-
1
-
-
0034598936
-
Looping, linking, and chromatin activity:new insights into beta-globin locus regulation
-
Engel, J.D. and Tanimoto, K. (2000) Looping, linking, and chromatin activity:new insights into beta-globin locus regulation. Cell, 100, 499-502.
-
(2000)
Cell
, vol.100
, pp. 499-502
-
-
Engel, J.D.1
Tanimoto, K.2
-
2
-
-
0033215443
-
Looping versus linking: Toward a model for long-distance gene activation
-
DOI 10.1101/gad.13.19.2465
-
Bulger, M. and Groudine, M. (1999) Looping versus linking:toward a model for long-distance gene activation. Genes Dev., 13, 2465-2477. (Pubitemid 29489638)
-
(1999)
Genes and Development
, vol.13
, Issue.19
, pp. 2465-2477
-
-
Bulger, M.1
Groudine, M.2
-
3
-
-
0344272073
-
The 'β-like-globin' gene domain in human erythroid cells
-
DOI 10.1073/pnas.82.19.6384
-
Tuan, D., Solomon, W., Li, Q. and London, I.M. (1985) The ''beta-like-globin'' gene domain in human erythroid cells. Proc. Natl Acad. Sci. USA, 82, 6384-6388. (Pubitemid 16230517)
-
(1985)
Proceedings of the National Academy of Sciences of the United States of America
, vol.82
, Issue.19
, pp. 6384-6388
-
-
Tuan, D.1
Solomon, W.2
Li, Q.3
London, I.M.4
-
4
-
-
0023550898
-
Evidence for a locus activation region: The formation of developmentally stable hypersensitive sites in globin-expressing hybrids
-
Forrester, W.C., Takegawa, S., Papayannopoulou, T., Stamatoyannopoulos, G. and Groudine, M. (1987) Evidence for a locus activation region: the formation of developmentally stable hypersensitive sites in globin-expressing hybrids. Nucleic Acids Res., 15, 10159-10177. (Pubitemid 18019308)
-
(1987)
Nucleic Acids Research
, vol.15
, Issue.24
, pp. 10159-10177
-
-
Forrester, W.C.1
Takegawa, S.2
Papayannopoulou, T.3
Stamatoyannopoulos, G.4
Groudine, M.5
-
5
-
-
0023663887
-
Position-independent, high-level expression of the human beta-globin gene in transgenic mice
-
Grosveld, F., van Assendelft, G.B., Greaves, D.R. and Kollias, G. (1987) Position-independent, high-level expression of the human beta-globin gene in transgenic mice. Cell, 51, 975-985.
-
(1987)
Cell
, vol.51
, pp. 975-985
-
-
Grosveld, F.1
Van Assendelft, G.B.2
Greaves, D.R.3
Kollias, G.4
-
6
-
-
51849098920
-
Locus control region mediated regulation of adult beta-globin gene expression
-
Liang, S., Moghimi, B., Yang, T.P., Strouboulis, J. and Bungert, J. (2008) Locus control region mediated regulation of adult beta-globin gene expression. J. Cell. Biochem., 105, 9-16.
-
(2008)
