Tautz, D.2
-
44
-
-
0031972161
-
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
-
Nielsen, R., and Yang, Z. (1998). Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148: 929-936.
-
(1998)
Genetics
, vol.148
, pp. 929-936
-
-
Nielsen, R.1
Yang, Z.2
-
45
-
-
0021323335
-
Birth of a unique enzyme from an alternative reading frame of the preexisted, internally repetitious coding sequence
-
Ohno, S. (1984). Birth of a unique enzyme from an alternative reading frame of the preexisted, internally repetitious coding sequence. Proc. Natl. Acad. Sci. USA 81: 2421-2425.
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 2421-2425
-
-
Ohno, S.1
-
46
-
-
41849137212
-
Compositae: Key to the tribes of the Heliantheae alliance
-
In J.W. Kadereit and C. Jeffrey, eds (Berlin: Springer-Verlag)
-
Panero, J.L. (2007). Compositae: Key to the tribes of the Heliantheae alliance. In Flowering Plants, Eudicots, Asterales, J.W. Kadereit and C. Jeffrey, eds (Berlin: Springer-Verlag), pp. 391-395.
-
(2007)
Flowering Plants, Eudicots, Asterales
, pp. 391-395
-
-
Panero, J.L.1
-
47
-
-
84883429374
-
Viral proteins originated de novo by overprinting can be identified by codon usage: Application to the "gene nursery" of Deltaretroviruses
-
Pavesi, A., Magiorkinis, G., andKarlin, D.G. (2013). Viral proteins originated de novo by overprinting can be identified by codon usage: application to the "gene nursery" of Deltaretroviruses. PLOS Comput. Biol. 9: e1003162.
-
(2013)
PLOS Comput. Biol.
, vol.9
-
-
Pavesi, A.1
Magiorkinis, G.2
Karlin, D.G.3
-
49
-
-
77649179582
-
Evolution of Conus peptide genes: Duplication and positive selection in the Asuperfamily
-
Puillandre, N., Watkins, M., and Olivera, B.M. (2010). Evolution of Conus peptide genes: Duplication and positive selection in the Asuperfamily. J. Mol. Evol. 70: 190-202.
-
(2010)
J. Mol. Evol.
, vol.70
, pp. 190-202
-
-
Puillandre, N.1
Watkins, M.2
Olivera, B.M.3
-
50
-
-
0032568531
-
Unexpected homology between inducible cell wall protein QID74 of filamentous fungi and BR3 salivary protein of the insect Chironomus
-
Rey, M., Ohno, S., Pintor-Toro, J.A., Llobell, A., and Benitez, T. (1998). Unexpected homology between inducible cell wall protein QID74 of filamentous fungi and BR3 salivary protein of the insect Chironomus. Proc. Natl. Acad. Sci. USA 95: 6212-6216.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 6212-6216
-
-
Rey, M.1
Ohno, S.2
Pintor-Toro, J.A.3
Llobell, A.4
Benitez, T.5
-
51
-
-
84890824581
-
Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella
-
Rice, D.W., Alverson, A.J., Richardson, A.O., Young, G.J., Sanchez-Puerta, M.V., Munzinger, J., Barry, K., Boore, J.L., Zhang, Y., dePamphilis, C.W., Knox, E.B., and Palmer, J.D. (2013). Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella. Science 342: 1468-1473.
-
(2013)
Science
, vol.342
, pp. 1468-1473
-
-
Rice, D.W.1
Alverson, A.J.2
Richardson, A.O.3
Young, G.J.4
Sanchez-Puerta, M.V.5
Munzinger, J.6
Barry, K.7
Boore, J.L.8
Zhang, Y.9
dePamphilis, C.W.10
Knox, E.B.11
Palmer, J.D.12
-
52
-
-
0033744203
-
The structure and organization of lamprin genes: Multiple-copy genes with alternative splicing and convergent evolution with insect structural proteins
-
Robson, P., Wright, G.M., Youson, J.H., and Keeley, F.W. (2000). The structure and organization of lamprin genes: Multiple-copy genes with alternative splicing and convergent evolution with insect structural proteins. Mol. Biol. Evol. 17: 1739-1752.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1739-1752
-
-
Robson, P.1
Wright, G.M.2
Youson, J.H.3
Keeley, F.W.4
-
53
-
-
79953288892
-
A high-throughput venom-gland transcriptome for the Eastern Diamondback Rattlesnake (Crotalus adamanteus) and evidence for pervasive positive selection across toxin classes
-
Rokyta, D.R., Wray, K.P., Lemmon, A.R., Lemmon, E.M., and Caudle, S.B. (2011). A high-throughput venom-gland transcriptome for the Eastern Diamondback Rattlesnake (Crotalus adamanteus) and evidence for pervasive positive selection across toxin classes. Toxicon 57: 657-671.
