메뉴 건너뛰기




Volumn 68, Issue 4, 2014, Pages 950-964

Genetic regulatory network motifs constrain adaptation through curvature in the landscape of mutational (co)variance

Author keywords

Divergence with gene flow; Evolutionary systems biology; Evolvability; G matrix; M matrix; Quantitative genetics

Indexed keywords

COVARIANCE ANALYSIS; DIVERGENCE; EVOLUTIONARY BIOLOGY; GENE FLOW; GENETIC VARIATION; MUTATION; REGULATORY APPROACH;

EID: 84898059584     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/evo.12313     Document Type: Article
Times cited : (9)

References (65)
  • 2
    • 77957366856 scopus 로고    scopus 로고
    • A general mechanism for network-dosage compensation in gene circuits
    • Acar, M., B. F. Pando, F. H. Arnold, M. B. Elowitz, and A. Van Oudenaarden 2010. A general mechanism for network-dosage compensation in gene circuits. Science 329:1656-1660.
    • (2010) Science , vol.329 , pp. 1656-1660
    • Acar, M.1    Pando, B.F.2    Arnold, F.H.3    Elowitz, M.B.4    Van Oudenaarden, A.5
  • 3
    • 60049087351 scopus 로고    scopus 로고
    • How much do genetic covariances alter the rate of adaptation?
    • Agrawal, A. F., and J. R. Stinchcombe 2009. How much do genetic covariances alter the rate of adaptation? Proc. R. Soc. Lond. B. Biol. Sci. 276:1183-1191.
    • (2009) Proc. R. Soc. Lond. B. Biol. Sci. , vol.276 , pp. 1183-1191
    • Agrawal, A.F.1    Stinchcombe, J.R.2
  • 5
    • 64549123454 scopus 로고    scopus 로고
    • Effects of epistasis and the evolution of genetic architecture: exact results for a 2-locus model
    • Alvarez-Castro, J. M., M. Kopp, and J. Hermisson 2009. Effects of epistasis and the evolution of genetic architecture: exact results for a 2-locus model. Theor. Popul. Biol. 75:109-122.
    • (2009) Theor. Popul. Biol. , vol.75 , pp. 109-122
    • Alvarez-Castro, J.M.1    Kopp, M.2    Hermisson, J.3
  • 6
    • 70350304567 scopus 로고    scopus 로고
    • Adaptation by introgression
    • Arnold, M. L., and N. H. Martin 2009. Adaptation by introgression. J. Biol. 8:82-84.
    • (2009) J. Biol. , vol.8 , pp. 82-84
    • Arnold, M.L.1    Martin, N.H.2
  • 7
    • 0035706455 scopus 로고    scopus 로고
    • The adaptive landscape as a conceptual bridge between micro-and macroevolution
    • Arnold, S. J., M. E. Pfrender, and A. G. Jones 2001. The adaptive landscape as a conceptual bridge between micro-and macroevolution. Genetica 112:9-32.
    • (2001) Genetica , vol.112 , pp. 9-32
    • Arnold, S.J.1    Pfrender, M.E.2    Jones, A.G.3
  • 9
    • 41949129310 scopus 로고    scopus 로고
    • From classical genetics to quantitative genetics to systems biology: modeling epistasis
    • Aylor, D. L., and Z. B. Zeng 2008. From classical genetics to quantitative genetics to systems biology: modeling epistasis. PLoS Genet. 4:e1000029.
    • (2008) PLoS Genet. , vol.4
    • Aylor, D.L.1    Zeng, Z.B.2
  • 10
    • 42549129218 scopus 로고    scopus 로고
    • From genotype to phenotype: systems biology meets natural variation
    • Benfey, P. N., and T. Mitchell-Olds 2008. From genotype to phenotype: systems biology meets natural variation. Science 320:495-497.
    • (2008) Science , vol.320 , pp. 495-497
    • Benfey, P.N.1    Mitchell-Olds, T.2
  • 11
    • 84871089697 scopus 로고    scopus 로고
    • Rapid and unpredictable changes of the G-matrix in a natural bird population over 25 years
    • Björklund, M., A. Husby, and L. Gustafsson 2013. Rapid and unpredictable changes of the G-matrix in a natural bird population over 25 years. J. Evol. Biol. 26:1-13.
