-
1
-
-
0004245694
-
Handbook of mathematical functions with formulas, graphs, and mathematical tables
-
New York.
-
Abramowitz, M., and I. Stegun 1964. Handbook of mathematical functions with formulas, graphs, and mathematical tables. Dover, New York.
-
(1964)
Dover
-
-
Abramowitz, M.1
Stegun, I.2
-
2
-
-
33845734583
-
The distribution of beneficial mutant effects under strong selection
-
Barrett, R., L. M'Gonigle, and S. Otto 2006a. The distribution of beneficial mutant effects under strong selection. Genetics 174:2071-2079.
-
(2006)
Genetics
, vol.174
, pp. 2071-2079
-
-
Barrett, R.1
M'Gonigle, L.2
Otto, S.3
-
3
-
-
33645112661
-
Mutations of intermediate effect are responsible for adaptation in evolving Pseudomonas fluorescens populations
-
Barrett, R. D. H., R. Craig MacLean, and G. Bell 2006b. Mutations of intermediate effect are responsible for adaptation in evolving Pseudomonas fluorescens populations. Biol. Lett. 2:236-238.
-
(2006)
Biol. Lett.
, vol.2
, pp. 236-238
-
-
Barrett, R.D.H.1
MacLean, R.C.2
Bell, G.3
-
4
-
-
70350641005
-
Genome evolution and adaptation in a long-term experiment with Escherichia coli
-
Barrick, J. E., D. S. Yu, S. H. Yoon, H. Jeong, T. K. Oh, D. Schneider, R. E. Lenski, and J. F. Kim 2009. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461:1243-1247.
-
(2009)
Nature
, vol.461
, pp. 1243-1247
-
-
Barrick, J.E.1
Yu, D.S.2
Yoon, S.H.3
Jeong, H.4
Oh, T.K.5
Schneider, D.6
Lenski, R.E.7
Kim, J.F.8
-
5
-
-
81255211330
-
Cost of adaptation and fitness effects of beneficial mutations in Pseudomonas fluorescens
-
Bataillon, T., T. Zhang, and R. Kassen 2011. Cost of adaptation and fitness effects of beneficial mutations in Pseudomonas fluorescens. Genetics 189:939-949.
-
(2011)
Genetics
, vol.189
, pp. 939-949
-
-
Bataillon, T.1
Zhang, T.2
Kassen, R.3
-
7
-
-
0034035485
-
Big-benefit mutations in a bacteriophage inhibited with heat
-
Bull, J. J., M. R. Badgett, and H. A. Wichman 2000. Big-benefit mutations in a bacteriophage inhibited with heat. Mol. Biol. Evol. 17:942-950.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 942-950
-
-
Bull, J.J.1
Badgett, M.R.2
Wichman, H.A.3
-
8
-
-
16844387465
-
The first steps in adaptive evolution
-
Bull, J. J., and S. P. Otto 2005. The first steps in adaptive evolution. Nat. Genet. 37:342-343.
-
(2005)
Nat. Genet.
, vol.37
, pp. 342-343
-
-
Bull, J.J.1
Otto, S.P.2
-
9
-
-
0033055004
-
Evolution by small steps and rugged landscapes in the RNA virus phi6
-
Burch, C. L., and L. Chao 1999. Evolution by small steps and rugged landscapes in the RNA virus phi6. Genetics 151:921-927.
-
(1999)
Genetics
, vol.151
, pp. 921-927
-
-
Burch, C.L.1
Chao, L.2
-
10
-
-
27944484104
-
Adaptive walk on complex networks
-
Campos, P. R. A., and F. G. B. Moreira 2005. Adaptive walk on complex networks. Phys. Rev. E 71:061921.
-
(2005)
Phys. Rev.
, vol.71 E
, pp. 061921
-
-
Campos, P.R.A.1
Moreira, F.G.B.2
-
11
-
-
76549129324
-
Adaptive landscapes and protein evolution
-
Carneiro, C., and D. Hartl 2010. Adaptive landscapes and protein evolution. Proc. Natl. Acad. Sci. USA 107:1747-1751.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 1747-1751
-
-
Carneiro, C.1
Hartl, D.2
-
12
-
-
51149084518
-
Global fluctuations in physical systems: a subtle interplay between sum and extreme value statistics
-
Clusel, M., and E. Bertin 2008. Global fluctuations in physical systems: a subtle interplay between sum and extreme value statistics. Int. J. Mod. Phys. B 22:3311-3368.
