-
1
-
-
33847076849
-
Chromatin modifications and their function
-
DOI 10.1016/j.cell.2007.02.005, PII S0092867407001845
-
Kouzarides, T. (2007) Chromatin modifications and their function. Cell, 128, 693-705. (Pubitemid 46273577)
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 693-705
-
-
Kouzarides, T.1
-
2
-
-
36448949026
-
Multivalent engagement of chromatin modifications by linked binding modules
-
DOI 10.1038/nrm2298, PII NRM2298
-
Ruthenburg, A.J., Li, H., Patel, D.J. and Allis, D.C. (2007) Mutivalent engagement of chromatin modifications by linked binding modules. Nat. Rev. Mol. Cell Biol., 8, 983-994. (Pubitemid 350174643)
-
(2007)
Nature Reviews Molecular Cell Biology
, vol.8
, Issue.12
, pp. 983-994
-
-
Ruthenburg, A.J.1
Li, H.2
Patel, D.J.3
David Allis, C.4
-
3
-
-
33846019277
-
Methylation of Lysine 4 on Histone H3: Intricacy of Writing and Reading a Single Epigenetic Mark
-
DOI 10.1016/j.molcel.2006.12.014, PII S1097276506008720
-
Ruthenburg, A.J., Allis, C.D. and Wysocka, J. (2007) Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark. Mol. Cell, 25, 15-30. (Pubitemid 46049068)
-
(2007)
Molecular Cell
, vol.25
, Issue.1
, pp. 15-30
-
-
Ruthenburg, A.J.1
Allis, C.D.2
Wysocka, J.3
-
4
-
-
44649139771
-
Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation
-
Shilatifard, A. (2008) Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation. Curr. Opin. Cell Biol., 20, 1-8.
-
(2008)
Curr. Opin. Cell Biol.
, vol.20
, pp. 1-8
-
-
Shilatifard, A.1
-
5
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
DOI 10.1016/j.cell.2007.05.009, PII S0092867407006009
-
Barski, A., Cuddapah, S., Cui, K., Roh, T.Y., Schones, D.E., Wang, Z., Wei, G., Chepelev, I. and Zhao, K. (2007) High-resolution profiling of histone methylations in the human genome. Cell, 129, 823-837. (Pubitemid 46802390)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.-Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
6
-
-
19944430797
-
Genomic maps and comparative analysis of histone modifications in human and mouse
-
DOI 10.1016/j.cell.2005.01.001, PII S0092867405000395
-
Bernstein, B.E., Kamal, M., Lindblad-Toh, K., Bekiranov, S., Bailey, D.K., Huebert, D.J., McMahon, S., Karlsson, E.K., Kulbokas, E.J., Gingeras, T.R. et al. (2005) Genomic maps and comparative analysis of histone modifications in human and mouse. Cell, 120, 169-181. (Pubitemid 40174761)
-
(2005)
Cell
, vol.120
, Issue.2
, pp. 169-181
-
-
Bernstein, B.E.1
Kamal, M.2
Lindblad-Toh, K.3
Bekiranov, S.4
Bailey, D.K.5
Huebert, D.J.6
McMahon, S.7
Karlsson, E.K.8
Kulbokas III, E.J.9
Gingeras, T.R.10
Schreiber, S.L.11
Lander, E.S.12
-
7
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
DOI 10.1038/ng1966, PII NG1966
-
Heintzman, N.D., Stuart, R.K., Hon, G., Fu, Y., Ching, C.W., Hawkins, R.D., Barrera, L.O., Van Calcar, S., Qu, C., Ching, K.A. et al. (2007) Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet., 39, 311-318. (Pubitemid 46328487)
-
(2007)
Nature Genetics
, vol.39
, Issue.3
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
Van Calcar, S.8
Qu, C.9
Ching, K.A.10
Wang, W.11
Weng, Z.12
Green, R.D.13
Crawford, G.E.14
Ren, B.15
-
8
-
-
2442454683
-
Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome
-
DOI 10.1073/pnas.0401866101
-
Liang, G., Lin, J.C., Wei, V., Yoo, C., Cheng, J.C., Nguyen, C.T., Weisenberger, D.J., Egger, G., Takai, D., Gonzales, F.A. et al. (2004) Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome. Proc. Natl Acad. Sci. USA, 101, 7357-7362. (Pubitemid 38638037)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.19
, pp. 7357-7362
-
-
Liang, G.1
Lin, J.C.Y.2
Wei, V.3
Yoo, C.4
Cheng, J.C.5
Nguyen, C.T.6
Weisenberger, D.J.7
Egger, G.8
Takai, D.9
Gonzales, F.A.10
Jones, P.A.11
-
9
-
-
0035964869
-
Correlation between histone lysine methylation and developmental changes at the chicken β-globin locus
-
DOI 10.1126/science.1064413
-
Litt, M.D., Simpson, M., Gaszner, M., Allis, C.D. and Felsenfeld, G. (2002) Correlation between histone lysine methylation and developmental changes at the chicken b-globin locus. Science, 293, 2453-2455. (Pubitemid 32917326)
-
(2001)
Science
, vol.293
, Issue.5539
, pp. 2453-2455
-
-
Litt, M.D.1
Simpson, M.2
Gaszner, M.3
Allis, C.D.4
Felsenfeld, G.5
-
10
-
-
0035839110
-
Transitions in distinct histone H3 methylation patterns at the heterochromatin domain boundaries
-
DOI 10.1126/science.1064150
-
Noma, K., Allis, C.D. and Grewal, S. (2001) Transitions in distinct histone H3 methylation patterns at heterochromatin domain boundaries. Science, 293, 1150-1155. (Pubitemid 32758098)
-
(2001)
Science
, vol.293
, Issue.5532
, pp. 1150-1155
-
-
Noma, K.-I.1
Allis, C.D.2
Grewal, S.I.S.3
-
11
-
-
0037179716
-
Active genes are tri-methylated at K4 of histone H3
-
Santos-Rosa, H., Schneider, R., Bannister, A.J., Sherriff, J., Bernstein, B.E., Emre, N.C., Schreiber, S.L., Mellor, J. and Kouzarides, T. (2002) Active genes are tri-methylated at K4 of histone H3. Nature, 419, 407-411.
