-
1
-
-
0001108223
-
Biological evolution through mutation, selection, and drift: An introductory review
-
edited by D. STAUFFER. World Scientific, Singapore
-
BAAKE, E., and W. GABRIEL, 2000 Biological evolution through mutation, selection, and drift: an introductory review, pp. 203-264 in Annual Reviews of Computational Physics VII, edited by D. STAUFFER. World Scientific, Singapore.
-
(2000)
Annual Reviews of Computational Physics
, vol.7
, pp. 203-264
-
-
BAAKE, E.1
GABRIEL, W.2
-
2
-
-
0033055004
-
Evolution by small steps and rugged landscapes in the RNA virus Φ6
-
BURCH, C. L., and L. CHAO, 1999 Evolution by small steps and rugged landscapes in the RNA virus Φ6. Genetics 151: 921-927.
-
(1999)
Genetics
, vol.151
, pp. 921-927
-
-
BURCH, C.L.1
CHAO, L.2
-
3
-
-
0034632830
-
Evolvability of an RNA virus is determined by its mutational neighbourhood
-
BURCH, C. L., and L. CHAO, 2000 Evolvability of an RNA virus is determined by its mutational neighbourhood. Nature 406: 625-628.
-
(2000)
Nature
, vol.406
, pp. 625-628
-
-
BURCH, C.L.1
CHAO, L.2
-
4
-
-
0037035388
-
Evolution of functionally conserved enhancers can be accelerated in large populations: A population-genetic model
-
CARTER, A. J. R., and G. P. WAGNER, 2002 Evolution of functionally conserved enhancers can be accelerated in large populations: a population-genetic model. Proc. R. Soc. Lond. Ser. B Biol. Sci. 269: 953-960.
-
(2002)
Proc. R. Soc. Lond. Ser. B Biol. Sci
, vol.269
, pp. 953-960
-
-
CARTER, A.J.R.1
WAGNER, G.P.2
-
6
-
-
27244462284
-
Evolution in a flat fitness landscape
-
DERRIDA, B., and L. PELITI, 1991 Evolution in a flat fitness landscape Bull. Math. Biol. 53: 355-382.
-
(1991)
Bull. Math. Biol
, vol.53
, pp. 355-382
-
-
DERRIDA, B.1
PELITI, L.2
-
8
-
-
0015133749
-
Self organization of matter and evolution of biological macromolecules
-
EIGEN, M., 1971 Self organization of matter and evolution of biological macromolecules. Naturwissenchaften 58: 465-523.
-
(1971)
Naturwissenchaften
, vol.58
, pp. 465-523
-
-
EIGEN, M.1
-
10
-
-
0038441327
-
Evolution experiments with microorganisms: The dynamics and genetic bases of adaptation
-
ELENA, S. F., and R. E. LENSKI, 2003 Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat. Rev. Genet. 4: 457-469.
-
(2003)
Nat. Rev. Genet
, vol.4
, pp. 457-469
-
-
ELENA, S.F.1
LENSKI, R.E.2
-
11
-
-
0642349134
-
Climb every mountain?
-
ELENA, S. F., and R. SANJUAN, 2003 Climb every mountain? Science 302: 2074-2075.
-
(2003)
Science
, vol.302
, pp. 2074-2075
-
-
ELENA, S.F.1
SANJUAN, R.2
-
12
-
-
0000017979
-
Evolution in a rugged fitness landscape
-
FLYVBJERG, H., and B. LAUTRUP, 1992 Evolution in a rugged fitness landscape. Phys. Rev. A 46: 6714-6723.
-
(1992)
Phys. Rev. A
, vol.46
, pp. 6714-6723
-
-
FLYVBJERG, H.1
LAUTRUP, B.2
-
14
-
-
2542583245
-
The fate of competing beneficial mutations in an asexual population
-
GERRISH, P. J., and R. E. LENSKI, 1998 The fate of competing beneficial mutations in an asexual population. Genetica 102: 127-144.
-
(1998)
Genetica
, vol.102
, pp. 127-144
-
-
GERRISH, P.J.1
LENSKI, R.E.2
-
15
-
-
0001359641
-
Molecular evolution over the mutational landscape
-
GILLESPIE, J. H., 1984 Molecular evolution over the mutational landscape. Evolution 38: 1116-1129.
-
(1984)
Evolution
, vol.38
, pp. 1116-1129
-
-
GILLESPIE, J.H.1
-
16
-
-
84955349191
-
-
HALDANE, J. B. S., 1927 A mathematical theory of natural and artificial selection. V. Proc. Camb. Philos. Soc. 23: 838-844.