J. Cell. Biochem.
, vol.105
, pp. 9-16
-
-
Liang, S.1
Moghimi, B.2
Yang, T.P.3
Strouboulis, J.4
Bungert, J.5
-
7
-
-
35348903151
-
Transcriptional control of erythropoiesis: Emerging mechanisms and principles
-
DOI 10.1038/sj.onc.1210761, PII 1210761
-
Kim, S.I. and Bresnick, E.H. (2007) Transcriptional control of erythropoiesis: emerging mechanisms and principles. Oncogene, 26, 6777-6794. (Pubitemid 47585102)
-
(2007)
Oncogene
, vol.26
, Issue.47
, pp. 6777-6794
-
-
Kim, S.-I.1
Bresnick, E.H.2
-
8
-
-
0036923833
-
Looping and interaction between hypersensitive sites in the active β-globin locus
-
DOI 10.1016/S1097-2765(02)00781-5
-
Tolhuis, B., Palstra, R.J., Splinter, E., Grosveld, F. and de Laat, W. (2002) Looping and interaction between hypersensitive sites in the active beta-globin locus. Mol. Cell, 10, 1453-1465. (Pubitemid 36050885)
-
(2002)
Molecular Cell
, vol.10
, Issue.6
, pp. 1453-1465
-
-
Tolhuis, B.1
Palstra, R.-J.2
Splinter, E.3
Grosveld, F.4
De Laat, W.5
-
9
-
-
0036898580
-
Long-range chromatin regulatory interactions in vivo
-
DOI 10.1038/ng1051
-
Carter, D., Chakalova, L., Osborne, C.S., Dai, Y.F. and Fraser, P. (2002) Long-range chromatin regulatory interactions in vivo. Nat. Genet., 32, 623-626. (Pubitemid 35435174)
-
(2002)
Nature Genetics
, vol.32
, Issue.4
, pp. 623-626
-
-
Carter, D.1
Chakalova, L.2
Osborne, C.S.3
Dai, Y.-F.4
Fraser, P.5
-
10
-
-
0344394531
-
Developmental stage-specific epigenetic control of human β-globin gene expression is potentiated in hematopoietic progenitor cells prior to their transcriptional activation
-
DOI 10.1182/blood-2003-05-1540
-
Bottardi, S., Aumont, A., Grosveld, F. and Milot, E. (2003) Developmental stage-specific epigenetic control of human beta-globin gene expression is potentiated in hematopoietic progenitor cells prior to their transcriptional activation. Blood, 102, 3989-3997. (Pubitemid 37486980)
-
(2003)
Blood
, vol.102
, Issue.12
, pp. 3989-3997
-
-
Bottardi, S.1
Aumont, A.2
Grosveld, F.3
Milot, E.4
-
11
-
-
33747623081
-
Lineage-specific activators affect Β-globin locus chromatin in multipotent hematopoietic progenitors
-
DOI 10.1038/sj.emboj.7601232, PII 7601232
-
Bottardi, S., Ross, J., Pierre-Charles, N., Blank, V. and Milot, E. (2006) Lineage-specific activators affect beta-globin locus chromatin in multipotent hematopoietic progenitors. EMBO J., 25, 3586-3595. (Pubitemid 44264869)
-
(2006)
EMBO Journal
, vol.25
, Issue.15
, pp. 3586-3595
-
-
Bottardi, S.1
Ross, J.2
Pierre-Charles, N.3
Blank, V.4
Milot, E.5
-
12
-
-
33644934033
-
Recruitment of transcription complexes to the beta-globin locus control region and transcription of hypersensitive site 3 prior to erythroid differentiation of murine embryonic stem cells
-
Levings, P.P., Zhou, Z., Vieira, F.F., Crusselle-Davis, V.J. and Bungert, J. (2006) Recruitment of transcription complexes to the beta-globin locus control region and transcription of hypersensitive site 3 prior to erythroid differentiation of murine embryonic stem cells. FEBS J., 273, 746-755.
-
(2006)
FEBS J.
, vol.273
, pp. 746-755
-
-
Levings, P.P.1
Zhou, Z.2
Vieira, F.F.3
Crusselle-Davis, V.J.4
Bungert, J.5
-
13
-
-
9644302474
-
Recruitment of transcription complexes to the β-globin gene locus in Vivo and in Vitro
-
DOI 10.1074/jbc.M408883200
-
Vieira, F.F., Levings, P.P., Hill, M.A., Crusselle, V.J., Kang, S.H., Engel, J.D. and Bungert, J. (2004) Recruitment of transcription complexes to the beta-globin gene locus in vivo and in vitro. J. Biol. Chem., 279, 50350-50357. (Pubitemid 39577852)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.48
, pp. 50350-50357
-
-
Vieira, K.F.1
Levings, P.P.2
Hill, M.A.3
Crusselle, V.J.4
Kang, S.-H.L.5
Engel, J.D.6
Bungert, J.7
-
14
-
-
0036227306
-
The human beta-globin locus control region
-
Levings, P.P. and Bungert, J. (2002) The human beta-globin locus control region. Eur. J. Biochem., 269, 1589-1599.