-
(2008)
Int. J. Mod. Phys. B
, vol.22
, pp. 3311-3368
-
-
Clusel, M.1
Bertin, E.2
-
14
-
-
33847314378
-
Beneficial mutation-selection balance and the effect of linkage on positive selection
-
Desai, M., and D. Fisher 2007. Beneficial mutation-selection balance and the effect of linkage on positive selection. Genetics 176:1759-1798.
-
(2007)
Genetics
, vol.176
, pp. 1759-1798
-
-
Desai, M.1
Fisher, D.2
-
15
-
-
0031916242
-
Rates of spontaneous mutation
-
Drake, J. W., B. Charlesworth, D. Charlesworth, and J. F. Crow 1998. Rates of spontaneous mutation. Genetics 148:1667-1686.
-
(1998)
Genetics
, vol.148
, pp. 1667-1686
-
-
Drake, J.W.1
Charlesworth, B.2
Charlesworth, D.3
Crow, J.F.4
-
16
-
-
0038441327
-
Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation
-
Elena, S. F., and R. E. Lenski 2003. Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat. Rev. Genet. 4:457-469.
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 457-469
-
-
Elena, S.F.1
Lenski, R.E.2
-
17
-
-
34447546660
-
The distribution of fitness effects of new mutations
-
Eyre-Walker, A., and P. Keightley 2007. The distribution of fitness effects of new mutations. Nat. Rev. Genet. 8:610.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 610
-
-
Eyre-Walker, A.1
Keightley, P.2
-
20
-
-
0000017979
-
Evolution in a rugged fitness landscape
-
Flyvbjerg, H., and B. Lautrup 1992. Evolution in a rugged fitness landscape. Phys. Rev. A 46:6714-6723.
-
(1992)
Phys. Rev. A
, vol.46
, pp. 6714-6723
-
-
Flyvbjerg, H.1
Lautrup, B.2
-
22
-
-
2542583245
-
The fate of competing beneficial mutations in an asexual populations
-
Gerrish, P. J., and R. E. Lenski 1998. The fate of competing beneficial mutations in an asexual populations. Genetica 102:127-144.
-
(1998)
Genetica
, vol.102
, pp. 127-144
-
-
Gerrish, P.J.1
Lenski, R.E.2
-
23
-
-
80054906747
-
The length of adaptive walks is insensitive to starting fitness in Aspergillus nidulans
-
Gifford, D. R., S. E. Schoustra, and R. Kassen 2011. The length of adaptive walks is insensitive to starting fitness in Aspergillus nidulans. Evolution 65:3070-3078.
-
(2011)
Evolution
, vol.65
, pp. 3070-3078
-
-
Gifford, D.R.1
Schoustra, S.E.2
Kassen, R.3
-
24
-
-
0020740521
-
A simple stochastic gene substitution process
-
Gillespie, J. H. 1983. A simple stochastic gene substitution process. Theor. Popul. Biol. 23:202-215.
-
(1983)
Theor. Popul. Biol.
, vol.23
, pp. 202-215
-
-
Gillespie, J.H.1
-
26
-
-
84872045759
-
Evolution of clonal populations approaching a fitness peak
-
Gordo, I., and P. R. A. Campos 2012. Evolution of clonal populations approaching a fitness peak. Biol. Lett. 9:20120239.
-
(2012)
Biol. Lett.
, vol.9
, pp. 20120239
-
-
Gordo, I.1
Campos, P.R.A.2
-
27
-
-
0036885674
-
The effects of genetic drift in experimental evolution
-
Heffernan, J. M., and L. M. Wahl 2002. The effects of genetic drift in experimental evolution. Theo. Pop. Biol. 62:349-356.
-
(2002)
Theo. Pop. Biol.