-
HALDANE, J. B. S., 1927 A mathematical theory of natural and artificial selection. V. Proc. Camb. Philos. Soc. 23: 838-844.
-
-
-
-
17
-
-
0028354361
-
Error thresholds and stationary mutant distributions inmulti-locus diploid geneticsmodels
-
HIGGS, P. G., 1994 Error thresholds and stationary mutant distributions inmulti-locus diploid geneticsmodels. Genet. Res. 63: 63-78.
-
(1994)
Genet. Res
, vol.63
, pp. 63-78
-
-
HIGGS, P.G.1
-
18
-
-
1942453330
-
Stochastic tunnels in evolutionary dynamics
-
IWASA, Y., F. MICHOR and M. A. NOWAK, 2004 Stochastic tunnels in evolutionary dynamics. Genetics 166: 1571-1579.
-
(2004)
Genetics
, vol.166
, pp. 1571-1579
-
-
IWASA, Y.1
MICHOR, F.2
NOWAK, M.A.3
-
19
-
-
34249014356
-
-
JAIN, K., and J. KRUG, 2005 Evolutionary trajectories in rugged fitness landscapes. J. Stat. Mech. Theor. Exp., P04008.
-
JAIN, K., and J. KRUG, 2005 Evolutionary trajectories in rugged fitness landscapes. J. Stat. Mech. Theor. Exp., P04008.
-
-
-
-
20
-
-
34848838094
-
Adaptation in simple and complex fitness landscapes
-
edited by U. BASTOLLA, M. PORTO, H. ROMAN and M. VENDRUSCOLO. Springer, Berlin in press
-
JAIN, K., and J. KRUG, 2007 Adaptation in simple and complex fitness landscapes, in Structural Approaches to Sequence Evolution: Molecules, Networks and Populations, edited by U. BASTOLLA, M. PORTO, H. ROMAN and M. VENDRUSCOLO. Springer, Berlin (in press).
-
(2007)
Structural Approaches to Sequence Evolution: Molecules, Networks and Populations
-
-
JAIN, K.1
KRUG, J.2
-
21
-
-
0028934840
-
Theoretical analysis of divergence in mean fitness between initially identical populations
-
JOHNSON, P. A., R. E. LENSKI and F. C. HOPPENSTEADT, 1995 Theoretical analysis of divergence in mean fitness between initially identical populations. Proc. R. Soc. Lond. Ser. B 259: 125-130.
-
(1995)
Proc. R. Soc. Lond. Ser. B
, vol.259
, pp. 125-130
-
-
JOHNSON, P.A.1
LENSKI, R.E.2
HOPPENSTEADT, F.C.3
-
23
-
-
0023647382
-
Towards a general theory of adaptive walks on rugged landscapes
-
KAUFFMAN, S. A., and S. LEVIN, 1987 Towards a general theory of adaptive walks on rugged landscapes. J. Theor. Biol. 128: 11-45.
-
(1987)
J. Theor. Biol
, vol.128
, pp. 11-45
-
-
KAUFFMAN, S.A.1
LEVIN, S.2
-
24
-
-
0028598147
-
Evidence for multiple adaptive peaks from populations of bacteria evolving in a structured habitat
-
KORONA, R., C. H. NAKATSU, L. J. FORNEY and R. E. LENSKI, 1994 Evidence for multiple adaptive peaks from populations of bacteria evolving in a structured habitat. Proc. Natl. Acad. Sci. USA 91: 9037-9041.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 9037-9041
-
-
KORONA, R.1
NAKATSU, C.H.2
FORNEY, L.J.3
LENSKI, R.E.4
-
25
-
-
0001125590
-
Directed polymers in the presence of columnar disorder
-
KRUG, J., and T. HALPIN-HEALY, 1993 Directed polymers in the presence of columnar disorder. J. Phys. I 3: 2179-2198.
-
(1993)
J. Phys. I
, vol.3
, pp. 2179-2198
-
-
KRUG, J.1
HALPIN-HEALY, T.2
-
26
-
-
25844507771
-
Breaking records in the evolutionary race
-
KRUG, J., and K. JAIN, 2005 Breaking records in the evolutionary race. Physica A 358: 1-9.
-
(2005)
Physica A
, vol.358
, pp. 1-9
-
-
KRUG, J.1
JAIN, K.2
-
27
-
-
0037304024
-
Punctuated evolution for the quasispecies model
-
KRUG, J., and C. KARL, 2003 Punctuated evolution for the quasispecies model. Physica A 318: 137-143.