-
(2002)
Nature
, vol.419
, pp. 407-411
-
-
Santos-Rosa, H.1
Schneider, R.2
Bannister, A.J.3
Sherriff, J.4
Bernstein, B.E.5
Emre, N.C.6
Schreiber, S.L.7
Mellor, J.8
Kouzarides, T.9
-
12
-
-
1342268289
-
Histone H3 lysine 4 methylation patterns in higher eukaryotic genes
-
DOI 10.1038/ncb1076
-
Schneider, R., Bannister, A.J., Myers, F.A., Crane-Robinson, C. and Kouzarides, T. (2004) Histone H3 lysine 4 methylation patterns in higher eukaryotic genes. Nat. Cell Biol., 6, 73-77. (Pubitemid 38425733)
-
(2004)
Nature Cell Biology
, vol.6
, Issue.1
, pp. 73-77
-
-
Schneider, R.1
Bannister, A.J.2
Myers, F.A.3
Thorne, A.W.4
Crane-Robinson, C.5
Kouzarides, T.6
-
13
-
-
2642570305
-
The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote
-
DOI 10.1101/gad.1198204
-
Schubeler, D., MacAlpine, D.M., Scalzo, D., Wirbelauer, C., Kooperberg, C., van Leeuwen, F., Gottschling, D.E., O'Neill, L.P., Turner, B.M., Delrow, J. et al. (2004) The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote. Genes Dev., 18, 1263-1271. (Pubitemid 38720594)
-
(2004)
Genes and Development
, vol.18
, Issue.11
, pp. 1263-1271
-
-
Schubeler, D.1
MacAlpine, D.M.2
Scalzo, D.3
Wirbelauer, C.4
Kooperberg, C.5
Van Leeuwen, F.6
Gottschling, D.E.7
O'Neill, L.P.8
Turner, B.M.9
Delrow, J.10
Bell, S.P.11
Groudine, M.12
-
14
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
Heintzman, N.D., Hon, G.C., Hawkins, R.D., Kheradpour, P., Stark, A., Harp, L.F., Ye, Z., Lee, L.K., Stuart, R.K., Ching, C.W. et al. (2009) Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature, 459, 108-112.
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
Harp, L.F.6
Ye, Z.7
Lee, L.K.8
Stuart, R.K.9
Ching, C.W.10
-
15
-
-
0037138359
-
SET-domain proteins of the Su(var)3-9, E(z) and Trithorax families
-
DOI 10.1016/S0378-1119(02)00401-8, PII S0378111902004018
-
Alvarez-Venegas, R. and Avramova, Z. (2002) SET-domain proteins of the Su(var)3-9, E(z) and trithorax families. Gene, 285, 25-37. (Pubitemid 34246318)
-
(2002)
Gene
, vol.285
, Issue.1-2
, pp. 25-37
-
-
Alvarez-Venegas, R.1
Avramova, Z.2
-
16
-
-
77953644347
-
Reversal of histone methylation: Biochemical and molecular mechanisms of histone demethylases
-
Mosammaparast, N. and Shi, Y. (2010) Reversal of histone methylation: biochemical and molecular mechanisms of histone demethylases. Annu. Rev. Biochem., 79, 155-179.
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 155-179
-
-
Mosammaparast, N.1
Shi, Y.2
-
17
-
-
34447330337
-
Functional dissection of the ash2 and ash1 transcriptomes provides insights into the transcriptional basis of wing phenotypes and reveals conserved protein interactions
-
Beltran, S., Angulo, M., Pignatelli, M., Serras, F. and Corominas, M. (2007) Functional dissection of the ash2 and ash1 transcriptomes provides insights into the transcriptional basis of wing phenotypes and reveals conserved protein interactions. Genome Biol., 8, R67.