, vol.62
, pp. 349-356
-
-
Heffernan, J.M.1
Wahl, L.M.2
-
28
-
-
1942453330
-
Stochastic tunnels in evolutionary dynamics
-
Iwasa, Y., F. Michor, and M. A. Nowak 2004. Stochastic tunnels in evolutionary dynamics. Genetics 166:1571-1579.
-
(2004)
Genetics
, vol.166
, pp. 1571-1579
-
-
Iwasa, Y.1
Michor, F.2
Nowak, M.A.3
-
29
-
-
79955803238
-
Extreme value distributions for weakly correlated fitnesses in block model
-
Jain, K. 2011a. Extreme value distributions for weakly correlated fitnesses in block model. J. Stat. Mech. :P04020.
-
(2011)
J. Stat. Mech.
-
-
Jain, K.1
-
30
-
-
82355170478
-
Number of adaptive steps to a local fitness peak
-
Jain, K. 2011b. Number of adaptive steps to a local fitness peak. EPL 96:58006.
-
(2011)
EPL
, vol.96
, pp. 58006
-
-
Jain, K.1
-
31
-
-
34249002682
-
Deterministic and stochastic regimes of asexual evolution on rugged fitness landscapes
-
Jain, K., and J. Krug
-
Jain, K., and J. Krug. 2007. Deterministic and stochastic regimes of asexual evolution on rugged fitness landscapes. Genetics 175:1275.
-
(2007)
Genetics
, vol.175
, pp. 1275
-
-
-
32
-
-
79957438524
-
Evolutionary advantage of small populations on complex fitness landscapes
-
Jain, K., J. Krug, and S.-C. Park 2011. Evolutionary advantage of small populations on complex fitness landscapes. Evolution 65: 1945.
-
(2011)
Evolution
, vol.65
, pp. 1945
-
-
Jain, K.1
Krug, J.2
Park, S.-C.3
-
33
-
-
81255196495
-
Multiple adaptive substitutions during evolution in novel environments
-
Jain, K., and S. Seetharaman 2011. Multiple adaptive substitutions during evolution in novel environments. Genetics 189:1029-1043.
-
(2011)
Genetics
, vol.189
, pp. 1029-1043
-
-
Jain, K.1
Seetharaman, S.2
-
34
-
-
59449088633
-
A general extreme value theory model for the adaptation of DNA sequences under strong selection and weak mutation
-
Joyce, P., D. R. Rokyta, C. J. Beisel, and H. A. Orr 2008. A general extreme value theory model for the adaptation of DNA sequences under strong selection and weak mutation. Genetics 180:1627-1643.
-
(2008)
Genetics
, vol.180
, pp. 1627-1643
-
-
Joyce, P.1
Rokyta, D.R.2
Beisel, C.J.3
Orr, H.A.4
-
35
-
-
33645394597
-
Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria
-
Kassen, R., and T. Bataillon 2006. Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria. Nat. Genet. 38:484-488.
-
(2006)
Nat. Genet.
, vol.38
, pp. 484-488
-
-
Kassen, R.1
Bataillon, T.2
-
37
-
-
0000800333
-
On the probability of fixation of mutant genes in a population
-
Kimura, M. 1962. On the probability of fixation of mutant genes in a population. Genetics 47:713-719.
-
(1962)
Genetics
, vol.47
, pp. 713-719
-
-
Kimura, M.1
-
39
-
-
79955590028
-
Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape
-
Kvitek, D. J., and G. Sherlock 2011. Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape. PLoS Genetics 7:e1002056.
-
(2011)
PLoS Genetics
, vol.7
-
-
Kvitek, D.J.1
Sherlock, G.2
-
40
-
-
84864290431
-
Magnitude and sign epistasis among deleterious mutations in a positive-sense plant RNA virus
-
Lalić, J., and S. F. Elena 2012. Magnitude and sign epistasis among deleterious mutations in a positive-sense plant RNA virus. Heredity 109:71-77.
-
(2012)
Heredity
, vol.109
, pp. 71-77
-
-
Lalić, J.1
Elena, S.F.2
-
41
-
-
62149084484
-
The distribution of fitness effects of beneficial mutations in Pseudomonas aeruginosa
-
MacLean, R. C., and A. Buckling 2009. The distribution of fitness effects of beneficial mutations in Pseudomonas aeruginosa. PLoS Genetics 5:e1000406.
