-
1
-
-
44349131472
-
Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation
-
PMID:18488029
-
Kondo Y, Shen L, Cheng AS, Ahmed S, Boumber Y, Charo C, Yamochi T, Urano T, Furukawa K, Kwabi-Addo B, et al. Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation. Nat Genet 2008; 40:741-50; PMID:18488029; http://dx.doi.org/10.1038/ng.159
-
(2008)
Nat Genet
, vol.40
, pp. 741-750
-
-
Kondo, Y.1
Shen, L.2
Cheng, A.S.3
Ahmed, S.4
Boumber, Y.5
Charo, C.6
Yamochi, T.7
Urano, T.8
Furukawa, K.9
Kwabi-Addo, B.10
-
2
-
-
50849107031
-
Antagonism between DNA and H3K27 methylation at the imprinted Rasgrf1 locus
-
PMID:18670629
-
Lindroth AM, Park YJ, McLean CM, Dokshin GA, Persson JM, Herman H, Pasini D, Miró X, Donohoe ME, Lee JT, et al. Antagonism between DNA and H3K27 methylation at the imprinted Rasgrf1 locus. PLoS Genet 2008; 4:e1000145; PMID:18670629; http://dx.doi.org/10.1371/journal.pgen.1000145
-
(2008)
PLoS Genet
, vol.4
-
-
Lindroth, A.M.1
Park, Y.J.2
McLean, C.M.3
Dokshin, G.A.4
Persson, J.M.5
Herman, H.6
Pasini, D.7
Miró, X.8
Donohoe, M.E.9
Lee, J.T.10
-
3
-
-
70350069495
-
The presence of RNA polymerase II, active or stalled, predicts epigenetic fate of promoter CpG islands
-
PMID:19652013
-
Takeshima H, Yamashita S, Shimazu T, Niwa T, Ushijima T. The presence of RNA polymerase II, active or stalled, predicts epigenetic fate of promoter CpG islands. Genome Res 2009; 19:1974-82; PMID:19652013; http://dx.doi.org/10.1101/ gr.093310.109
-
(2009)
Genome Res
, vol.19
, pp. 1974-1982
-
-
Takeshima, H.1
Yamashita, S.2
Shimazu, T.3
Niwa, T.4
Ushijima, T.5
-
4
-
-
84861883921
-
Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk
-
PMID:22466170
-
Brinkman AB, Gu H, Bartels SJ, Zhang Y, Matarese F, Simmer F, Marks H, Bock C, Gnirke A, Meissner A, et al. Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk. Genome Res 2012; 22:1128-38; PMID:22466170; http://dx.doi. org/10.1101/gr.133728.111
-
(2012)
Genome Res
, vol.22
, pp. 1128-1138
-
-
Brinkman, A.B.1
Gu, H.2
Bartels, S.J.3
Zhang, Y.4
Matarese, F.5
Simmer, F.6
Marks, H.7
Bock, C.8
Gnirke, A.9
Meissner, A.10
-
5
-
-
84861916932
-
Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA
-
PMID:22466171
-
Statham AL, Robinson MD, Song JZ, Coolen MW, Stirzaker C, Clark SJ. Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA. Genome Res 2012; 22:1120-7; PMID:22466171; http://dx.doi.org/10.1101/gr.132076.111
-
(2012)
Genome Res
, vol.22
, pp. 1120-1127
-
-
Statham, A.L.1
Robinson, M.D.2
Song, J.Z.3
Coolen, M.W.4
Stirzaker, C.5
Clark, S.J.6
-
6
-
-
84875732221
-
DNA methylation associated with polycomb repression in retinoic acid receptor β silencing
-
PMID:23299856
-
Moison C, Senamaud-Beaufort C, Fourrière L, Champion C, Ceccaldi A, Lacomme S, Daunay A, Tost J, Arimondo PB, Guieysse-Peugeot AL. DNA methylation associated with polycomb repression in retinoic acid receptor β silencing. FASEB J 2013; 27:1468-78; PMID:23299856; http://dx.doi. org/10.1096/fj.12-210971
-
(2013)
FASEB J
, vol.27
, pp. 1468-1478
-
-
Moison, C.1
Senamaud-Beaufort, C.2
Fourrière, L.3
Champion, C.4
Ceccaldi, A.5
Lacomme, S.6
Daunay, A.7
Tost, J.8
Arimondo, P.B.9
Guieysse-Peugeot, A.L.10
-
7
-
-
0027535564
-