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 1589-1599
-
-
Levings, P.P.1
Bungert, J.2
-
15
-
-
77952328090
-
USF and NF-E2 cooperate to regulate the recruitment and activity of RNA polymerase II in the beta-globin gene locus
-
Zhou, Z., Li, X., Deng, C., Ney, P.A., Huang, S. and Bungert, J. (2010) USF and NF-E2 cooperate to regulate the recruitment and activity of RNA polymerase II in the beta-globin gene locus. J. Biol. Chem., 285, 15894-15905.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 15894-15905
-
-
Zhou, Z.1
Li, X.2
Deng, C.3
Ney, P.A.4
Huang, S.5
Bungert, J.6
-
16
-
-
13844318521
-
Control of globin gene expression during development and erythroid differentiation
-
DOI 10.1016/j.exphem.2004.11.007
-
Stamatoyannopoulos, G. (2005) Control of globin gene expression during development and erythroid differentiation. Exp. Hematol., 33, 259-271. (Pubitemid 40261307)
-
(2005)
Experimental Hematology
, vol.33
, Issue.3
, pp. 259-271
-
-
Stamatoyannopoulos, G.1
-
17
-
-
84871890500
-
EKLF/KLF1, a tissue-restricted integrator of transcriptional control, chromatin remodeling, and lineage determination
-
Yien, Y.Y. and Bieker, J.J. (2013) EKLF/KLF1, a tissue-restricted integrator of transcriptional control, chromatin remodeling, and lineage determination. Mol. Cell. Biol., 33, 4-13.
-
(2013)
Mol. Cell. Biol.
, vol.33
, pp. 4-13
-
-
Yien, Y.Y.1
Bieker, J.J.2
-
18
-
-
0032475845
-
A SWI/SNF-related chromatin remodeling complex, E-RC1, is required for tissue-specific transcriptional regulation by EKLF in vitro
-
DOI 10.1016/S0092-8674(00)81785-7
-
Armstrong, J.A., Bieker, J.J. and Emerson, B.M. (1998) A SWI/SNF-related chromatin remodeling complex, E-RC1, is required for tissue-specific transcriptional regulation by EKLF in vitro. Cell, 95, 93-104. (Pubitemid 28458027)
-
(1998)
Cell
, vol.95
, Issue.1
, pp. 93-104
-
-
Armstrong, J.A.1
Bieker, J.J.2
Emerson, B.M.3
-
19
-
-
63149139035
-
Distinct modes of gene regulation by a cell-specific transcriptional activator
-
Sengupta, T., Cohet, N., Morle, F. and Bieker, J.J. (2009) Distinct modes of gene regulation by a cell-specific transcriptional activator. Proc. Natl Acad. Sci. USA, 106, 4213-4218.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 4213-4218
-
-
Sengupta, T.1
Cohet, N.2
Morle, F.3
Bieker, J.J.4
-
20
-
-
77952303405
-
Differential coregulator requirements for function of the hematopoietic transcription factor GATA-1 at endogenous loci
-
Pope, N.J. and Bresnick, E.H. (2010) Differential coregulator requirements for function of the hematopoietic transcription factor GATA-1 at endogenous loci. Nucleic Acids Res., 38, 2190-2200.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 2190-2200
-
-
Pope, N.J.1
Bresnick, E.H.2
-
21
-
-
13244272059
-
Proximity among distant regulatory elements at the β-globin locus requires GATA-1 and FOG-1
-
DOI 10.1016/j.molcel.2004.12.028, PII S1097276505010154
-
Vakoc, C.R., Letting, D.L., Gheldof, N., Sawado, T., Bender, M.A., Groudine, M., Weiss, M.J., Dekker, J. and Blobel, G.A. (2005) Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1. Mol. Cell, 17, 453-462. (Pubitemid 40193315)