-
(2009)
PLoS Genetics
, vol.5
-
-
MacLean, R.C.1
Buckling, A.2
-
42
-
-
79251553136
-
Diminishing returns from beneficial mutations and pervasive epistasis shape the fitness landscape for rifampicin resistance in Pseudomonas aeruginosa
-
MacLean, R. C., G. G. Perron, and A. Gardner 2010. Diminishing returns from beneficial mutations and pervasive epistasis shape the fitness landscape for rifampicin resistance in Pseudomonas aeruginosa. Genetics 186:1345-1354.
-
(2010)
Genetics
, vol.186
, pp. 1345-1354
-
-
MacLean, R.C.1
Perron, G.G.2
Gardner, A.3
-
43
-
-
78951475034
-
Mutational effects and population dynamics during viral adaptation challenge current models
-
Miller, C. R., P. Joyce, and H. Wichman 2011. Mutational effects and population dynamics during viral adaptation challenge current models. Genetics 187:185-202.
-
(2011)
Genetics
, vol.187
, pp. 185-202
-
-
Miller, C.R.1
Joyce, P.2
Wichman, H.3
-
44
-
-
80054760130
-
Adaptive walks and extreme value theory
-
Neidhart, J., and J. Krug 2011. Adaptive walks and extreme value theory. Phys. Rev. Lett. 107:178102.
-
(2011)
Phys. Rev. Lett.
, vol.107
, pp. 178102
-
-
Neidhart, J.1
Krug, J.2
-
45
-
-
0036340979
-
The population genetics of adaptation: the adaptation of DNA sequences
-
Orr, H. A. 2002. The population genetics of adaptation: the adaptation of DNA sequences. Evolution 56:1317-1330.
-
(2002)
Evolution
, vol.56
, pp. 1317-1330
-
-
Orr, H.A.1
-
46
-
-
0037398394
-
The distribution of fitness effects among beneficial mutations
-
Orr, H. A. 2003a. The distribution of fitness effects among beneficial mutations. Genetics 163:1519-1526.
-
(2003)
Genetics
, vol.163
, pp. 1519-1526
-
-
Orr, H.A.1
-
47
-
-
0037219370
-
A minimum on the mean number of steps taken in adaptive walks
-
Orr, H. A. 2003b. A minimum on the mean number of steps taken in adaptive walks. J. Theor. Biol. 220:241-247.
-
(2003)
J. Theor. Biol.
, vol.220
, pp. 241-247
-
-
Orr, H.A.1
-
48
-
-
33748537738
-
The population genetics of adaptation on correlated fitness landscapes: the block model
-
Orr, H. A. 2006. The population genetics of adaptation on correlated fitness landscapes: the block model. Evolution 60:1113.
-
(2006)
Evolution
, vol.60
, pp. 1113
-
-
Orr, H.A.1
-
49
-
-
0028785881
-
Protein evolution on partially correlated landscapes
-
Perelson, A. S., and C. A. Macken 1995. Protein evolution on partially correlated landscapes. Proc. Natl. Acad. Sci. USA 92:9657-9661.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 9657-9661
-
-
Perelson, A.S.1
Macken, C.A.2
-
50
-
-
33846551980
-
Empirical fitness landscapes reveal accessible paths
-
Poelwijk, F., D. Kivet, D. Weinreich, and S. Tans 2007. Empirical fitness landscapes reveal accessible paths. Nature 445:383.
-
(2007)
Nature
, vol.445
, pp. 383
-
-
Poelwijk, F.1
Kivet, D.2
Weinreich, D.3
Tans, S.4
-
52
-
-
33749051432
-
Properties of adaptive walks on uncorrelated landscapes under strong selection and weak mutation
-
Rokyta, D., C. J. Beisel, and P. Joyce 2006. Properties of adaptive walks on uncorrelated landscapes under strong selection and weak mutation. J. Theor. Biol. 243:114-120.