Tumorsuppressive effect of the retinoic acid receptor beta in human epidermoid lung cancer cells
-
PMID:8381540
-
Houle B, Rochette-Egly C, Bradley WE. Tumorsuppressive effect of the retinoic acid receptor beta in human epidermoid lung cancer cells. Proc Natl Acad Sci U S A 1993; 90:985-9; PMID:8381540; http:// dx.doi.org/10.1073/pnas.90.3.985
-
(1993)
Proc Natl Acad Sci U S A
, vol.90
, pp. 985-989
-
-
Houle, B.1
Rochette-Egly, C.2
Bradley, W.E.3
-
8
-
-
0029152178
-
Expression of retinoic acid receptor beta mediates retinoic acid-induced growth arrest and apoptosis in breast cancer cells
-
PMID:8519684
-
Seewaldt VL, Johnson BS, Parker MB, Collins SJ, Swisshelm K. Expression of retinoic acid receptor beta mediates retinoic acid-induced growth arrest and apoptosis in breast cancer cells. Cell Growth Differ 1995; 6:1077-88; PMID:8519684
-
(1995)
Cell Growth Differ
, vol.6
, pp. 1077-1088
-
-
Seewaldt, V.L.1
Johnson, B.S.2
Parker, M.B.3
Collins, S.J.4
Swisshelm, K.5
-
9
-
-
33846569960
-
A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing
-
PMID:17211412
-
Ohm JE, McGarvey KM, Yu X, Cheng L, Schuebel KE, Cope L, Mohammad HP, Chen W, Daniel VC, Yu W, et al. A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing. Nat Genet 2007; 39:237-42; PMID:17211412; http://dx.doi. org/10.1038/ng1972
-
(2007)
Nat Genet
, vol.39
, pp. 237-242
-
-
Ohm, J.E.1
McGarvey, K.M.2
Yu, X.3
Cheng, L.4
Schuebel, K.E.5
Cope, L.6
Mohammad, H.P.7
Chen, W.8
Daniel, V.C.9
Yu, W.10
-
10
-
-
33846649587
-
Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer
-
PMID:17200670
-
Schlesinger Y, Straussman R, Keshet I, Farkash S, Hecht M, Zimmerman J, Eden E, Yakhini Z, Ben-Shushan E, Reubinoff BE, et al. Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer. Nat Genet 2007; 39:232-6; PMID:17200670; http://dx.doi. org/10.1038/ng1950
-
(2007)
Nat Genet
, vol.39
, pp. 232-236
-
-
Schlesinger, Y.1
Straussman, R.2
Keshet, I.3
Farkash, S.4
Hecht, M.5
Zimmerman, J.6
Eden, E.7
Yakhini, Z.8
Ben-Shushan, E.9
Reubinoff, B.E.10
-
11
-
-
33846576622
-
Epigenetic stem cell signature in cancer
-
PMID:17200673
-
Widschwendter M, Fiegl H, Egle D, Mueller-Holzner E, Spizzo G, Marth C, Weisenberger DJ, Campan M, Young J, Jacobs I, et al. Epigenetic stem cell signature in cancer. Nat Genet 2007; 39:157-8; PMID:17200673; http://dx.doi.org/10.1038/ng1941
-
(2007)
Nat Genet
, vol.39
, pp. 157-158
-
-
Widschwendter, M.1
Fiegl, H.2
Egle, D.3
Mueller-Holzner, E.4
Spizzo, G.5
Marth, C.6
Weisenberger, D.J.7
Campan, M.8
Young, J.9
Jacobs, I.10
-
12
-
-
32844459336
-
The Polycomb group protein EZH2 directly controls DNA methylation
-
PMID:16357870
-
Viré E, Brenner C, Deplus R, Blanchon L, Fraga M, Didelot C, Morey L, Van Eynde A, Bernard D, Vanderwinden JM, et al. The Polycomb group protein EZH2 directly controls DNA methylation. Nature 2006; 439:871-4; PMID:16357870; http:// dx.doi.org/10.1038/nature04431
-
(2006)
Nature
, vol.439
, pp. 871-874
-
-
Viré, E.1
Brenner, C.2
Deplus, R.3
Blanchon, L.4
Fraga, M.5
Didelot, C.6
Morey, L.7
Van Eynde, A.8
Bernard, D.9
Vanderwinden, J.M.10
-
13
-
-
68049137611
-
Polycomb CBX7 promotes initiation of heritable repression of genes frequently silenced with cancer-specific DNA hypermethylation