    • (2013) J. Evol. Biol. , vol.26 , pp. 1-13
    • Björklund, M.1    Husby, A.2    Gustafsson, L.3
  • 13
    • 84857950781 scopus 로고    scopus 로고
    • Negative feedback confers mutational robustness in yeast transcription factor regulation
    • Denby, C. M., J. H. Im, C. Y. Richard, C. G. Pesce, and R. B. Brem 2012. Negative feedback confers mutational robustness in yeast transcription factor regulation. Proc. Nat. Acad. Sci. USA 109:3874-3878.
    • (2012) Proc. Nat. Acad. Sci. USA , vol.109 , pp. 3874-3878
    • Denby, C.M.1    Im, J.H.2    Richard, C.Y.3    Pesce, C.G.4    Brem, R.B.5
  • 14
    • 0033595250 scopus 로고    scopus 로고
    • On the origin of species by sympatric speciation
    • Dieckmann, U., and M. Doebeli 1999. On the origin of species by sympatric speciation. Nature 400:354-357.
    • (1999) Nature , vol.400 , pp. 354-357
    • Dieckmann, U.1    Doebeli, M.2
  • 16
    • 84865768717 scopus 로고    scopus 로고
    • Phenotypic plasticity facilitates mutational variance, genetic variance, and evolvability along the major axis of environmental variation
    • Draghi, J. A., and M. C. Whitlock 2012. Phenotypic plasticity facilitates mutational variance, genetic variance, and evolvability along the major axis of environmental variation. Evolution. 66:2891-2902.
    • (2012) Evolution. , vol.66 , pp. 2891-2902
    • Draghi, J.A.1    Whitlock, M.C.2
  • 17
    • 84872662588 scopus 로고    scopus 로고
    • Evolution in developmental phenotype space
    • Félix, M. A. 2012. Evolution in developmental phenotype space. Curr. Opin. Genet. Devel. 22:593-599.
    • (2012) Curr. Opin. Genet. Devel. , vol.22 , pp. 593-599
    • Félix, M.A.1
  • 18
    • 4344673117 scopus 로고    scopus 로고
    • Uncovering cryptic genetic variation
    • Gibson, G., and I. Dworkin 2004. Uncovering cryptic genetic variation. Nat. Rev. Genet. 5:681-690.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 681-690
    • Gibson, G.1    Dworkin, I.2
  • 19
    • 33846581918 scopus 로고    scopus 로고
    • Statistical epistasis is a generic feature of gene regulatory networks
    • Gjuvsland, A. B., B. J. Hayes, S. W. Omholt, and ñ. Carlborg 2007. Statistical epistasis is a generic feature of gene regulatory networks. Genetics 175: 411-420.
    • (2007) Genetics , vol.175 , pp. 411-420
    • Gjuvsland, A.B.1    Hayes, B.J.2    Omholt, S.W.3    Carlborg ñ4
  • 20
    • 34848880447 scopus 로고    scopus 로고
    • Effects of migration on the genetic covariance matrix
    • Guillaume, F., and M. C. Whitlock 2007. Effects of migration on the genetic covariance matrix. Evolution 61:2398-2409.
    • (2007) Evolution , vol.61 , pp. 2398-2409
    • Guillaume, F.1    Whitlock, M.C.2
  • 21
    • 77749249761 scopus 로고    scopus 로고
    • MCMC methods for multi-response generalized linear mixed models: the MCMCglmm R package
    • Hadfield, J. D. 2010. MCMC methods for multi-response generalized linear mixed models: the MCMCglmm R package. J. Stat. Soft. 33:1-22.
    • (2010) J. Stat. Soft. , vol.33 , pp. 1-22
    • Hadfield, J.D.1
  • 22
    • 49549087249 scopus 로고    scopus 로고
    • Measuring and comparing evolvability and constraint in multivariate characters
    • Hansen, T., and D. Houle 2008. Measuring and comparing evolvability and constraint in multivariate characters. J. Evol. Biol. 21:1201-1219.