-
(2007)
Genome Biol.
, vol.8
-
-
Beltran, S.1
Angulo, M.2
Pignatelli, M.3
Serras, F.4
Corominas, M.5
-
18
-
-
0035818465
-
COMPASS: A complex of proteins associated with a trithorax-related SET domain protein
-
DOI 10.1073/pnas.231473398
-
Miller, T., Krogan, N.J., Dover, J., Erdjument-Bromage, H., Tempst, P., Johnston, M., Greenblatt, J.F. and Shilatifard, A. (2001) COMPASS: a complex of proteins associated with a trithorax-related SET domain protein. Proc. Natl Acad. Sci. USA, 98, 12902-12907. (Pubitemid 33051292)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.23
, pp. 12902-12907
-
-
Miller, T.1
Krogan, N.J.2
Dover, J.3
Erdjument-Bromage, H.4
Tempst, P.5
Johnston, M.6
Greenblatt, J.F.7
Shilatifard, A.8
-
19
-
-
0037039309
-
A trithorax-group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3
-
DOI 10.1073/pnas.221596698
-
Nagy, P.L., Griesenbeck, J., Kornberg, R.D. and Cleary, M.L. (2002) A trithorax-group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3. Proc. Natl Acad. Sci. USA, 99, 90-94. (Pubitemid 34060321)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.1
, pp. 90-94
-
-
Nagy, P.L.1
Griesenbec, J.2
Kornberg, R.D.3
Cleary, M.L.4
-
20
-
-
0037126594
-
The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4
-
DOI 10.1093/emboj/20.24.7137
-
Roguev, A., Schaft, D., Shevchenko, A., Pijnappel, W.W., Wilm, M., Aasland, R. and Stewart, A.F. (2001) The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4. EMBO J., 20, 7137-7148. (Pubitemid 34062305)
-
(2001)
EMBO Journal
, vol.20
, Issue.24
, pp. 7137-7148
-
-
Roguev, A.1
Schaft, D.2
Shevchenko, A.3
Pijnappel, W.W.M.P.4
Wilm, M.5
Aasland, R.6
Stewart, A.F.7
-
21
-
-
33748364351
-
Molecular regulation of H3K4 trimethylation by ASH2L, a shared subunit of MLL complexes
-
DOI 10.1038/nsmb1131, PII NSMB1131
-
Steward, M.M., Lee, J.S., O'Donovan, A., Wyatt, M., Bernstein, B.E. and Shilatifard, A. (2006) Molecular regulation of H3K4 trimethylation by ASH2L, a shared subunit of MLL complexes. Nat. Struct. Mol. Biol., 13, 852-854. (Pubitemid 44338781)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.9
, pp. 852-854
-
-
Steward, M.M.1
Lee, J.-S.2
O'Donovan, A.3
Wyatt, M.4
Bernstein, B.E.5
Shilatifard, A.6
-
22
-
-
33746849256
-
Regulation of MLL1 H3K4 methyltransferase activity by its core components
-
DOI 10.1038/nsmb1128, PII NSMB1128
-
Dou, Y., Milne, T.A., Ruthenburg, A.J., Lee, S., Lee, J.W., Verdine, G.L., Allis, C.D. and Roeder, R. (2006) Regulation of MLL1 H3K4 methyltransferase activity by its core components. Nat. Struct. Mol. Biol., 13, 713-719. (Pubitemid 44175164)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.8
, pp. 713-719
-
-
Dou, Y.1
Milne, T.A.2
Ruthenburg, A.J.3
Lee, S.4
Lee, J.W.5
Verdine, G.L.6
Allis, C.D.7
Roeder, R.G.8
-
23
-
-
33746851506
-
Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex
-
DOI 10.1038/nsmb1119, PII NSMB1119
-
Ruthenburg, A.J., Wang, W., Graybosch, D.M., Li, H., Allis, C.D., Patel, D.J. and Verdine, G.L. (2006) Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex. Nat. Struct. Mol. Biol., 13, 704-712. (Pubitemid 44175163)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.8
, pp. 704-712
-
-
Ruthenburg, A.J.1
Wang, W.2
Graybosch, D.M.3
Li, H.4
Allis, C.D.5
Patel, D.J.6
Verdine, G.L.7
-
24
-
-
36249027156
-
Recognition of trimethylated histone H3 Lysine 4 facilitates the recruitment of transcription postinitiation factors and Pre-mRNA splicing
-
DOI 10.1016/j.molcel.2007.11.010, PII S1097276507007447
-
Sims, R. Jr, Millhouse, S., Chen, C.F., Lewis, B.A., Erdjument-Bromage, H., Tempst, P., Manley, J.L. and Reinberg, D. (2007) Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. Mol. Cell, 28, 665-676. (Pubitemid 350137805)
-
(2007)
Molecular Cell
, vol.28
, Issue.4
, pp. 665-676
-
-
Sims III, R.J.1
Millhouse, S.2
Chen, C.-F.3
Lewis, B.A.4
Erdjument-Bromage, H.5
Tempst, P.6
Manley, J.L.7
Reinberg, D.8
-
25
-
-
79954552505
-
The super elongation complex (SEC) and MLL in development and disease
-
Smith, E., Lin, C. and Shilatifard, A. (2011) The super elongation complex (SEC) and MLL in development and disease. Genes Dev., 25, 661-672.