-
PMID:19602592
-
Mohammad HP, Cai Y, McGarvey KM, Easwaran H, Van Neste L, Ohm JE, O'Hagan HM, Baylin SB. Polycomb CBX7 promotes initiation of heritable repression of genes frequently silenced with cancer-specific DNA hypermethylation. Cancer Res 2009; 69:6322-30; PMID:19602592; http://dx.doi. org/10.1158/0008-5472.CAN-09-0065
-
(2009)
Cancer Res
, vol.69
, pp. 6322-6330
-
-
Mohammad, H.P.1
Cai, Y.2
McGarvey, K.M.3
Easwaran, H.4
Van Neste, L.5
Ohm, J.E.6
O'Hagan, H.M.7
Baylin, S.B.8
-
14
-
-
33846639662
-
Hypermethylation of CpG island loci and hypomethylation of LINE-1 and Alu repeats in prostate adenocarcinoma and their relationship to clinicopathological features
-
PMID:17139617
-
Cho NY, Kim BH, Choi M, Yoo EJ, Moon KC, Cho YM, Kim D, Kang GH. Hypermethylation of CpG island loci and hypomethylation of LINE-1 and Alu repeats in prostate adenocarcinoma and their relationship to clinicopathological features. J Pathol 2007; 211:269-77; PMID:17139617; http://dx.doi. org/10.1002/path.2106
-
(2007)
J Pathol
, vol.211
, pp. 269-277
-
-
Cho, N.Y.1
Kim, B.H.2
Choi, M.3
Yoo, E.J.4
Moon, K.C.5
Cho, Y.M.6
Kim, D.7
Kang, G.H.8
-
15
-
-
0033452480
-
DNA methylation of retinoic acid receptor beta in breast cancer and possible therapeutic role of 5-aza-2′-deoxycytidine
-
PMID:10477167
-
Bovenzi V, Lê NL, Côte S, Sinnett D, Momparler LF, Momparler RL. DNA methylation of retinoic acid receptor beta in breast cancer and possible therapeutic role of 5-aza-2′-deoxycytidine. Anticancer Drugs 1999; 10:471-6; PMID:10477167; http://dx.doi. org/10.1097/00001813-199906000-00007
-
(1999)
Anticancer Drugs
, vol.10
, pp. 471-476
-
-
Bovenzi, V.1
Lê, N.L.2
Côte, S.3
Sinnett, D.4
Momparler, L.F.5
Momparler, R.L.6
-
16
-
-
0034673671
-
Evidence of epigenetic changes affecting the chromatin state of the retinoic acid receptor beta2 promoter in breast cancer cells
-
PMID:10734315
-
Sirchia SM, Ferguson AT, Sironi E, Subramanyan S, Orlandi R, Sukumar S, Sacchi N. Evidence of epigenetic changes affecting the chromatin state of the retinoic acid receptor beta2 promoter in breast cancer cells. Oncogene 2000; 19:1556-63; PMID:10734315; http://dx.doi.org/10.1038/sj.onc.1203456
-
(2000)
Oncogene
, vol.19
, pp. 1556-1563
-
-
Sirchia, S.M.1
Ferguson, A.T.2
Sironi, E.3
Subramanyan, S.4
Orlandi, R.5
Sukumar, S.6
Sacchi, N.7
-
17
-
-
0034679027
-
Methylation and silencing of the retinoic acid receptor-beta2 gene in breast cancer
-
PMID:10814678
-
Widschwendter M, Berger J, Hermann M, Müller HM, Amberger A, Zeschnigk M, Widschwendter A, Abendstein B, Zeimet AG, Daxenbichler G, et al. Methylation and silencing of the retinoic acid receptor-beta2 gene in breast cancer. J Natl Cancer Inst 2000; 92:826-32; PMID:10814678; http://dx.doi. org/10.1093/jnci/92.10.826
-
(2000)
J Natl Cancer Inst
, vol.92
, pp. 826-832
-
-
Widschwendter, M.1
Berger, J.2
Hermann, M.3
Müller, H.M.4
Amberger, A.5
Zeschnigk, M.6
Widschwendter, A.7
Abendstein, B.8
Zeimet, A.G.9
Daxenbichler, G.10
-
18
-
-
0025006860
-
High levels of de novo methylation and altered chromatin structure at CpG islands in cell lines
-
PMID:1974172
-