    • (2008) J. Evol. Biol. , vol.21 , pp. 1201-1219
    • Hansen, T.1    Houle, D.2
  • 23
    • 4243207234 scopus 로고    scopus 로고
    • How should we explain variation in the genetic variance of traits?
    • Houle, D. 1998. How should we explain variation in the genetic variance of traits? Genetica 102:241-253.
    • (1998) Genetica , vol.102 , pp. 241-253
    • Houle, D.1
  • 24
    • 84875805864 scopus 로고    scopus 로고
    • Properties of spontaneous mutational variance and covariance for wing size and shape in Drosophia melanogaster
    • Houle, D., and J. Fierst 2013. Properties of spontaneous mutational variance and covariance for wing size and shape in Drosophia melanogaster. Evolution 67:1116-1130.
    • (2013) Evolution , vol.67 , pp. 1116-1130
    • Houle, D.1    Fierst, J.2
  • 25
    • 0030011757 scopus 로고    scopus 로고
    • Comparing mutational variabilities
    • Houle, D., B. Morikawa, and M. Lynch 1996. Comparing mutational variabilities. Genetics 143:1467-1483.
    • (1996) Genetics , vol.143 , pp. 1467-1483
    • Houle, D.1    Morikawa, B.2    Lynch, M.3
  • 27
    • 34547844147 scopus 로고    scopus 로고
    • Systematic discovery of functional modules and context-specific functional annotation of human genome
    • Huang, Y., H. Li, H. Hu, X. Yan, M. S. Waterman, H. Huang, and X. J. Zhou 2007. Systematic discovery of functional modules and context-specific functional annotation of human genome. Bioinformatics 23:i222-i229.
    • (2007) Bioinformatics , vol.23
    • Huang, Y.1    Li, H.2    Hu, H.3    Yan, X.4    Waterman, M.S.5    Huang, H.6    Zhou, X.J.7
  • 28
    • 0043286742 scopus 로고    scopus 로고
    • Stability of the G-matrix in a population experiencing pleiotropic mutation, stabilizing selection, and genetic drift
    • Jones, A. G., S. J. Arnold, and R. Bürger 2003. Stability of the G-matrix in a population experiencing pleiotropic mutation, stabilizing selection, and genetic drift. Evolution 57:1747-1760.
    • (2003) Evolution , vol.57 , pp. 1747-1760
    • Jones, A.G.1    Arnold, S.J.2    Bürger, R.3
  • 29
    • 4344635013 scopus 로고    scopus 로고
    • Evolution and stability of the G-matrix on a landscape with a moving optimum
    • Jones, A. G., S. J. Arnold, and R. Bürger 2004. Evolution and stability of the G-matrix on a landscape with a moving optimum. Evolution 58: 1639-1654.
    • (2004) Evolution , vol.58 , pp. 1639-1654
    • Jones, A.G.1    Arnold, S.J.2    Bürger, R.3
  • 30
    • 34047229695 scopus 로고    scopus 로고
    • The mutation matrix and the evolution of evolvability
    • Jones, A. G., S. J. Arnold, and R. Bürger 2007. The mutation matrix and the evolution of evolvability. Evolution 61:727-745.
    • (2007) Evolution , vol.61 , pp. 727-745
    • Jones, A.G.1    Arnold, S.J.2    Bürger, R.3
  • 31
    • 84868191034 scopus 로고    scopus 로고
    • The effects of stochastic and episodic movement of the optimum on the evolution of the G-matrix and the response of the trait mean to selection
    • Jones, A., R. Bürger, S. Arnold, P. Hohenlohe, and J. Uyeda 2012. The effects of stochastic and episodic movement of the optimum on the evolution of the G-matrix and the response of the trait mean to selection. J. Evol. Biol. 25:2210-2231.