-
(2011)
Genes Dev.
, vol.25
, pp. 661-672
-
-
Smith, E.1
Lin, C.2
Shilatifard, A.3
-
26
-
-
79959394424
-
Genome-wide chromatin occupancy analysis reveals a role for ASH2 in transcriptional pausing
-
Perez-Lluch, S., Blanco, E., Carbonell, A., Raha, D., Snyder, M., Serras, F. and Corominas, M. (2011) Genome-wide chromatin occupancy analysis reveals a role for ASH2 in transcriptional pausing. Nucleic Acids Res., 39, 4628-4639.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 4628-4639
-
-
Perez-Lluch, S.1
Blanco, E.2
Carbonell, A.3
Raha, D.4
Snyder, M.5
Serras, F.6
Corominas, M.7
-
27
-
-
34147162969
-
Heterochromatin Formation in Drosophila Is Initiated through Active Removal of H3K4 Methylation by the LSD1 Homolog SU(VAR)3-3
-
DOI 10.1016/j.molcel.2007.02.025, PII S1097276507001426
-
Rudolph, T., Yonezawa, M., Lein, S., Heidrich, K., Kubicek, S., Schafer, C., Phalke, S., Walther, M., Schmidt, A., Jenuwein, T. et al. (2007) Heterochromatin formation in Drosophila is initiated through active removal of H3K4 methylation by the LSD1 homolog SU(VAR)3-3. Mol. Cell, 26, 103-115. (Pubitemid 46566423)
-
(2007)
Molecular Cell
, vol.26
, Issue.1
, pp. 103-115
-
-
Rudolph, T.1
Yonezawa, M.2
Lein, S.3
Heidrich, K.4
Kubicek, S.5
Schafer, C.6
Phalke, S.7
Walther, M.8
Schmidt, A.9
Jenuwein, T.10
Reuter, G.11
-
28
-
-
34247253752
-
The trithorax-group gene in Drosophila little imaginal discs encodes a trimethylated histone H3 Lys4 demethylase
-
DOI 10.1038/nsmb1217, PII NSMB1217
-
Eissenberg, J.C., Lee, M.G., Schneider, J., Ilvarsonn, A., Shiekhattar, R. and Shilatifard, A. (2007) The trithorax-group gene in Drosophila little imaginal discs encodes a trimethylated histone H3 Lys4 demethylase. Nat. Struct. Mol. Biol., 14, 344-346. (Pubitemid 46608342)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.4
, pp. 344-346
-
-
Eissenberg, J.C.1
Lee, M.G.2
Schneider, J.3
Ilvarsonn, A.4
Shiekhattar, R.5
Shilatifard, A.6
-
29
-
-
34247260388
-
The trithorax-group protein Lid is a histone H3 trimethyl-Lys4 demethylase
-
DOI 10.1038/nsmb1216, PII NSMB1216
-
Lee, N., Zhang, J., Klose, R.J., Erdjument-Bromage, H., Tempst, P., Jones, R.S. and Zhang, Y. (2007) The trithorax-group protein Lid is a histone H3 trimethyl-Lys4 demethylase. Nat. Struct. Mol. Biol., 14, 341-343. (Pubitemid 46608341)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.4
, pp. 341-343
-
-
Lee, N.1
Zhang, J.2
Klose, R.J.3
Erdjument-Bromage, H.4
Tempst, P.5
Jones, R.S.6
Zhang, Y.7
-
30
-
-
44349137520
-
Characterization of Drosophila melanogaster JmjC+N histone demethylases
-
DOI 10.1093/nar/gkn098
-
Lloret-Llinares, M., Carre, C., Vaquero, A., de Olano, N. and Azorn, F. (2008) Characterisation of Drosophila melanogaster JmjC+N histone demethylases. Nucleic Acids Res., 36, 2852-2863. (Pubitemid 351737178)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.9
, pp. 2852-2863
-
-
Lloret-llinares, M.1
Carre, C.2
Vaquero, A.3
De Olano, N.4
Azorin, F.5
-
31
-
-
33947152396
-
The Trithorax group protein Lid is a trimethyl histone H3K4 demethylase required for dMyc-induced cell growth
-
DOI 10.1101/gad.1523007
-
Secombe, J., Li, L., Carlos, L. and Eisenman, R.N. (2007) The Trithorax group protein Lid is a trimethyl histone H3K4 demethylase required for dMyc-induced cell growth. Genes Dev., 21, 537-551. (Pubitemid 46409469)
-
(2007)
Genes and Development
, vol.21
, Issue.5
, pp. 537-551
-
-
Secombe, J.1
Li, L.2
Carlos, L.3
Eisenman, R.N.4
-
32
-
-
70349183714
-
Histone chaperones ASF1 and NAP1 differentially modulate removal of active histone marks by LID-RPD3 complexes during NOTCH silencing
-
Moshkin, Y.M., Kan, T.W., Goodfellow, H., Bezstarosti, K., Maeda, R.K., Pilyugin, M., Karch, F., Bray, S.J., Demmers, J.A.A. and Verrijzer, C.P. (2009) Histone chaperones ASF1 and NAP1 differentially modulate removal of active histone marks by LID-RPD3 complexes during NOTCH silencing. Mol. Cell, 35, 782-793.