-
(2003)
Physica A
, vol.318
, pp. 137-143
-
-
KRUG, J.1
KARL, C.2
-
28
-
-
34249113170
-
Genetic variability in RNA viruses: Consequences in epidemiology and in the development of new strategies for the extinction of infectivity
-
edited by U. BASTOLLA, M. PORTO, H. ROMAN and M. VENDRUSCOLO. Springer, Berlin in press
-
LÁZARO, E., 2007 Genetic variability in RNA viruses: consequences in epidemiology and in the development of new strategies for the extinction of infectivity, in Structural Approaches to Sequence Evolution: Molecules, Networks and Populations, edited by U. BASTOLLA, M. PORTO, H. ROMAN and M. VENDRUSCOLO. Springer, Berlin (in press).
-
(2007)
Structural Approaches to Sequence Evolution: Molecules, Networks and Populations
-
-
LÁZARO, E.1
-
29
-
-
0028365256
-
Dynamics of adaptation and diversification-a 10,000 generation experiment with bacterial populations
-
LENSKI, R. E., and M. TRAVISANO, 1994 Dynamics of adaptation and diversification-a 10,000 generation experiment with bacterial populations. Proc. Natl. Acad. Sci. USA 91: 6808-6814.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 6808-6814
-
-
LENSKI, R.E.1
TRAVISANO, M.2
-
30
-
-
27144538817
-
The biochemical architecture of an ancient adaptive landscape
-
LUNZER, M., S. P. MILLER, R. FELSHEIM and A. M. DEAN, 2005 The biochemical architecture of an ancient adaptive landscape. Science 310: 499-501.
-
(2005)
Science
, vol.310
, pp. 499-501
-
-
LUNZER, M.1
MILLER, S.P.2
FELSHEIM, R.3
DEAN, A.M.4
-
33
-
-
3242672209
-
Evolutionary dynamics of tumor suppressor gene inactivation
-
NOWAK, M. A., F. MICHOR, N. L. KOMAROVA and I. IWASA, 2004 Evolutionary dynamics of tumor suppressor gene inactivation. Proc. Natl. Acad. Sci. USA 101: 10635-10638.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 10635-10638
-
-
NOWAK, M.A.1
MICHOR, F.2
KOMAROVA, N.L.3
IWASA, I.4
-
34
-
-
0036340979
-
The population genetics of adaptation: The adaptation of DNA sequences
-
ORR, H. A., 2002 The population genetics of adaptation: the adaptation of DNA sequences. Evolution 56: 1317-1330.
-
(2002)
Evolution
, vol.56
, pp. 1317-1330
-
-
ORR, H.A.1
-
35
-
-
0032824180
-
Linkage disequilibrium test implies a large effective population number for HIV in vivo
-
ROUZINE, I. M., and J. M. COFFIN, 1999 Linkage disequilibrium test implies a large effective population number for HIV in vivo. Proc. Natl. Acad. Sci. USA 96: 10758-10763.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 10758-10763
-
-
ROUZINE, I.M.1
COFFIN, J.M.2
-
36
-
-
0035102156
-
Transition between stochastic evolution and deterministic evolution in the presence of selection: General theory and application to virology
-
ROUZINE, I. M., A. RODRIGO and J. M. COFFIN, 2001 Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology. Microbiol. Mol. Biol. Rev. 65: 151-185.
-
(2001)
Microbiol. Mol. Biol. Rev
, vol.65
, pp. 151-185
-
-
ROUZINE, I.M.1
RODRIGO, A.2
COFFIN, J.M.3
-
37
-
-
34548864999
-
-
SIRE, C., S. MAJUMDAR and D. S. DEAN, 2006 Exact solution of a model of time-dependent evolutionary dynamics in a rugged fitness landscape. J. Stat. Mech., L07001.
-
SIRE, C., S. MAJUMDAR and D. S. DEAN, 2006 Exact solution of a model of time-dependent evolutionary dynamics in a rugged fitness landscape. J. Stat. Mech., L07001.
-
-
-
-
39
-
-
0033826584
-
Metastable evolutionary dynamics: Crossing fitness barriers or escaping via neutral paths?
-
VAN NIMWEGEN, E., and J. P. CRUTCHFIELD, 2000 Metastable evolutionary dynamics: Crossing fitness barriers or escaping via neutral paths? Bull. Math. Biol. 62: 799-848.