-
(2005)
Molecular Cell
, vol.17
, Issue.3
, pp. 453-462
-
-
Vakoc, C.R.1
Letting, D.L.2
Gheldof, N.3
Sawado, T.4
Bender, M.A.5
Groudine, M.6
Weiss, M.J.7
Dekker, J.8
Blobel, G.A.9
-
22
-
-
6044275816
-
SCL: From the origin of hematopoiesis to stem cells and leukemia
-
DOI 10.1016/j.exphem.2003.10.010
-
Lecuyer, E. and Hoang, T. (2004) SCL: from the origin of hematopoiesis to stem cells and leukemia. Exp. Hematol., 32, 11-24. (Pubitemid 38064397)
-
(2004)
Experimental Hematology
, vol.32
, Issue.1
, pp. 11-24
-
-
Lecuyer, E.1
Hoang, T.2
-
23
-
-
0030999645
-
The LIM-only protein Lmo2 is a bridging molecule assembling an erythroid, DNA-binding complex which includes the TAL1, E47, GATA-1 and Ldb1/NLI proteins
-
DOI 10.1093/emboj/16.11.3145
-
Wadman, I.A., Osada, H., Grutz, G.G., Agulnick, A.D., Westphal, H., Forster, A. and Rabbitts, T.H. (1997) The LIM-only protein Lmo2 is a bridging molecule assembling an erythroid, DNA-binding complex which includes the TAL1, E47, GATA-1 and Ldb1/NLI proteins. EMBO J., 16, 3145-3157. (Pubitemid 27234954)
-
(1997)
EMBO Journal
, vol.16
, Issue.11
, pp. 3145-3157
-
-
Wadman, I.A.1
Osada, H.2
Grutz, G.G.3
Agulnick, A.D.4
Westphal, H.5
Forster, A.6
Rabbitts, T.H.7
-
24
-
-
36749056884
-
A Positive Role for NLI/Ldb1 in Long-Range β-Globin Locus Control Region Function
-
DOI 10.1016/j.molcel.2007.09.025, PII S1097276507006375
-
Song, S.H., Hou, C. and Dean, A. (2007) A positive role for NLI/Ldb1 in long-range beta-globin locus control region function. Mol. Cell, 28, 810-822. (Pubitemid 350217055)
-
(2007)
Molecular Cell
, vol.28
, Issue.5
, pp. 810-822
-
-
Song, S.-H.1
Hou, C.2
Dean, A.3
-
25
-
-
84861964135
-
Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor
-
Deng, W., Lee, J., Wang, H., Miller, J., Reik, A., Gregory, P.D., Dean, A. and Blobel, G.A. (2013) Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor. Cell, 149, 1233-1244.
-
(2013)
Cell
, vol.149
, pp. 1233-1244
-
-
Deng, W.1
Lee, J.2
Wang, H.3
Miller, J.4
Reik, A.5
Gregory, P.D.6
Dean, A.7
Blobel, G.A.8
-
26
-
-
67049108075
-
The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development
-
Wilson, N.K., Miranda-Saavedra, D., Kinston, S., Bonadies, N., Foster, S.D., Calero-Nieto, F., Dawson, M.A., Donaldson, I.J., Dumon, S., Frampton, J. et al. (2009) The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development. Blood, 113, 5456-5465.
-
(2009)
Blood
, vol.113
, pp. 5456-5465
-
-
Wilson, N.K.1
Miranda-Saavedra, D.2
Kinston, S.3
Bonadies, N.4
Foster, S.D.5
Calero-Nieto, F.6
Dawson, M.A.7
Donaldson, I.J.8
Dumon, S.9
Frampton, J.10
-
27
-
-
77955131763
-
Genome-wide identification of TAL1's functional targets: Insights into its mechanisms of action in primary erythroid cells
-
Kassouf, M.T., Hughes, J.R., Taylor, S., McGowan, S.J., Soneji, S., Green, A.L., Vyas, P. and Porcher, C. (2010) Genome-wide identification of TAL1's functional targets: insights into its mechanisms of action in primary erythroid cells. Genome Res., 20, 1064-1083.
-
(2010)
Genome Res.