-
(2009)
Mol. Cell
, vol.35
, pp. 782-793
-
-
Moshkin, Y.M.1
Kan, T.W.2
Goodfellow, H.3
Bezstarosti, K.4
Maeda, R.K.5
Pilyugin, M.6
Karch, F.7
Bray, S.J.8
Demmers, J.A.A.9
Verrijzer, C.P.10
-
33
-
-
62849096399
-
The H3K4 demethylase Lid associates with and inhibits histone deacetylase Rpd3
-
Lee, N., Erdjument-Bromage, H., Tempst, P., Jones, R.S. and Zhang, Y. (2009) The H3K4 demethylase Lid associates with and inhibits histone deacetylase Rpd3. Mol. Cell. Biol., 29, 1401-1410.
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 1401-1410
-
-
Lee, N.1
Erdjument-Bromage, H.2
Tempst, P.3
Jones, R.S.4
Zhang, Y.5
-
34
-
-
78650860258
-
Functional antagonism between histone H3K4 demethylases in vivo
-
Di Stefano, L., Walker, J.A., Burgio, G., Corona, D.F., Mulligan, P., Naar, A.M. and Dyson, N.J. (2011) Functional antagonism between histone H3K4 demethylases in vivo. Genes Dev., 25, 17-28.
-
(2011)
Genes Dev.
, vol.25
, pp. 17-28
-
-
Di Stefano, L.1
Walker, J.A.2
Burgio, G.3
Corona, D.F.4
Mulligan, P.5
Naar, A.M.6
Dyson, N.J.7
-
35
-
-
77956643239
-
Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers
-
Vermeulen, M., Eberl, H.C., Matarese, F., Marks, H., Denissov, S., Butter, F., Lee, K.K., Olsen, J.V., Hyman, A.A., Stunnenberg, H.G. et al. (2010) Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers. Cell, 142, 967-980.
-
(2010)
Cell
, vol.142
, pp. 967-980
-
-
Vermeulen, M.1
Eberl, H.C.2
Matarese, F.3
Marks, H.4
Denissov, S.5
Butter, F.6
Lee, K.K.7
Olsen, J.V.8
Hyman, A.A.9
Stunnenberg, H.G.10
-
36
-
-
33847383585
-
Physical and Functional Association of a Trimethyl H3K4 Demethylase and Ring6a/MBLR, a Polycomb-like Protein
-
DOI 10.1016/j.cell.2007.02.004, PII S0092867407001833
-
Lee, M.G., Norman, J., Shilatifard, A. and Shiekhattar, R. (2007) Physical and functional association of a trimethyl H3K4 demethylase and Rin6a/MBLR, a polycomb-like protein. Cell, 128, 877-887. (Pubitemid 46341414)
-
(2007)
Cell
, vol.128
, Issue.5
, pp. 877-887
-
-
Lee, M.G.1
Norman, J.2
Shilatifard, A.3
Shiekhattar, R.4
-
37
-
-
77949366450
-
Histone demethylase KDM5A is an integral part of the core Notch-RBP-J repressor complex
-
Liefke, R., Oswald, F., Alvarado, C., Ferres-Marco, D., Mittler, G., Rodriguez, P., Dominguez, M. and Borggrefe, T. (2010) Histone demethylase KDM5A is an integral part of the core Notch-RBP-J repressor complex. Genes Dev., 24, 590-601.
-
(2010)
Genes Dev.