-
(2011)
Toxicon
, vol.57
, pp. 657-671
-
-
Rokyta, D.R.1
Wray, K.P.2
Lemmon, A.R.3
Lemmon, E.M.4
Caudle, S.B.5
-
54
-
-
0032568859
-
Detection of protein three-dimensional sidechain patterns: New examples of convergent evolution
-
Russell, R.B. (1998). Detection of protein three-dimensional sidechain patterns: New examples of convergent evolution. J. Mol. Biol. 279: 1211-1227.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 1211-1227
-
-
Russell, R.B.1
-
55
-
-
68349093958
-
TALOS+: A hybrid method for predicting protein backbone torsion angles from NMR chemical shifts
-
Shen, Y., Delaglio, F., Cornilescu, G., and Bax, A. (2009). TALOS+: A hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. J. Biomol. NMR 44: 213-223.
-
(2009)
J. Biomol. NMR
, vol.44
, pp. 213-223
-
-
Shen, Y.1
Delaglio, F.2
Cornilescu, G.3
Bax, A.4
-
56
-
-
0000078132
-
Enzyme inhibitors of seeds: Types and properties
-
In P. Shewry and R. Casey, eds (Dordrecht, The Netherlands: Kluwer)
-
Shewry, P. (1999). Enzyme inhibitors of seeds: Types and properties. In Seed Proteins, P. Shewry and R. Casey, eds (Dordrecht, The Netherlands: Kluwer), pp. 587-615.
-
(1999)
Seed Proteins
, pp. 587-615
-
-
Shewry, P.1
-
57
-
-
0002436454
-
The 2S albumin storage proteins
-
In P. Shewry and R. Casey, eds (Dordrecht, The Netherlands: Kluwer)
-
Shewry, P., and Pandya, M. (1999). The 2S albumin storage proteins. In Seed Proteins, P. Shewry and R. Casey, eds (Dordrecht, The Netherlands: Kluwer), pp. 563-586.
-
(1999)
Seed Proteins
, pp. 563-586
-
-
Shewry, P.1
Pandya, M.2
-
58
-
-
0042357049
-
Vacuolar processing enzymes are essential for proper processing of seed storage proteins in Arabidopsis thaliana
-
Shimada, T., et al. (2003). Vacuolar processing enzymes are essential for proper processing of seed storage proteins in Arabidopsis thaliana. J. Biol. Chem. 278: 32292-32299.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 32292-32299
-
-
Shimada, T.1
-
59
-
-
84872405473
-
The impact of ingested potato type II inhibitors on the production of the major serine proteases in the gut of Helicoverpa armigera
-
Stevens, J.A., Dunse, K.M., Guarino, R.F., Barbeta, B.L., Evans, S.C., West, J.A., and Anderson, M.A. (2013). The impact of ingested potato type II inhibitors on the production of the major serine proteases in the gut of Helicoverpa armigera. Insect Biochem. Mol. Biol. 43: 197-208.
-
(2013)
Insect Biochem. Mol. Biol.
, vol.43
, pp. 197-208
-
-
Stevens, J.A.1
Dunse, K.M.2
Guarino, R.F.3
Barbeta, B.L.4
Evans, S.C.5
West, J.A.6
Anderson, M.A.7
-
60
-
-
80052969570
-
The evolutionary origin of orphan genes
-
Tautz, D., and Domazet-Lošo, T. (2011). The evolutionary origin of orphan genes. Nat. Rev. Genet. 12: 692-702.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 692-702
-
-
Tautz, D.1
Domazet-Lošo, T.2
-
61
-
-
0002671410
-
Some probabilistic and statistical problems on the analysis of DNA sequences
-
Tavaré, S. (1986). Some probabilistic and statistical problems on the analysis of DNA sequences. Lect. Math Life Sci. 17: 57-86.
-
(1986)
Lect. Math Life Sci.
, vol.17
, pp. 57-86
-
-
Tavaré, S.1
-
62
-
-
33846536849
-
Evolution of proteomes: Fundamental signatures and global trends in amino acid compositions
-
Tekaia, F., and Yeramian, E. (2006). Evolution of proteomes: fundamental signatures and global trends in amino acid compositions. BMC Genomics 7: 307.
-
(2006)
BMC Genomics
, vol.7
, pp. 307
-
-
Tekaia, F.1
Yeramian, E.2
-
63
-
-
0030590145
-
Characterization of a sunflower seed albumin which associates with oil bodies
-
Thoyts, P.J.E., Napier, J.A., Millichip, M., Stobart, A.K., Griffiths, W.T., Tatham, A.S., and Shewry, P.R. (1996). Characterization of a sunflower seed albumin which associates with oil bodies. Plant Sci. 118: 119-125.
-
(1996)
Plant Sci.
, vol.118
, pp. 119-125
-
-
Thoyts, P.J.E.1
Napier, J.A.2
Millichip, M.3
Stobart, A.K.4
Griffiths, W.T.5
Tatham, A.S.6
Shewry, P.R.7
-
64
-
-
17244364283
-
Proteases universally recognize beta strands in their active sites
-
Tyndall, J.D.A., Nall, T., and Fairlie, D.P. (2005). Proteases universally recognize beta strands in their active sites. Chem. Rev. 105: 973-999.