    • (2012) J. Evol. Biol. , vol.25 , pp. 2210-2231
    • Jones, A.1    Bürger, R.2    Arnold, S.3    Hohenlohe, P.4    Uyeda, J.5
  • 33
    • 0013802404 scopus 로고
    • A stochastic model concerning the maintenance of genetic variability in quantitative characters
    • Kimura, M. 1965. A stochastic model concerning the maintenance of genetic variability in quantitative characters. Proc. Nat. Acad. Sci. USA 54:731-736.
    • (1965) Proc. Nat. Acad. Sci. USA , vol.54 , pp. 731-736
    • Kimura, M.1
  • 34
    • 0035706575 scopus 로고    scopus 로고
    • Variation, selection and evolution of function-valued traits
    • Kingsolver, J. G., R. Gomulkiewicz, and P. A. Carter 2001. Variation, selection and evolution of function-valued traits. Genetica 112:87-104.
    • (2001) Genetica , vol.112 , pp. 87-104
    • Kingsolver, J.G.1    Gomulkiewicz, R.2    Carter, P.A.3
  • 35
    • 65649116390 scopus 로고    scopus 로고
    • Patterns of quantitative genetic variation in multiple dimensions
    • Kirkpatrick, M. 2009. Patterns of quantitative genetic variation in multiple dimensions. Genetica 136:271-284.
    • (2009) Genetica , vol.136 , pp. 271-284
    • Kirkpatrick, M.1
  • 36
    • 2942724484 scopus 로고    scopus 로고
    • Estimating genetic parameters in natural populations using the 'animal model
    • Kruuk, L. E. 2004. Estimating genetic parameters in natural populations using the 'animal model'. Philos. Trans. R. Soc. Lond. B Biol. Sci. 359:873-890.
    • (2004) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.359 , pp. 873-890
    • Kruuk, L.E.1
  • 37
    • 0001288442 scopus 로고
    • Quantitative genetic-analysis of multivariate evolution, applied to brain-body size allometry
    • Lande, R. 1979. Quantitative genetic-analysis of multivariate evolution, applied to brain-body size allometry. Evolution 33:402-416.
    • (1979) Evolution , vol.33 , pp. 402-416
    • Lande, R.1
  • 38
    • 0001214721 scopus 로고
    • The measurement of selection on correlated characters
    • Lande, R., and S. J. Arnold 1983. The measurement of selection on correlated characters. Evolution 37:1210-1226.
    • (1983) Evolution , vol.37 , pp. 1210-1226
    • Lande, R.1    Arnold, S.J.2
  • 39
    • 0001508169 scopus 로고    scopus 로고
    • Parameter expansion to accelerate EM: the PX-EM algorithm
    • Liu, C., D. B. Rubin, and Y. N. Wu 1998. Parameter expansion to accelerate EM: the PX-EM algorithm. Biometrika 85:755-770.
    • (1998) Biometrika , vol.85 , pp. 755-770
    • Liu, C.1    Rubin, D.B.2    Wu, Y.N.3
  • 40
    • 34548724489 scopus 로고    scopus 로고
    • The evolution of genetic networks by non-adaptive processes
    • Lynch, M. 2007. The evolution of genetic networks by non-adaptive processes. Nat. Rev. Genet. 8:803-813.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 803-813
    • Lynch, M.1
  • 42
    • 72249083317 scopus 로고    scopus 로고
    • The developmental basis of variational modularity: insights from quantitative genetics, morphometrics, and developmental biology
    • Mitteroecker, P. 2009. The developmental basis of variational modularity: insights from quantitative genetics, morphometrics, and developmental biology. Evol. Biol. 36:377-385.
    • (2009) Evol. Biol. , vol.36 , pp. 377-385
    • Mitteroecker, P.1
  • 43
    • 84866784262 scopus 로고    scopus 로고
    • Evolutionary systems biology: historical and philosophical perspectives on an emerging synthesis
    • O'Malley, M. A. 2012. Evolutionary systems biology: historical and philosophical perspectives on an emerging synthesis. Evol. Syst. Biol. 751:1-28.