, vol.24
, pp. 590-601
-
-
Liefke, R.1
Oswald, F.2
Alvarado, C.3
Ferres-Marco, D.4
Mittler, G.5
Rodriguez, P.6
Dominguez, M.7
Borggrefe, T.8
-
38
-
-
49349114931
-
Genome-wide analysis of the H3K4 histone demethylase RBP2 reveals a transcriptional program controlling differentiation
-
Lopez-Bigas, N., Kisiel, T.A., Dewaal, D.C., Holmes, K.B., Volkert, T.L., Gupta, S., Love, J., Murray, H.L., Young, R.A. and Benevolenskaya, E.V. (2008) Genome-wide analysis of the H3K4 histone demethylase RBP2 reveals a transcriptional program controlling differentiation. Mol. Cell, 31, 520-530.
-
(2008)
Mol. Cell
, vol.31
, pp. 520-530
-
-
Lopez-Bigas, N.1
Kisiel, T.A.2
Dewaal, D.C.3
Holmes, K.B.4
Volkert, T.L.5
Gupta, S.6
Love, J.7
Murray, H.L.8
Young, R.A.9
Benevolenskaya, E.V.10
-
39
-
-
33947244845
-
PLU-1 Is an H3K4 Demethylase Involved in Transcriptional Repression and Breast Cancer Cell Proliferation
-
DOI 10.1016/j.molcel.2007.03.001, PII S1097276507001463
-
Yamane, K., Tateishi, K., Klose, R.J., Fang, J., Fabrizio, L.A., Erdjument-Bromage, H., Taylor-Papadimitriou, J., Tempst, P. and Zhang, Y. (2007) PLU-1 is an H3K4 demethylase involved in transcriptional repression and breast cancer cell proliferation. Mol. Cell, 25, 801-812. (Pubitemid 46436533)
-
(2007)
Molecular Cell
, vol.25
, Issue.6
, pp. 801-812
-
-
Yamane, K.1
Tateishi, K.2
Klose, R.J.3
Fang, J.4
Fabrizio, L.A.5
Erdjument-Bromage, H.6
Taylor-Papadimitriou, J.7
Tempst, P.8
Zhang, Y.9
-
40
-
-
79955008193
-
KDM5B regulates embryonic stem cell self-renewal and represses cryptic intragenic transcription
-
Xie, L., Pelz, C., Wang, W., Bashar, A., Varlamova, O., Shadle, S. and Impey, S. (2011) KDM5B regulates embryonic stem cell self-renewal and represses cryptic intragenic transcription. EMBO J., 30, 1473-1484.
-
(2011)
EMBO J.
, vol.30
, pp. 1473-1484
-
-
Xie, L.1
Pelz, C.2
Wang, W.3
Bashar, A.4
Varlamova, O.5
Shadle, S.6
Impey, S.7
-
41
-
-
81255160602
-
Jarid1b targets gene regulating development and is involved in neural differentiation
-
Schmitz, S.U., Albert, M., Malatesta, M., Morey, L., Johansen, J.V., Bak, M., Tommerup, N., Abarrategui, I. and Helin, K. (2011) Jarid1b targets gene regulating development and is involved in neural differentiation. EMBO J., 30, 4586-4600.
-
(2011)
EMBO J.
, vol.30
, pp. 4586-4600
-
-
Schmitz, S.U.1
Albert, M.2
Malatesta, M.3
Morey, L.4
Johansen, J.V.5
Bak, M.6
Tommerup, N.7
Abarrategui, I.8
Helin, K.9
-
42
-
-
0033786540
-
A screen for new trithorax group genes identified little imaginal dics, the Drosophila melanogaster homologue of human retinoblastoma binding protein 2
-
Gildea, J.J., Lopez, R. and Shearn, A. (2000) A screen for new trithorax group genes identified little imaginal dics, the Drosophila melanogaster homologue of human retinoblastoma binding protein 2. Genetics, 156, 645-663.
-
(2000)
Genetics
, vol.156
, pp. 645-663
-
-
Gildea, J.J.1
Lopez, R.2
Shearn, A.3
-
43
-
-
81855195123
-
The COMPASS family of H3K4 methylases in Drosophila
-
Mohan, M., Herz, H.M., Smith, E.R., Zhang, Y., Jackson, J., Washburn, M.P., Florens, L., Eissenberg, J.C. and Shilatifard, A. (2011) The COMPASS family of H3K4 methylases in Drosophila. Mol. Cell Biol., 31, 4310-4318.
-
(2011)
Mol. Cell Biol.