-
(2005)
Chem. Rev.
, vol.105
, pp. 973-999
-
-
Tyndall, J.D.A.1
Nall, T.2
Fairlie, D.P.3
-
65
-
-
0025553059
-
NMR investigations of protein structure
-
Wagner, G. (1990). NMR investigations of protein structure. Prog. Nucl. Magn. Reson. Spectrosc. 22: 101-139.
-
(1990)
Prog. Nucl. Magn. Reson. Spectrosc.
, vol.22
, pp. 101-139
-
-
Wagner, G.1
-
66
-
-
84860009975
-
Accurate reconstruction of insertion-deletion histories by statistical phylogenetics
-
Westesson, O., Lunter, G., Paten, B., and Holmes, I. (2012). Accurate reconstruction of insertion-deletion histories by statistical phylogenetics. PLoS ONE 7: e34572.
-
(2012)
PLoS ONE
, vol.7
-
-
Westesson, O.1
Lunter, G.2
Paten, B.3
Holmes, I.4
-
67
-
-
0029181728
-
1H, 13C and 15N random coil NMR chemical shifts of the common amino acids. I. Investigations of nearest-neighbor effects
-
Wishart, D.S., Bigam, C.G., Holm, A., Hodges, R.S., and Sykes, B.D. (1995). 1H, 13C and 15N random coil NMR chemical shifts of the common amino acids. I. Investigations of nearest-neighbor effects. J. Biomol. NMR 5: 67-81.
-
(1995)
J. Biomol. NMR
, vol.5
, pp. 67-81
-
-
Wishart, D.S.1
Bigam, C.G.2
Holm, A.3
Hodges, R.S.4
Sykes, B.D.5
-
68
-
-
0141591517
-
Horizontal gene transfer from flowering plants to Gnetum
-
Won, H., and Renner, S.S. (2003). Horizontal gene transfer from flowering plants to Gnetum. Proc. Natl. Acad. Sci. USA 100: 10824-10829.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 10824-10829
-
-
Won, H.1
Renner, S.S.2
-
69
-
-
81755187310
-
De novo origin of human protein-coding genes
-
Wu, D.-D., Irwin, D.M., and Zhang, Y.-P. (2011). De novo origin of human protein-coding genes. PLoS Genet. 7: e1002379.
-
(2011)
PLoS Genet.
, vol.7
-
-
Wu, D.-D.1
Irwin, D.M.2
Zhang, Y.-P.3
-
71
-
-
0033593439
-
Multiple functional proteins are produced by cleaving Asn-Gln bonds of a single precursor by vacuolar processing enzyme
-
Yamada, K., Shimada, T., Kondo, M., Nishimura, M., and Hara-Nishimura, I. (1999). Multiple functional proteins are produced by cleaving Asn-Gln bonds of a single precursor by vacuolar processing enzyme. J. Biol. Chem. 274: 2563-2570.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 2563-2570
-
-
Yamada, K.1
Shimada, T.2
Kondo, M.3
Nishimura, M.4
Hara-Nishimura, I.5
-
72
-
-
77949513721
-
The evolutionary history of protein domains viewed by species phylogeny
-
Yang, S., and Bourne, P.E. (2009). The evolutionary history of protein domains viewed by species phylogeny. PLoS ONE 4: e8378.
-
(2009)
PLoS ONE
, vol.4
-
-
Yang, S.1
Bourne, P.E.2
-
73
-
-
0031897964
-
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
-
Yang, Z. (1998). Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol. Biol. Evol. 15: 568-573.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 568-573
-
-
Yang, Z.1
-
74
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang, Z. (2007). PAML 4: Phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24: 1586-1591.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
75
-
-
79951580190
-
De novo origin of new genes with introns in Plasmodium vivax
-
Yang, Z., and Huang, J. (2011). De novo origin of new genes with introns in Plasmodium vivax. FEBS Lett. 585: 641-644.
-
(2011)
FEBS Lett.
, vol.585
, pp. 641-644
-
-
Yang, Z.1
Huang, J.2
-
76
-
-
16344378246
-
Bayes empirical bayes inference of amino acid sites under positive selection
-
Yang, Z., Wong, W.S.W., and Nielsen, R. (2005). Bayes empirical bayes inference of amino acid sites under positive selection. Mol. Biol. Evol. 22: 1107-1118.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1107-1118
-
-
Yang, Z.1
Wong, W.S.W.2
Nielsen, R.3
-
77
-
-
77953003221
-
Horizontal gene transfer by the parasitic plant Striga hermonthica
-
Yoshida, S., Maruyama, S., Nozaki, H., and Shirasu, K. (2010). Horizontal gene transfer by the parasitic plant Striga hermonthica. Science 328: 1128.
-
(2010)
Science
, vol.328
, pp. 1128
-
-
Yoshida, S.1
Maruyama, S.2
Nozaki, H.3
Shirasu, K.4
|