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Volumn 109, Issue 23, 2012, Pages 9125-9130

Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of Protocadherin-α gene expression

Author keywords

DNA looping; Stochastic gene expression

Indexed keywords

CADHERIN; COHESIN; PROTOCADHERIN ALPHA; TRANSCRIPTION FACTOR CTCF; UNCLASSIFIED DRUG;

EID: 84861917541     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1205074109     Document Type: Article
Times cited : (118)

References (32)
  • 1
    • 77958450147 scopus 로고    scopus 로고
    • Chemoaffinity revisited: Dscams, protocadherins, and neural circuit assembly
    • Zipursky SL, Sanes JR (2010) Chemoaffinity revisited: Dscams, protocadherins, and neural circuit assembly. Cell 143:343-353.
    • (2010) Cell , vol.143 , pp. 343-353
    • Zipursky, S.L.1    Sanes, J.R.2
  • 3
    • 0033063445 scopus 로고    scopus 로고
    • A striking organization of a large family of human neural cadherin-like cell adhesion genes
    • DOI 10.1016/S0092-8674(00)80789-8
    • Wu Q, Maniatis T (1999) A striking organization of a large family of human neural cadherin-like cell adhesion genes. Cell 97:779-790. (Pubitemid 29278051)
    • (1999) Cell , vol.97 , Issue.6 , pp. 779-790
    • Wu, Q.1    Maniatis, T.2
  • 4
    • 13944269194 scopus 로고    scopus 로고
    • Monoallelic yet combinatorial expression of variable exons of the protocadherin-alpha gene cluster in single neurons
    • Esumi S, et al. (2005) Monoallelic yet combinatorial expression of variable exons of the protocadherin-alpha gene cluster in single neurons. Nat Genet 37:171-176.
    • (2005) Nat Genet , vol.37 , pp. 171-176
    • Esumi, S.1
  • 5
    • 33750078697 scopus 로고    scopus 로고
    • Allelic gene regulation of Pcdh-alpha and Pcdh-gamma clusters involving both monoallelic and biallelic expression in single Purkinje cells
    • DOI 10.1074/jbc.M605677200
    • Kaneko R, et al. (2006) Allelic gene regulation of Pcdh-alpha and Pcdh-gamma clusters involving both monoallelic and biallelic expression in single Purkinje cells. J Biol Chem 281:30551-30560. (Pubitemid 44582111)
    • (2006) Journal of Biological Chemistry , vol.281 , Issue.41 , pp. 30551-30560
    • Kaneko, R.1    Kato, H.2    Kawamura, Y.3    Esumi, S.4    Hirayama, T.5    Hirabayashi, T.6    Yagi, T.7
  • 7
    • 0036682529 scopus 로고    scopus 로고
    • Molecular mechanisms governing Pcdh-gamam gene expression: Evidence for a multiple promoter and cis-alternative splicing model
    • DOI 10.1101/gad.1004802
    • Wang X, Su H, Bradley A (2002) Molecular mechanisms governing Pcdh-gamma gene expression: Evidence for a multiple promoter and cis-alternative splicing model. Genes Dev 16:1890-1905. (Pubitemid 34832919)
    • (2002) Genes and Development , vol.16 , Issue.15 , pp. 1890-1905
    • Wang, X.1    Su, H.2    Bradley, A.3
  • 10
    • 80054737703 scopus 로고    scopus 로고
    • Regulatory elements required for the activation and repression of the protocadherin-alpha gene cluster
    • Kehayova P, Monahan K, Chen W, Maniatis T (2011) Regulatory elements required for the activation and repression of the protocadherin-alpha gene cluster. Proc Natl Acad Sci USA 108:17195-17200.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 17195-17200
    • Kehayova, P.1    Monahan, K.2    Chen, W.3    Maniatis, T.4
  • 11
    • 80052405330 scopus 로고    scopus 로고
    • Identification of the cluster control region for the protocadherin-beta genes located beyond the protocadherin-gamma cluster
    • Yokota S, et al. (2011) Identification of the cluster control region for the protocadherin-beta genes located beyond the protocadherin-gamma cluster. J Biol Chem 286:31885-31895.
    • (2011) J Biol Chem , vol.286 , pp. 31885-31895
    • Yokota, S.1
  • 12
    • 77956132704 scopus 로고    scopus 로고
    • Regulation of protocadherin gene expression by multiple neuron-restrictive silencer elements scattered in the gene cluster
    • Tan YP, et al. (2010) Regulation of protocadherin gene expression by multiple neuron-restrictive silencer elements scattered in the gene cluster. Nucleic Acids Res 38: 4985-4997.
    • (2010) Nucleic Acids Res , vol.38 , pp. 4985-4997
    • Tan, Y.P.1
  • 13
    • 84862777531 scopus 로고    scopus 로고
    • Insulators, long-range interactions, and genome function
    • 10.1016/j.gde.2011.12.007
    • Yang J, Corces VG (2012) Insulators, long-range interactions, and genome function. Curr Opin Genet Dev, 10.1016/j.gde.2011.12.007.
    • (2012) Curr Opin Genet Dev
    • Yang, J.1    Corces, V.G.2
  • 15
    • 79953162010 scopus 로고    scopus 로고
    • Cohesin: Genomic insights into controlling gene transcription and development
    • Dorsett D (2011) Cohesin: Genomic insights into controlling gene transcription and development. Curr Opin Genet Dev 21:199-206.
    • (2011) Curr Opin Genet Dev , vol.21 , pp. 199-206
    • Dorsett, D.1