, vol.31
, pp. 4310-4318
-
-
Mohan, M.1
Herz, H.M.2
Smith, E.R.3
Zhang, Y.4
Jackson, J.5
Washburn, M.P.6
Florens, L.7
Eissenberg, J.C.8
Shilatifard, A.9
-
44
-
-
33746600716
-
Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins
-
DOI 10.1101/gad.388706
-
Papp, B. and Muller, J. (2006) Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins. Genes Dev., 20, 2041-2054. (Pubitemid 44157456)
-
(2006)
Genes and Development
, vol.20
, Issue.15
, pp. 2041-2054
-
-
Papp, B.1
Muller, J.2
-
45
-
-
0031080378
-
Analysis of chromatin structure by in vivo formaldehyde cross-linking
-
DOI 10.1006/meth.1996.0407
-
Orlando, V., Strutt, H. and Paro, R. (1997) Analysis of chromatin structure by in vivo formaldehyde cross-linking. Methods, 11, 205-214. (Pubitemid 27210226)
-
(1997)
Methods: A Companion to Methods in Enzymology
, vol.11
, Issue.2
, pp. 205-214
-
-
Orlando, V.1
Strutt, H.2
Paro, R.3
-
46
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman, R.C., Carey, V.J., Bates, D.M., Bolstad, B., Dettling, M., Dudoit, S., Ellis, B., Gautier, L., Ge, Y., Gentry, J. et al. (2004) Bioconductor: Open software development for computational biology and bioinformatics. Genome Biol., 5, R80.
-
(2004)
Genome Biol.
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
-
47
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. and Salzberg, S.L. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
48
-
-
84857187858
-
HtSeqTools: High-throughput sequencing quality control, processing and visualization in R
-
Planet, E., Stephan-Otto Attolini, C., Reina, O., Flores, O. and Rossell, D. (2011) htSeqTools: high-throughput sequencing quality control, processing and visualization in R. Bioinformatics, 28, 589-590.
-
(2011)
Bioinformatics
, vol.28
, pp. 589-590
-
-
Planet, E.1
Stephan-Otto Attolini, C.2
Reina, O.3
Flores, O.4
Rossell, D.5
-
49
-
-
78651271733
-
Integrative genomics viewer
-
Robinson, J.T., Thorvaldsdottir, H., Winckler, W., Guttman, M., Lander, E.S., Getz, G. and Mesirov, J.P. (2010) Integrative genomics viewer. Nat. Biotech., 29, 24-26.
-
(2010)
Nat. Biotech.
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdottir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
Getz, G.6
Mesirov, J.P.7
-
50
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
DOI 10.1038/nmeth.1226, PII NMETH.1226
-
Mortazavi, A., Williams, B.A., McCue, K., Schaeffer, L. and Wold, B. (2008) Mapping and quantifying mammalian transcriptomes by rna-seq. Nat. Methods, 7, 621-628. (Pubitemid 351911867)
-
(2008)
Nature Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
51
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry, R., Hobbs, B., Collin, B., Beazer-Barclay, Y.D., Antonellis, K.J., Scherf, U. and Speed, T.S. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics, 4, 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.1
Hobbs, B.2
Collin, B.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.S.7
-
52
-
-
43149118132
-
Semi-parametric differential expression analysis via partial mixture estimation
-
Rossell, D., Guerra, R. and Scott, C. (2008) Semi-parametric differential expression analysis via partial mixture estimation. Stat. Appl. Genet. Mol. Biol., 7, 1-15.
-
(2008)
Stat. Appl. Genet. Mol. Biol.
, vol.7
, pp. 1-15
-
-
Rossell, D.1
Guerra, R.2
Scott, C.3
-
53
-
-
43249125010
-
Transcription-coupled methylation of histone H3 at lysine 36 regulates dosage compensation by enhancing recruitment of the MSL complex in Drosophila melanogaster
-
DOI 10.1128/MCB.00006-08
-
Bell, O., Conrad, T., Kind, J., Wirbelauer, C., Akhtar, A. and Schubeler, D. (2008) Transcription-coupled methylation of histone H3 at lysine 36 regulates dosage compensation by enhancing recruitment of the MSL complex in Drosophila melanogaster. Mol. Cell Biol., 28, 3401-3409. (Pubitemid 351657102)
-
(2008)
Molecular and Cellular Biology
, vol.28
, Issue.10
, pp. 3401-3409
-
-
Bell, O.1
Conrad, T.2
Kind, J.3
Wirbelauer, C.4
Akhtar, A.5
Schubeier, D.6
-
54
-
-
0344022572
-
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
-
DOI 10.1016/S1097-2765(03)00092-3
-
Ng, H.H., Robert, F., Young, T.A. and Struhl, K. (2003) Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol. Cell, 11, 709-719. (Pubitemid 36385124)
-
(2003)
Molecular Cell
, vol.11
, Issue.3
, pp. 709-719
-
-
Ng, H.H.1
Robert, F.2
Young, R.A.3
Struhl, K.4
-
55
-
-
0037979272
-
Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II
-
DOI 10.1128/MCB.23.12.4207-4218.2003
-
Krogan, N.J., Kim, M., Tong, A., Golshani, A., Cagney, G., Canadien, V., Richards, D.P., Beattie, B.K., Emili, A., Boone, C. et al. (2003) Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II. Mol. Cell Biol., 23, 4207-4218. (Pubitemid 36666424)
-
(2003)
Molecular and Cellular Biology
, vol.23
, Issue.12
, pp. 4207-4218
-
-
Krogan, N.J.1
Kim, M.2
Tong, A.3
Golshani, A.4
Cagney, G.5
Canadien, V.6
Richards, D.P.7
Beattie, B.K.8
Emili, A.9
Boone, C.10
Shilatifard, A.11
Buratowski, S.12
Greenblatt, J.13
-
56
-
-
29144448731
-
Solution structure of the Set2-Rpb1 interacting domain of human Set2 and its interaction with the hyperphosphorylated C-terminal domain of Rpb1
-
DOI 10.1073/pnas.0506350102
-
Li, M., Phatnani, H.P., Guan, Z., Sage, H., Greenleaf, A.L. and Zhou, P. (2005) Solution structure of the Set2-Rpb1 interacting domain of Set2 and its interaction with the hyperphosphorylated C-terminal domain of Rpb1. Proc. Natl Acad. Sci. USA, 102, 17636-17641. (Pubitemid 41803549)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.49
, pp. 17636-17641
-
-
Li, M.1
Phatnani, H.P.2
Guan, Z.3
Sage, H.4
Greenleaf, A.L.5
Zhou, P.6
-
57
-
-
78649718101
-
Essential functions of the histone demethylase Lid
-
Li, L., Greer, C., Eisenman, R.N. and Secombe, J. (2010) Essential functions of the histone demethylase Lid. PLoS Genet., 6, e1001221.