Antequera F, Boyes J, Bird A. High levels of de novo methylation and altered chromatin structure at CpG islands in cell lines. Cell 1990; 62:503-14; PMID:1974172; http://dx.doi. org/10.1016/0092-8674(90)90015-7
-
(1990)
Cell
, vol.62
, pp. 503-514
-
-
Antequera, F.1
Boyes, J.2
Bird, A.3
-
19
-
-
78649328949
-
Global profiling of histone and DNA methylation reveals epigenetic-based regulation of gene expression during epithelial to mesenchymal transition in prostate cells
-
PMID:21108828
-
Ke XS, Qu Y, Cheng Y, Li WC, Rotter V, Øyan AM, Kalland KH. Global profiling of histone and DNA methylation reveals epigenetic-based regulation of gene expression during epithelial to mesenchymal transition in prostate cells. BMC Genomics 2010; 11:669; PMID:21108828; http://dx.doi. org/10.1186/1471-2164-11-669
-
(2010)
BMC Genomics
, vol.11
, pp. 669
-
-
Ke, X.S.1
Qu, Y.2
Cheng, Y.3
Li, W.C.4
Rotter, V.5
Øyan, A.M.6
Kalland, K.H.7
-
20
-
-
78649453710
-
Reprogramming of cell junction modules during stepwise epithelial to mesenchymal transition and accumulation of malignant features in vitro in a prostate cell model
-
PMID:20969863
-
Ke XS, Li WC, Hovland R, Qu Y, Liu RH, McCormack E, Thorsen F, Olsen JR, Molven A, Kogan-Sakin I, et al. Reprogramming of cell junction modules during stepwise epithelial to mesenchymal transition and accumulation of malignant features in vitro in a prostate cell model. Exp Cell Res 2011; 317:234-47; PMID:20969863; http://dx.doi. org/10.1016/j.yexcr.2010.10.009
-
(2011)
Exp Cell Res
, vol.317
, pp. 234-247
-
-
Ke, X.S.1
Li, W.C.2
Hovland, R.3
Qu, Y.4
Liu, R.H.5
McCormack, E.6
Thorsen, F.7
Olsen, J.R.8
Molven, A.9
Kogan-Sakin, I.10
-
21
-
-
3042781030
-
Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27
-
PMID:15231737
-
Kirmizis A, Bartley SM, Kuzmichev A, Margueron R, Reinberg D, Green R, Farnham PJ. Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27. Genes Dev 2004; 18:1592-605; PMID:15231737; http://dx.doi. org/10.1101/gad.1200204
-
(2004)
Genes Dev
, vol.18
, pp. 1592-1605
-
-
Kirmizis, A.1
Bartley, S.M.2
Kuzmichev, A.3
Margueron, R.4
Reinberg, D.5
Green, R.6
Farnham, P.J.7
-
22
-
-
33646870495
-
Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions
-
PMID:16618801
-
Bracken AP, Dietrich N, Pasini D, Hansen KH, Helin K. Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions. Genes Dev 2006; 20:1123-36; PMID:16618801; http://dx.doi. org/10.1101/gad.381706
-
(2006)
Genes Dev
, vol.20
, pp. 1123-1136
-
-
Bracken, A.P.1
Dietrich, N.2
Pasini, D.3
Hansen, K.H.4
Helin, K.5
-
23
-
-
18644382388
-
The polycomb group protein EZH2 is involved in progression of prostate cancer
-
PMID:12374981
-
Varambally S, Dhanasekaran SM, Zhou M, Barrette TR, Kumar-Sinha C, Sanda MG, Ghosh D, Pienta KJ, Sewalt RG, Otte AP, et al. The polycomb group protein EZH2 is involved in progression of prostate cancer. Nature 2002; 419:624-9; PMID:12374981; http://dx.doi.org/10.1038/nature01075
-
(2002)
Nature
, vol.419
, pp. 624-629
-
-
Varambally, S.1
Dhanasekaran, S.M.2
Zhou, M.3
Barrette, T.R.4
Kumar-Sinha, C.5
Sanda, M.G.6
Ghosh, D.7
Pienta, K.J.8
Sewalt, R.G.9
Otte, A.P.10
-
24
-
-
80052094817
-
Commercial reverse transcriptase as source of falsepositive strand-specific RNA detection in human cells
-
PMID:21689721
-