  • 16
    • 70349690201 scopus 로고    scopus 로고
    • Multiple organ system defects and transcriptional dysregulation in the Nipbl(+/-) mouse, a model of Cornelia de Lange syndrome
    • Kawauchi S, et al. (2009) Multiple organ system defects and transcriptional dysregulation in the Nipbl(+/-) mouse, a model of Cornelia de Lange syndrome. PLoS Genet 5:e1000650.
    • (2009) PLoS Genet , vol.5
    • Kawauchi, S.1
  • 17
    • 84860376812 scopus 로고    scopus 로고
    • Identification of CTCF as a master regulator of the clustered protocadherin genes
    • 10.1093/nar/gkr1260
    • Golan-Mashiach M, et al. (2011) Identification of CTCF as a master regulator of the clustered protocadherin genes. Nucleic Acids Res, 10.1093/nar/gkr1260.
    • (2011) Nucleic Acids Res
    • Golan-Mashiach, M.1
  • 18
    • 83255164884 scopus 로고    scopus 로고
    • Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution
    • Rhee HS, Pugh BF (2011) Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution. Cell 147:1408-1419.
    • (2011) Cell , vol.147 , pp. 1408-1419
    • Rhee, H.S.1    Pugh, B.F.2
  • 19
    • 79952267284 scopus 로고    scopus 로고
    • High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
    • Boyle AP, et al. (2011) High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells. Genome Res 21:456-464.
    • (2011) Genome Res , vol.21 , pp. 456-464
    • Boyle, A.P.1
  • 20
    • 0027034611 scopus 로고
    • Members of the USF family of helix-loop-helix proteins bind DNA as homo- as well as heterodimers
    • Sirito M, et al. (1992) Members of the USF family of helix-loop-helix proteins bind DNA as homo- as well as heterodimers. Gene Expr 2:231-240.
    • (1992) Gene Expr , vol.2 , pp. 231-240
    • Sirito, M.1
  • 21
    • 77951836691 scopus 로고    scopus 로고
    • A CTCF-independent role for cohesin in tissue-specific transcription
    • Schmidt D, et al. (2010) A CTCF-independent role for cohesin in tissue-specific transcription. Genome Res 20:578-588.
    • (2010) Genome Res , vol.20 , pp. 578-588
    • Schmidt, D.1
  • 22
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of ChIP-Seq (MACS)
    • Zhang Y, et al. (2008) Model-based analysis of ChIP-Seq (MACS). Genome Biol 9:R137.
    • (2008) Genome Biol , vol.9
    • Zhang, Y.1
  • 23
    • 73649141296 scopus 로고    scopus 로고
    • Frequent long-range epigenetic silencing of protocadherin gene clusters on chromosome 5q31 in Wilms' tumor
    • Dallosso AR, et al. (2009) Frequent long-range epigenetic silencing of protocadherin gene clusters on chromosome 5q31 in Wilms' tumor. PLoS Genet 5:e1000745.
    • (2009) PLoS Genet , vol.5
    • Dallosso, A.R.1
  • 24
    • 67549119096 scopus 로고    scopus 로고
    • CTCF: Master weaver of the genome
    • Phillips JE, Corces VG (2009) CTCF: Master weaver of the genome. Cell 137:1194-1211.
    • (2009) Cell , vol.137 , pp. 1194-1211
    • Phillips, J.E.1    Corces, V.G.2
  • 25
    • 45549101475 scopus 로고    scopus 로고
    • Relationship between DNA methylation states and transcription of individual isoforms encoded by the protocadherin-alpha gene cluster
    • Kawaguchi M, et al. (2008) Relationship between DNA methylation states and transcription of individual isoforms encoded by the protocadherin-alpha gene cluster. J Biol Chem 283:12064-12075.
    • (2008) J Biol Chem , vol.283 , pp. 12064-12075
    • Kawaguchi, M.1
  • 26
    • 79956324593 scopus 로고    scopus 로고
    • Conserved, developmentally regulated mechanism couples chromosomal looping and heterochromatin barrier activity at the homeobox gene A locus
    • Kim YJ, Cecchini KR, Kim TH (2011) Conserved, developmentally regulated mechanism couples chromosomal looping and heterochromatin barrier activity at the homeobox gene A locus. Proc Natl Acad Sci USA 108:7391-7396.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 7391-7396
    • Kim, Y.J.1    Cecchini, K.R.2    Kim, T.H.3
  • 28
    • 35748956435 scopus 로고    scopus 로고
    • An evaluation of 3C-based methods to capture DNA interactions
    • DOI 10.1038/nmeth1114, PII NMETH1114
    • Simonis M, Kooren J, de LaatW(2007) An evaluation of 3C-based methods to capture DNA interactions. Nat Methods 4:895-901. (Pubitemid 350042374)
    • (2007) Nature Methods , vol.4 , Issue.11 , pp. 895-901
    • Simonis, M.1    Kooren, J.2    De Laat, W.3
  • 29
    • 0031036380 scopus 로고    scopus 로고
    • Characterization of a CNS cell line, CAD, in which morphological differentiation is initiated by serum deprivation
    • Qi Y, Wang JK, McMillianM, Chikaraishi DM(1997) Characterization of a CNS cell line, CAD, in which morphological differentiation is initiated by serum deprivation. J Neurosci 17:1217-1225. (Pubitemid 27073725)
    • (1997) Journal of Neuroscience , vol.17 , Issue.4 , pp. 1217-1225
    • Qi, Y.1    Wang, J.K.T.2    McMillian, M.3    Chikaraishi, D.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.