-
(2010)
PLoS Genet.
, vol.6
-
-
Li, L.1
Greer, C.2
Eisenman, R.N.3
Secombe, J.4
-
58
-
-
67349266612
-
Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger
-
Wang, G.G., Song, J., Wang, Z., Dormann, H.L., Casadio, F., Li, H., Luo, J.-L., Patel, D.J. and Allis, C.D. (2009) Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger. Nature, 459, 847-851.
-
(2009)
Nature
, vol.459
, pp. 847-851
-
-
Wang, G.G.1
Song, J.2
Wang, Z.3
Dormann, H.L.4
Casadio, F.5
Li, H.6
Luo, J.-L.7
Patel, D.J.8
Allis, C.D.9
-
59
-
-
47549090254
-
NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly
-
DOI 10.1101/gad.1643208
-
Gilchrist, D.A., Nechaev, S., Lee, C., Ghosh, S.K., Collins, J.B., Li, L., Gilmour, D.S. and Adelman, K. (2008) NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly. Genes Dev., 22, 1921-1933. (Pubitemid 352008640)
-
(2008)
Genes and Development
, vol.22
, Issue.14
, pp. 1921-1933
-
-
Gilchrist, D.A.1
Nechaev, S.2
Lee, C.3
Ghosh, S.K.B.4
Collins, J.B.5
Li, L.6
Gilmour, D.S.7
Adelman, K.8
-
60
-
-
77949901729
-
Human negative elongation factor activates transcription and regulates alternative transcription initiation
-
Sun, J. and Li, R. (2010) Human negative elongation factor activates transcription and regulates alternative transcription initiation. J. Biol. Chem., 285, 6443-6452.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 6443-6452
-
-
Sun, J.1
Li, R.2
-
61
-
-
54349083294
-
DKDM2 couples histone H2A ubiquitylation to histone H3 demethylation during Polycomb group silencing
-
Lagarou, A., Mohd-Sarip, A., Moshkin, Y.M., Chalkley, G.E., Bezstarosti, K., Demmers, J.A. and Verrijzer, C.P. (2008) dKDM2 couples histone H2A ubiquitylation to histone H3 demethylation during Polycomb group silencing. Genes Dev., 22, 2799-2810.
-
(2008)
Genes Dev.
, vol.22
, pp. 2799-2810
-
-
Lagarou, A.1
Mohd-Sarip, A.2
Moshkin, Y.M.3
Chalkley, G.E.4
Bezstarosti, K.5
Demmers, J.A.6
Verrijzer, C.P.7
-
62
-
-
77049114334
-
Drosophila KDM2 is an H3K4me3 demethylase regulating nucleolar organization
-
Kavi, H.H. and Birchler, J.A. (2009) Drosophila KDM2 is an H3K4me3 demethylase regulating nucleolar organization. BMC Res. Notes, 2, 217.
-
(2009)
BMC Res. Notes
, vol.2
, pp. 217
-
-
Kavi, H.H.1
Birchler, J.A.2
-
63
-
-
84455200582
-
Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells
-
Ram, O., Goren, A., Amit, I., Shoresh, N., Yosef, N., Ernst, J., Kellis, M., Gymrek, M., Issner, R., Coyne, M. et al. (2011) Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells. Cell, 147, 1628-1639.
-
(2011)
Cell
, vol.147
, pp. 1628-1639
-
-
Ram, O.1
Goren, A.2
Amit, I.3
Shoresh, N.4
Yosef, N.5
Ernst, J.6
Kellis, M.7
Gymrek, M.8
Issner, R.9
Coyne, M.10
|