Moison C, Arimondo PB, Guieysse-Peugeot AL. Commercial reverse transcriptase as source of falsepositive strand-specific RNA detection in human cells. Biochimie 2011; 93:1731-7; PMID:21689721; http://dx.doi.org/10.1016/j.biochi.2011.06.005
-
(2011)
Biochimie
, vol.93
, pp. 1731-1737
-
-
Moison, C.1
Arimondo, P.B.2
Guieysse-Peugeot, A.L.3
-
25
-
-
78650253763
-
Genome-wide identification of polycomb-associated RNAs by RIP-seq
-
PMID:21172659
-
Zhao J, Ohsumi TK, Kung JT, Ogawa Y, Grau DJ, Sarma K, Song JJ, Kingston RE, Borowsky M, Lee JT. Genome-wide identification of polycomb-associated RNAs by RIP-seq. Mol Cell 2010; 40:939-53; PMID:21172659; http://dx.doi.org/10.1016/j. molcel.2010.12.011
-
(2010)
Mol Cell
, vol.40
, pp. 939-953
-
-
Zhao, J.1
Ohsumi, T.K.2
Kung, J.T.3
Ogawa, Y.4
Grau, D.J.5
Sarma, K.6
Song, J.J.7
Kingston, R.E.8
Borowsky, M.9
Lee, J.T.10
-
26
-
-
51349105905
-
Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line
-
PMID:18753622
-
Gal-Yam EN, Egger G, Iniguez L, Holster H, Einarsson S, Zhang X, Lin JC, Liang G, Jones PA, Tanay A. Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line. Proc Natl Acad Sci U S A 2008; 105:12979-84; PMID:18753622; http://dx.doi. org/10.1073/pnas.0806437105
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 12979-12984
-
-
Gal-Yam, E.N.1
Egger, G.2
Iniguez, L.3
Holster, H.4
Einarsson, S.5
Zhang, X.6
Lin, J.C.7
Liang, G.8
Jones, P.A.9
Tanay, A.10
-
27
-
-
77954842322
-
Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes
-
PMID:20651149
-
Wu H, Coskun V, Tao J, Xie W, Ge W, Yoshikawa K, Li E, Zhang Y, Sun YE. Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes. Science 2010; 329:444-8; PMID:20651149; http://dx.doi.org/10.1126/ science.1190485
-
(2010)
Science
, vol.329
, pp. 444-448
-
-
Wu, H.1
Coskun, V.2
Tao, J.3
Xie, W.4
Ge, W.5
Yoshikawa, K.6
Li, E.7
Zhang, Y.8
Sun, Y.E.9
-
28
-
-
84875333893
-
Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes
-
PMID:23531360
-
Reddington JP, Perricone SM, Nestor CE, Reichmann J, Youngson NA, Suzuki M, Reinhardt D, Dunican DS, Prendergast JG, Mjoseng H, et al. Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes. Genome Biol 2013; 14:R25; PMID:23531360; http://dx.doi. org/10.1186/gb-2013-14-3-r25
-
(2013)
Genome Biol
, vol.14
-
-
Reddington, J.P.1
Perricone, S.M.2
Nestor, C.E.3
Reichmann, J.4
Youngson, N.A.5
Suzuki, M.6
Reinhardt, D.7
Dunican, D.S.8
Prendergast, J.G.9
Mjoseng, H.10
-
29
-
-
84892446057
-
DNA methylation reprogramming in cancer: Does it act by re-configuring the binding landscape of Polycomb repressive complexes?
-
PMID:24277643
-
Reddington JP, Sproul D, Meehan RR. DNA methylation reprogramming in cancer: Does it act by re-configuring the binding landscape of Polycomb repressive complexes? Bioessays 2014; 36:134-40; PMID:24277643; http://dx.doi.org/10.1002/ bies.201300130
-
(2014)
Bioessays
, vol.36
, pp. 134-140
-
-
Reddington, J.P.1
Sproul, D.2
Meehan, R.R.3
-
30
-
-
38449113853
-
DNA methylation analysis by pyrosequencing
-
PMID:17853883
-
Tost J, Gut IG. DNA methylation analysis by pyrosequencing. Nat Protoc 2007; 2:2265-75; PMID:17853883; http://dx.doi.org/10.1038/ nprot.2007.314
-
(2007)
Nat Protoc
, vol.2
, pp. 2265-2275
-
-
Tost, J.1
Gut, I.G.2
|