, vol.20
, pp. 1064-1083
-
-
Kassouf, M.T.1
Hughes, J.R.2
Taylor, S.3
McGowan, S.J.4
Soneji, S.5
Green, A.L.6
Vyas, P.7
Porcher, C.8
-
28
-
-
25444433340
-
Upstream stimulating factors: Highly versatile stress-responsive transcription factors
-
DOI 10.1111/j.1600-0749.2005.00262.x
-
Corre, S. and Galibert, M.D. (2005) Upstream stimulating factors: highly versatile stress-responsive transcription factors. Pigment Cell Res., 18, 337-348. (Pubitemid 41360809)
-
(2005)
Pigment Cell Research
, vol.18
, Issue.5
, pp. 337-348
-
-
Corre, S.1
Galibert, M.-D.2
-
29
-
-
0037440657
-
Characterization of the human β-globin downstream promoter region
-
DOI 10.1093/nar/gkg209
-
Leach, K.M., Vieira, K.F., Kang, S.H., Aslanian, A., Teichmann, M., Roeder, R.G. and Bungert, J. (2003) Characterization of the human beta-globin downstream promoter region. Nucleic Acids Res., 31, 1292-1301. (Pubitemid 36284970)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.4
, pp. 1292-1301
-
-
Leach, K.M.1
Vieira, K.F.2
Lee Kang, S.-H.3
Aslanian, A.4
Teichmann, M.5
Roeder, R.G.6
Bungert, J.7
-
30
-
-
33748639962
-
Antagonistic regulation of β-globin gene expression by helix-loop-helix proteins USF and TFII-I
-
DOI 10.1128/MCB.01770-05
-
Crusselle-Davis, V.J., Vieira, K.F., Zhou, Z., Anantharaman, A. and Bungert, J. (2006) Antagonistic regulation of beta-globin gene expression by helix-loop-helix proteins USF and TFII-I. Mol. Cell. Biol., 26, 6832-6843. (Pubitemid 44387633)
-
(2006)
Molecular and Cellular Biology
, vol.26
, Issue.18
, pp. 6832-6843
-
-
Crusselle-Davis, V.J.1
Vieira, K.F.2
Zhou, Z.3
Anantharaman, A.4
Bungert, J.5
-
31
-
-
70350549894
-
Defective erythropoiesis in transgenic mice expressing dominantnegative upstream stimulatory factor
-
Liang, S.Y., Moghimi, B., Crusselle-Davis, V.J., Lin, I.J., Rosenberg, M.H., Strouboulis, J., Huang, S. and Bungert, J. (2009) Defective erythropoiesis in transgenic mice expressing dominantnegative upstream stimulatory factor. Mol. Cell. Biol., 29, 5900-5910.
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 5900-5910
-
-
Liang, S.Y.1
Moghimi, B.2
Crusselle-Davis, V.J.3
Lin, I.J.4
Rosenberg, M.H.5
Strouboulis, J.6
Huang, S.7
Bungert, J.8
-
32
-
-
84879613132
-
USF1 and hSET1A mediated epigenetic modifications regulate lineage differentiation and HoxB4 transcription
-
Deng, C., Li, Y., Liang, S., Cui, K., Salz, T., Yang, H., Tang, Z., Gallagher, P.G., Qiu, Y., Roeder, R. et al. (2013) USF1 and hSET1A mediated epigenetic modifications regulate lineage differentiation and HoxB4 transcription. PLoS Genet., 9, e1003524.
-
(2013)
PLoS Genet.
, vol.9
-
-
Deng, C.1
Li, Y.2
Liang, S.3
Cui, K.4
Salz, T.5
Yang, H.6
Tang, Z.7
Gallagher, P.G.8
Qiu, Y.9
Roeder, R.10
-
33
-
-
19544371373
-
Gene targeting in mice: Functional analysis of the mammalian genome for the twenty-first century
-
DOI 10.1038/nrg1619
-
Capecchi, M.R. (2005) Gene targeting in mice: functional analysis of the mammalian genome for the twenty-first century. Nat. Rev. Genet., 6, 507-512. (Pubitemid 40733895)
-
(2005)
Nature Reviews Genetics
, vol.6
, Issue.6
, pp. 507-512
-
-
Capecchi, M.R.1
-
34
-
-
78049432269
-
A single cis element maintains repression of the key developmental regulator Gata2
-
Snow, J.W., Trowbridge, J.J., Fujiwara, T., Emambokus, N.E., Grass, J.A., Orkin, S.H. and Bresnick, E.H. (2010) A single cis element maintains repression of the key developmental regulator Gata2. PLoS Genet., 6, e1001103.