    • (2012) Evol. Syst. Biol. , vol.751 , pp. 1-28
    • O'Malley, M.A.1
  • 44
    • 0034046086 scopus 로고    scopus 로고
    • Gene regulatory networks generating the phenomena of additivity, dominance and epistasis
    • Omholt, S. W., E. Plahte, L. Øyehaug, and K. Xiang 2000. Gene regulatory networks generating the phenomena of additivity, dominance and epistasis. Genetics 155:969-980.
    • (2000) Genetics , vol.155 , pp. 969-980
    • Omholt, S.W.1    Plahte, E.2    Øyehaug, L.3    Xiang, K.4
  • 45
    • 79960003271 scopus 로고    scopus 로고
    • Negative feedback in the bone morphogenetic protein 4 (BMP4) synexpression group governs its dynamic signaling range and canalizes development
    • Paulsen, M., S. Legewie, R. Eils, E. Karaulanov, and C. Niehrs 2011. Negative feedback in the bone morphogenetic protein 4 (BMP4) synexpression group governs its dynamic signaling range and canalizes development. Proc. Nat. Acad. Sci. USA 108:10202-10207.
    • (2011) Proc. Nat. Acad. Sci. USA , vol.108 , pp. 10202-10207
    • Paulsen, M.1    Legewie, S.2    Eils, R.3    Karaulanov, E.4    Niehrs, C.5
  • 46
    • 54149088214 scopus 로고    scopus 로고
    • Epistasis, the essential role of gene interactions in the structure and evolution of genetic systems
    • Phillips, P. C. 2008. Epistasis, the essential role of gene interactions in the structure and evolution of genetic systems. Nat. Rev. Genet. 9:855-867.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 855-867
    • Phillips, P.C.1
  • 47
    • 76749127527 scopus 로고    scopus 로고
    • Genotype-phenotype mapping and the end of the 'genes as blueprint' metaphor
    • Pigliucci, M. 2010. Genotype-phenotype mapping and the end of the 'genes as blueprint' metaphor. Philos. Trans. R. Soc. B Biol. Sci. 365:557-566.
    • (2010) Philos. Trans. R. Soc. B Biol. Sci. , vol.365 , pp. 557-566
    • Pigliucci, M.1
  • 49
    • 42249096690 scopus 로고    scopus 로고
    • Evolutionary quantitative genetics
    • W. J. Fox, ed. Oxford Univ. Press, Oxford, U.K.
    • Roff, D. 2006. Evolutionary quantitative genetics. In W. J. Fox, ed. Evolutionary genetics: concepts and case studies. Oxford Univ. Press, Oxford, U.K.
    • (2006) Evolutionary genetics: concepts and case studies
    • Roff, D.1
  • 50
    • 0029838036 scopus 로고    scopus 로고
    • Adaptive radiation along genetic lines of least resistance
    • Schluter, D. 1996. Adaptive radiation along genetic lines of least resistance. Evolution 50:1766-1774.
    • (1996) Evolution , vol.50 , pp. 1766-1774
    • Schluter, D.1
  • 51
    • 0033774150 scopus 로고    scopus 로고
    • Population dependent Fourier decomposition of fitness landscapes over recombination spaces: evolvability of complex characters
    • Stadler, P. F., R. Seitz, and G. N. P. Wagner 2000. Population dependent Fourier decomposition of fitness landscapes over recombination spaces: evolvability of complex characters. Bull. Math. Biol. 62:399-428.
    • (2000) Bull. Math. Biol. , vol.62 , pp. 399-428
    • Stadler, P.F.1    Seitz, R.2    Wagner, G.N.P.3
  • 52
    • 0036644206 scopus 로고    scopus 로고
    • Comparative quantitative genetics: evolution of the G matrix
    • Steppan, S. J., P. C. Phillips, and D. Houle 2002. Comparative quantitative genetics: evolution of the G matrix. Trends Ecol. Evol. 17:320-327.
    • (2002) Trends Ecol. Evol. , vol.17 , pp. 320-327
    • Steppan, S.J.1    Phillips, P.C.2    Houle, D.3
  • 53
    • 0141993704 scopus 로고    scopus 로고
    • A gene-coexpression network for global discovery of conserved genetic modules
    • Stuart, J. M., E. Segal, D. Koller, and S. K. Kim 2003. A gene-coexpression network for global discovery of conserved genetic modules. Science 302:249-255.