-
(2006)
J. Theor. Biol.
, vol.243
, pp. 114-120
-
-
Rokyta, D.1
Beisel, C.J.2
Joyce, P.3
-
53
-
-
16844369125
-
An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus
-
Rokyta, D., P. Joyce, S. Caudle, and H. Wichman 2005. An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus. Nat. Genet. 37:441-444.
-
(2005)
Nat. Genet.
, vol.37
, pp. 441-444
-
-
Rokyta, D.1
Joyce, P.2
Caudle, S.3
Wichman, H.4
-
54
-
-
70449533747
-
The genetics of adaptation for eight microvirid bacteriophages
-
Rokyta, D. R., Z. Abdo, and H. A. Wichman 2009. The genetics of adaptation for eight microvirid bacteriophages. J. Mol. Evol. 69:229.
-
(2009)
J. Mol. Evol.
, vol.69
, pp. 229
-
-
Rokyta, D.R.1
Abdo, Z.2
Wichman, H.A.3
-
55
-
-
81255183960
-
Beneficial fitness effects are not exponential for two viruses
-
Rokyta, D. R., C. J. Beisel, P. Joyce, M. T. Ferris, C. L. Burch, and H. A. Wichman 2008. Beneficial fitness effects are not exponential for two viruses. J. Mol. Evol. 69:229.
-
(2008)
J. Mol. Evol.
, vol.69
, pp. 229
-
-
Rokyta, D.R.1
Beisel, C.J.2
Joyce, P.3
Ferris, M.T.4
Burch, C.L.5
Wichman, H.A.6
-
56
-
-
2942565781
-
The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus
-
Sanjuán, R., A. Moya, and S. Elena 2004. The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus. Proc. Natl. Acad. Sci. USA 101:8396-8401.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 8396-8401
-
-
Sanjuán, R.1
Moya, A.2
Elena, S.3
-
58
-
-
72949085559
-
The properties of adaptive walks in evolving populations of fungus
-
Schoustra, S., T. Bataillon, D. Gifford, and R. Kassen 2009. The properties of adaptive walks in evolving populations of fungus. PLoS Biol. 7: e1000250.
-
(2009)
PLoS Biol
, vol.7
-
-
Schoustra, S.1
Bataillon, T.2
Gifford, D.3
Kassen, R.4
-
60
-
-
84898059183
-
-
Adaptive walks and distribution of beneficial fitness effects. Available at arXiv:1301.1439v1.
-
Seetharaman, S., and K. Jain 2013. Adaptive walks and distribution of beneficial fitness effects. Available at arXiv:1301.1439v1.
-
(2013)
-
-
Seetharaman, S.1
Jain, K.2
-
61
-
-
84858212487
-
The dynamics of HIV-1 adaptation in early infection
-
da Silva, J. 2012. The dynamics of HIV-1 adaptation in early infection. Genetics 190:1087-1099.
-
(2012)
Genetics
, vol.190
, pp. 1087-1099
-
-
da Silva, J.1
-
63
-
-
84862840054
-
Cost of antibiotic resistance and the geometry of adaptation
-
Sousa, A., S. Magalhaes, and I. Gordo 2012. Cost of antibiotic resistance and the geometry of adaptation. Mol. Biol. Evol. 29:1417-1428.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1417-1428
-
-
Sousa, A.1
Magalhaes, S.2
Gordo, I.3
-
64
-
-
84874460493
-
Quantitative analyses of empirical fitness landscapes
-
Szendro, I. G., M. F. Schenk, J. Franke, J. Krug, and J. A. G. M. de Visser 2013. Quantitative analyses of empirical fitness landscapes. J. Stat. Mech. :P01005.
-
(2013)
J. Stat. Mech.
-
-
Szendro, I.G.1
Schenk, M.F.2
Franke, J.3
Krug, J.4
de Visser, J.A.G.M.5
-
65
-
-
21044446722
-
Rapid evolutionary escape by large populations from local fitness peaks is likely in nature
-
Weinreich, D. M., and L. Chao 2005. Rapid evolutionary escape by large populations from local fitness peaks is likely in nature. Evolution 59:1175-1182.
-
(2005)
Evolution
, vol.59
, pp. 1175-1182
-
-
Weinreich, D.M.1
Chao, L.2
|