-
(2010)
PLoS Genet.
, vol.6
-
-
Snow, J.W.1
Trowbridge, J.J.2
Fujiwara, T.3
Emambokus, N.E.4
Grass, J.A.5
Orkin, S.H.6
Bresnick, E.H.7
-
35
-
-
0028670569
-
In vivo repression by a site-specific DNA-binding protein designed against an oncogenic sequence
-
Choo, Y., Sanchez-Garcia, I. and Klug, A. (1994) In vivo repression by a site-specific DNA-binding protein designed against an oncogenic sequence. Nature, 372, 642-645.
-
(1994)
Nature
, vol.372
, pp. 642-645
-
-
Choo, Y.1
Sanchez-Garcia, I.2
Klug, A.3
-
36
-
-
84868089898
-
Neutralizing the function of a b-globin-associated cis-regulatory element using an artificial zinc finger DNA-binding domain
-
Barrow, J.J., Masannat, J. and Bungert, J. (2012) Neutralizing the function of a b-globin-associated cis-regulatory element using an artificial zinc finger DNA-binding domain. Proc. Natl Acad. Sci. USA, 109, 17948-17953.
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 17948-17953
-
-
Barrow, J.J.1
Masannat, J.2
Bungert, J.3
-
37
-
-
0035712253
-
Custom DNA-binding proteins come of age: Polydactyl zinc-finger proteins
-
DOI 10.1016/S0958-1669(01)00272-5
-
Segal, D.J. and Barbas, C.F. 3rd (2001) Custom DNA-binding proteins come of age: polydactyl zinc-finger proteins. Curr. Opin. Biotechnol., 12, 632-637. (Pubitemid 34146514)
-
(2001)
Current Opinion in Biotechnology
, vol.12
, Issue.6
, pp. 632-637
-
-
Segal, D.J.1
Barbas III, C.F.2
-
38
-
-
27444444925
-
Development of zinc finger domains for recognition of the 5′-CNN-3′ family DNA sequences and their use in the construction of artificial transcription factors
-
DOI 10.1074/jbc.M506654200
-
Dreier, B., Fuller, R.P., Segal, D.J., Lund, C.V., Blancafort, P., Huber, A., Koksch, B. and Barbas, C.F. 3rd (2005) Development of zinc finger domains for recognition of the 5'CNN-3' family DNA sequences and their use in the construction of artificial transcription factors. J. Biol. Chem., 280, 35588-35597. (Pubitemid 41532751)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.42
, pp. 35588-35597
-
-
Dreier, B.1
Fuller, R.P.2
Segal, D.J.3
Lund, C.V.4
Blancafort, P.5
Huber, A.6
Koksch, B.7
Barbas III, C.F.8
-
39
-
-
84934444590
-
Generation and functional analysis of zinc finger nucleases
-
Cathomen, T., Segal, D.J., Brondani, V. and Muller-Lerch, F. (2008) Generation and functional analysis of zinc finger nucleases. Methods Mol. Biol., 434, 277-290.
-
(2008)
Methods Mol. Biol.
, vol.434
, pp. 277-290
-
-
Cathomen, T.1
Segal, D.J.2
Brondani, V.3
Muller-Lerch, F.4
-
40
-
-
76349086451
-
Dual action of epidermal growth factor: Extracellular signal-stimulated nuclear-cytoplasmic export and coordinated translation of selected messenger RNA
-
Tsai, N.P., Lin, Y.L., Tsui, Y.C. and Wei, L.N. (2010) Dual action of epidermal growth factor: extracellular signal-stimulated nuclear-cytoplasmic export and coordinated translation of selected messenger RNA. J. Cell Biol., 188, 325-333.
-
(2010)
J. Cell Biol.
, vol.188
, pp. 325-333
-
-
Tsai, N.P.1
Lin, Y.L.2
Tsui, Y.C.3
Wei, L.N.4
-
41
-
-
83255164884
-
Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution
-
Rhee, H.S. and Pugh, B.F. (2011) Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution. Cell, 147, 1408-1419.