    • (2003) Science , vol.302 , pp. 249-255
    • Stuart, J.M.1    Segal, E.2    Koller, D.3    Kim, S.K.4
  • 54
    • 79957636952 scopus 로고    scopus 로고
    • Hierarchical cluster-based partial least squares regression (HC-PLSR) is an efficient tool for metamodelling of nonlinear dynamic models
    • Tøndel, K., U. G. Indahl, A. B. Gjuvsland, J. O. Vik, P. Hunter, S. W. Omholt, and H. Martens 2011. Hierarchical cluster-based partial least squares regression (HC-PLSR) is an efficient tool for metamodelling of nonlinear dynamic models. BMC Syst. Biol. 5:90.
    • (2011) BMC Syst. Biol. , vol.5 , pp. 90
    • Tøndel, K.1    Indahl, U.G.2    Gjuvsland, A.B.3    Vik, J.O.4    Hunter, P.5    Omholt, S.W.6    Martens, H.7
  • 55
    • 84873055247 scopus 로고    scopus 로고
    • Lost in the map
    • Travisano, M., and R. G. Shaw 2013. Lost in the map. Evolution 67:305-314.
    • (2013) Evolution , vol.67 , pp. 305-314
    • Travisano, M.1    Shaw, R.G.2
  • 56
    • 0022233074 scopus 로고
    • Effects of pleiotropy on predictions concerning mutation-selection balance for polygenic traits
    • Turelli, M. 1985. Effects of pleiotropy on predictions concerning mutation-selection balance for polygenic traits. Genetics 111:165-195.
    • (1985) Genetics , vol.111 , pp. 165-195
    • Turelli, M.1
  • 57
    • 62849096643 scopus 로고    scopus 로고
    • Shadows of complexity: what biological networks reveal about epistasis and pleiotropy
    • Tyler, A. L., F. W. Asselbergs, S. M. Williams, and J. H. Moore 2009. Shadows of complexity: what biological networks reveal about epistasis and pleiotropy. BioEssays 31:220-227.
    • (2009) BioEssays , vol.31 , pp. 220-227
    • Tyler, A.L.1    Asselbergs, F.W.2    Williams, S.M.3    Moore, J.H.4
  • 58
    • 0029661332 scopus 로고    scopus 로고
    • Perspective: complex adaptations and the evolution of evolvability
    • Wagner, G. P., and L. Altenberg 1996. Perspective: complex adaptations and the evolution of evolvability. Evolution 50:967-976.
    • (1996) Evolution , vol.50 , pp. 967-976
    • Wagner, G.P.1    Altenberg, L.2
  • 59
    • 76249110585 scopus 로고    scopus 로고
    • Abundant genetic variation+ strong selection = multivariate genetic constraints: a geometric view of adaptation
    • Walsh, B., and M. W. Blows 2009. Abundant genetic variation+ strong selection = multivariate genetic constraints: a geometric view of adaptation. Annu. Rev. Ecol. Evol. Syst. 40:41-59.
    • (2009) Annu. Rev. Ecol. Evol. Syst. , vol.40 , pp. 41-59
    • Walsh, B.1    Blows, M.W.2
  • 62
    • 0001771498 scopus 로고
    • Evolution in Mendelian populations
    • Wright, S. 1931. Evolution in Mendelian populations. Genetics 16:97-159.
    • (1931) Genetics , vol.16 , pp. 97-159
    • Wright, S.1
  • 65
    • 62749129877 scopus 로고    scopus 로고
    • Understanding quantitative genetics in the systems biology era
    • Zhu, M., M. Yu, and S. Zhao 2009. Understanding quantitative genetics in the systems biology era. Inter. J. Biol. Sci. 5:161-170.
    • (2009) Inter. J. Biol. Sci. , vol.5 , pp. 161-170
    • Zhu, M.1    Yu, M.2    Zhao, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.