-
(2000)
Bull. Math. Biol
, vol.62
, pp. 799-848
-
-
VAN NIMWEGEN, E.1
CRUTCHFIELD, J.P.2
-
40
-
-
0033756453
-
Models of experimental evolution: The role of genetic chance and selective necessity
-
WAHL, L. M., and D. C. KRAKAUER, 2000 Models of experimental evolution: the role of genetic chance and selective necessity. Genetics 156: 1437-1448.
-
(2000)
Genetics
, vol.156
, pp. 1437-1448
-
-
WAHL, L.M.1
KRAKAUER, D.C.2
-
41
-
-
21044446722
-
Rapid evolutionary escape by large populations from local fitness peaks is likely in nature
-
WEINREICH, D. M., and L. CHAO, 2005 Rapid evolutionary escape by large populations from local fitness peaks is likely in nature. Evolution 59: 1175-1182.
-
(2005)
Evolution
, vol.59
, pp. 1175-1182
-
-
WEINREICH, D.M.1
CHAO, L.2
-
42
-
-
21044435697
-
Sign epistasis and genetic constraint on evolutionary trajectories
-
WEINREICH, D. M., R. A. WATSON and L. CHAO, 2005 Sign epistasis and genetic constraint on evolutionary trajectories. Evolution 59: 1165-1174.
-
(2005)
Evolution
, vol.59
, pp. 1165-1174
-
-
WEINREICH, D.M.1
WATSON, R.A.2
CHAO, L.3
-
43
-
-
33645666942
-
Darwinian evolution can follow only very few mutational paths to fitter proteins
-
WEINREICH, D. M., N. F. DELANEY, M. A. DEPRISTO and D. L. HARTL, 2006 Darwinian evolution can follow only very few mutational paths to fitter proteins. Science 312: 111-114.
-
(2006)
Science
, vol.312
, pp. 111-114
-
-
WEINREICH, D.M.1
DELANEY, N.F.2
DEPRISTO, M.A.3
HARTL, D.L.4
-
44
-
-
0028996002
-
Multiple fitness peaks and epistasis
-
WHITLOCK, M. C., P. C. PHILLIPS, F. B.-G. MOORE and S. J. TONSOR, 1995 Multiple fitness peaks and epistasis. Annu. Rev. Ecol. Syst. 26: 601-629.
-
(1995)
Annu. Rev. Ecol. Syst
, vol.26
, pp. 601-629
-
-
WHITLOCK, M.C.1
PHILLIPS, P.C.2
MOORE, F.B.-G.3
TONSOR, S.J.4
-
45
-
-
4644276948
-
The speed of adaptation in large asexual populations
-
WILKE, C. O., 2004 The speed of adaptation in large asexual populations. Genetics 167: 2045-2053.
-
(2004)
Genetics
, vol.167
, pp. 2045-2053
-
-
WILKE, C.O.1
-
46
-
-
24944485118
-
Quasispecies theory in the context of population genetics
-
WILKE, C. O., 2005 Quasispecies theory in the context of population genetics. BMC Evol. Biol. 5: 44.
-
(2005)
BMC Evol. Biol
, vol.5
, pp. 44
-
-
WILKE, C.O.1
-
47
-
-
0000907353
-
The roles of mutation, inbreeding, crossbreeding and selection in evolution
-
edited by D. F. JONES. Brooklyn Botanic Garden, Menasha, WI
-
WRIGHT, S., 1932 The roles of mutation, inbreeding, crossbreeding and selection in evolution, pp. 356-366 in Proceedings of the Sixth International Congress of Genetics, edited by D. F. JONES. Brooklyn Botanic Garden, Menasha, WI.
-
(1932)
Proceedings of the Sixth International Congress of Genetics
, pp. 356-366
-
-
WRIGHT, S.1
-
48
-
-
0037180782
-
Macroevolution simulated with autonomously replicating computer programs
-
YEDID, G., and G. BELL, 2002 Macroevolution simulated with autonomously replicating computer programs. Nature 420: 810-812.
-
(2002)
Nature
, vol.420
, pp. 810-812
-
-
YEDID, G.1
BELL, G.2
-
49
-
-
0040252217
-
Quasispecies evolution of finite populations
-
ZHANG, Y.-C., 1997 Quasispecies evolution of finite populations. Phys. Rev. E 55: R3817-R3819.
-
(1997)
Phys. Rev. E
, vol.55
-
-
ZHANG, Y.-C.1
|