-
(2011)
Cell
, vol.147
, pp. 1408-1419
-
-
Rhee, H.S.1
Pugh, B.F.2
-
42
-
-
78651271733
-
Integrated Genomics Viewer
-
Robinson, J.T., Thorvaldsdottir, H., Winckler, W., Guttman, M., Lander, E.S., Getz, G. and Mesirov, J.P. (2011) Integrated Genomics Viewer. Nat. Biotechnol., 29, 24-26.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdottir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
Getz, G.6
Mesirov, J.P.7
-
43
-
-
84875634162
-
Integrated Genomics Viewer (IGV): High-performance genomics data visualization and exploration
-
Thorvaldsdottir, H., Robinson, J.T. and Mesirov, J.P. (2013) Integrated Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief. Bioinform., 14, 178-192.
-
(2013)
Brief. Bioinform.
, vol.14
, pp. 178-192
-
-
Thorvaldsdottir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
44
-
-
77950390899
-
H4R3 methylation facilitates beta-globin transcription by regulating histone acetyltransferase binding and H3 acetylation
-
Li, X., Patel, B., Zhou, Z., Liang, S., Ybarra, R., Qiu, Y., Felsenfeld, G., Bungert, J. and Huang, S. (2010) H4R3 methylation facilitates beta-globin transcription by regulating histone acetyltransferase binding and H3 acetylation. Blood, 115, 2028-2037.
-
(2010)
Blood
, vol.115
, pp. 2028-2037
-
-
Li, X.1
Patel, B.2
Zhou, Z.3
Liang, S.4
Ybarra, R.5
Qiu, Y.6
Felsenfeld, G.7
Bungert, J.8
Huang, S.9
-
45
-
-
0035964317
-
Activation of β-major globin gene transcription is associated with recruitment of NF-E2 to the β-globin LCR and gene promoter
-
DOI 10.1073/pnas.181344198
-
Sawado, T., Igarashi, K. and Groudine, M. (2001) Activation of beta-major globin gene transcription is associated with recruitment of NF-E2 to the beta-globin LCR and gene promoter. Proc. Natl Acad. Sci. USA, 98, 10226-10231. (Pubitemid 32803002)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.18
, pp. 10226-10231
-
-
Sawado, T.1
Igarashi, K.2
Groudine, M.3
-
46
-
-
0037095744
-
Combining chromatin immunoprecipitation and DNA footprinting: A novel method to analyze protein-DNA interactions in vivo
-
Kang, S.H., Vieira, K. and Bungert, J. (2002) Combining chromatin immunoprecipitation and DNA footprinting: a novel method to analyze protein-DNA interactions in vivo. Nucleic Acids Res., 30, e44.
-
(2002)
Nucleic Acids Res.
, vol.30
-
-
Kang, S.H.1
Vieira, K.2
Bungert, J.3
-
47
-
-
0034691081
-
A downstream element in the human β-globin promoter: Evidence of extended sequence-specific transcription factor IID contacts
-
DOI 10.1073/pnas.120181197
-
Lewis, B.A., Kim, T.K. and Orkin, S.H. (2000) A downstream element in the human beta-globin promoter: evidence for extended sequence-specific transcription factor IID contacts. Proc. Natl Acad. Sci. USA, 97, 7172-7177. (Pubitemid 30431436)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.13
, pp. 7172-7177
-
-
Lewis, B.A.1
Kim, T.-K.2
Orkin, S.H.3
-
48
-
-
0035076274
-
Reconstitution of human β-globin locus control region hypersensitive sites in the absence of chromatin assembly
-
DOI 10.1128/MCB.21.8.2629-2640.2001
-
Leach, K.M., Nightingale, K., Igarashi, K., Levings, P.P., Engel, J.D., Becker, P.B. and Bungert, J. (2001) Reconstitution of human beta-globin locus control region hypersensitive sites in the absence of chromatin assembly. Mol. Cell. Biol., 21, 2629-2640. (Pubitemid 32244908)
-
(2001)
Molecular and Cellular Biology
, vol.21
, Issue.8
, pp. 2629-2640
-
-
Leach, K.M.1
Nightingale, K.2
Igarashi, K.3
Levings, P.P.4
Engel, J.D.5
Becker, P.B.6
Bungert, J.7
-
49
-
-
0034854577
-
Distinct mechanisms control RNA polymerase II recruitment to a tissue-specific locus control region and a downstream promoter
-
DOI 10.1016/S1097-2765(01)00309-4
-
Johnson, K.D., Christensen, H.M., Zhao, B. and Bresnick, E.H. (2001) Distinct mechanisms control RNA polymerase II recruitment to a tissue-specific locus control region and a downstream promoter. Mol. Cell, 8, 465-471. (Pubitemid 32831563)
-
(2001)
Molecular Cell
, vol.8
, Issue.2
, pp. 465-471
-
-
Johnson, K.D.1
Christensen, H.M.2
Zhao, B.3
Bresnick, E.H.4
-
50
-
-
84865708757
-
An expansive human regulatory lexicon encoded in transcription factor footprints
-
Neph, S., Vierstra, J., Stergachis, A.B., Reynolds, A.P., Haugen, E., Vernot, B., Thurman, R.E., John, S., Sandstrom, R., Johnson, A.K. et al. (2012) An expansive human regulatory lexicon encoded in transcription factor footprints. Nature, 489, 83-90.
-
(2012)
Nature
, vol.489
, pp. 83-90
-
-
Neph, S.1
Vierstra, J.2
Stergachis, A.B.3
Reynolds, A.P.4
Haugen, E.5
Vernot, B.6
Thurman, R.E.7
John, S.8
Sandstrom, R.9
Johnson, A.K.10
-
51
-
-
60549103722
-
BRG1 requirement for long-range interaction of a locus control region with a downstream promoter
-
Kim, S.I., Bultman, S.J., Kiefer, C.M., Dean, A. and Bresnick, E.H. (2009) BRG1 requirement for long-range interaction of a locus control region with a downstream promoter. Proc. Natl Acad. Sci. USA, 17, 2259-2264.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.17
, pp. 2259-2264
-
-
Kim, S.I.1
Bultman, S.J.2
Kiefer, C.M.3
Dean, A.4
Bresnick, E.H.5
-
52
-
-
84875464666
-
Actual low ligation frequencies in the chromosome conformation capture procedure
-
Gavrilov, A.A., Golov, A.K. and Razin, S.V. (2013) Actual low ligation frequencies in the chromosome conformation capture procedure. PLoS One, 8, e60403.
-
(2013)
PLoS One
, vol.8
-
-
Gavrilov, A.A.1
Golov, A.K.2
Razin, S.V.3
-
53
-
-
84876276025
-
In vivo live imaging of RNA polymerase II transcription factories in primary cells
-
Ghamari, A., van de Corput, M.P., Thongjuea, S., van Cappellen, W.A., van Ijcken, W., van Haren, J., Soler, E., Eick, D., Lenhard, B. and Grosveld, F.G. (2013) In vivo live imaging of RNA polymerase II transcription factories in primary cells. Genes Dev., 27, 767-777.
-
(2013)
Genes Dev.
, vol.27
, pp. 767-777
-
-
Ghamari, A.1
Van De Corput, M.P.2
Thongjuea, S.3
Van Cappellen, W.A.4
Van Ijcken, W.5
Van Haren, J.6
Soler, E.7
Eick, D.8
Lenhard, B.9
Grosveld, F.G.10
-
54
-
-
33744779614
-
The locus control region is required for association of the murine β-globin locus with engaged transcription factories during erythroid maturation
-
DOI 10.1101/gad.1419506
-
Ragoczy, T., Bender, M.A., Telling, A., Byron, R. and Groudine, M. (2006) The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation. Genes Dev., 20, 1447-1457. (Pubitemid 43830652)
-
(2006)
Genes and Development
, vol.20
, Issue.11
, pp. 1447-1457
-
-
Ragoczy, T.1
Bender, M.A.2
Telling, A.3
Byron, R.4
Groudine, M.5
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