-
1
-
-
0016355478
-
A new look at the statistical model identification. IEEE T
-
Akaike, H. 1974. A new look at the statistical model identification. IEEE T. Automat. Contr. 19:716-723.
-
(1974)
Automat. Contr.
, vol.19
, pp. 716-723
-
-
Akaike, H.1
-
2
-
-
33748693294
-
The biological cost of mutational antibiotic resistance: any practical conclusions?
-
Andersson, D. 2006. The biological cost of mutational antibiotic resistance: any practical conclusions? Curr. Opin. Microbiol. 9:461-465.
-
(2006)
Curr. Opin. Microbiol.
, vol.9
, pp. 461-465
-
-
Andersson, D.1
-
3
-
-
0032870940
-
The biological cost of antibiotic resistance
-
Andersson, D., and B. Levin 1999. The biological cost of antibiotic resistance. Curr. Opin. Microbiol. 2:489-493.
-
(1999)
Curr. Opin. Microbiol.
, vol.2
, pp. 489-493
-
-
Andersson, D.1
Levin, B.2
-
4
-
-
33845734583
-
The distribution of beneficial mutant effects under strong selection
-
Barrett, R. D. H., L. K. M'Gonigle, and S. P. Otto 2006. The distribution of beneficial mutant effects under strong selection. Genetics 174:2071-2079.
-
(2006)
Genetics
, vol.174
, pp. 2071-2079
-
-
Barrett, R.D.H.1
M'Gonigle, L.K.2
Otto, S.P.3
-
5
-
-
64049094567
-
Genomewide patterns of substitution in adaptively evolving populations of the RNA bacteriophage MS2
-
Betancourt, A. J. 2009. Genomewide patterns of substitution in adaptively evolving populations of the RNA bacteriophage MS2. Genetics 181:1535-1544.
-
(2009)
Genetics
, vol.181
, pp. 1535-1544
-
-
Betancourt, A.J.1
-
6
-
-
78650005340
-
Lack of evidence for sign epistasis between beneficial mutations in an RNA bacteriophage
-
Betancourt, A. J. 2010. Lack of evidence for sign epistasis between beneficial mutations in an RNA bacteriophage. J. Mol. Evol. 71:437-443.
-
(2010)
J. Mol. Evol.
, vol.71
, pp. 437-443
-
-
Betancourt, A.J.1
-
7
-
-
61549106268
-
Parallel genetic evolution within and between bacteriophage species of varying degrees of divergence
-
Bollback, J., and J. Huelsenbeck 2009. Parallel genetic evolution within and between bacteriophage species of varying degrees of divergence. Genetics 181:225-234.
-
(2009)
Genetics
, vol.181
, pp. 225-234
-
-
Bollback, J.1
Huelsenbeck, J.2
-
8
-
-
80054923724
-
-
On the evolution of pesticide resistance in Phytophthora infestans: an experimental evolution approach (Ph.D. Thesis). Wageningen University, Wageningen, NL
-
Bosmans, S. 2009. On the evolution of pesticide resistance in Phytophthora infestans: an experimental evolution approach (Ph.D. Thesis). Wageningen University, Wageningen, NL
-
(2009)
-
-
Bosmans, S.1
-
9
-
-
0034035485
-
Big-benefit mutations in a bacteriophage inhibited with heat
-
Bull, J., M. Badgett, and H. Wichman, 2000. Big-benefit mutations in a bacteriophage inhibited with heat. Mol. Biol. Evol. 17:942-950.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 942-950
-
-
Bull, J.1
Badgett, M.2
Wichman, H.3
-
10
-
-
0033055004
-
Evolution by small steps and rugged landscapes in the RNA virus Φ6
-
Burch, C. L. and L. Chao 1999. Evolution by small steps and rugged landscapes in the RNA virus Φ6. Genetics 151:921-927.
-
(1999)
Genetics
, vol.151
, pp. 921-927
-
-
Burch, C.L.1
Chao, L.2
-
11
-
-
34250756711
-
Adaptive walks toward a moving optimum
-
Collins, S., J. de Meaux, and C. Acquisti 2007. Adaptive walks toward a moving optimum. Genetics 176:1089-1099.
-
(2007)
Genetics
, vol.176
, pp. 1089-1099
-
-
Collins, S.1
de Meaux, J.2
Acquisti, C.3
-
12
-
-
0038441327
-
Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation
-
Elena, S., and R. Lenski 2003. Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat. Rev. Genet. 4:457-469.
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 457-469
-
-
Elena, S.1
Lenski, R.2
-
14
-
-
0020740521
-
A simple stochastic gene substitution model
-
Gillespie, J. H. 1983. A simple stochastic gene substitution model. Theor. Popul. Biol. 23:202-215.
-
(1983)
Theor. Popul. Biol.
, vol.23
, pp. 202-215
-
-
Gillespie, J.H.1
-
15
-
-
0001359641
-
Molecular evolution over the mutational landscape
-
Gillespie, J. H.. 1984. Molecular evolution over the mutational landscape. Evolution 38:1116-1129.
-
(1984)
Evolution
, vol.38
, pp. 1116-1129
-
-
Gillespie, J.H.1
-
17
-
-
33645076253
-
An equivalence principle for the incorporation of favorable mutations in asexual populations
-
Hegreness, M., N. Shoresh, D. Hartl, and R. Kishony 2006. An equivalence principle for the incorporation of favorable mutations in asexual populations. Science 311:1615-1617.
-
(2006)
Science
, vol.311
, pp. 1615-1617
-
-
Hegreness, M.1
Shoresh, N.2
Hartl, D.3
Kishony, R.4
-
18
-
-
0028182772
-
Luria-Delbrück fluctuation experiments: design and analysis
-
Jones, M. E., S. M. Thomas, and A. Rogers 1994. Luria-Delbrück fluctuation experiments: design and analysis. Genetics 136:1209-1216.
-
(1994)
Genetics
, vol.136
, pp. 1209-1216
-
-
Jones, M.E.1
Thomas, S.M.2
Rogers, A.3
-
19
-
-
33645394597
-
Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria
-
Kassen, R., and T. Bataillon 2006. Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria. Nat. Genet. 38:484-488.
-
(2006)
Nat. Genet.
, vol.38
, pp. 484-488
-
-
Kassen, R.1
Bataillon, T.2
-
20
-
-
0023647382
-
Towards a general theory of adaptive walks on rugged landscapes
-
Kauffman, S., and S. Levin 1987. Towards a general theory of adaptive walks on rugged landscapes. J. Theor. Biol. 128:11-45.
-
(1987)
J. Theor. Biol.
, vol.128
, pp. 11-45
-
-
Kauffman, S.1
Levin, S.2
-
21
-
-
0035695235
-
Profiles of adaptation in two similar viruses
-
Kichler Holder, K., and J. J. Bull 2001. Profiles of adaptation in two similar viruses. Genetics 159:1393-1401.
-
(2001)
Genetics
, vol.159
, pp. 1393-1401
-
-
Kichler Holder, K.1
Bull, J.J.2
-
22
-
-
33645986456
-
Host species barriers to influenza virus infections
-
Kuiken, T., E. C. Holmes, J. McCauley, G. F. Rimmelzwaan, C. S. Williams, and B. T. Grenfell 2006. Host species barriers to influenza virus infections. Science 312:394-397.
-
(2006)
Science
, vol.312
, pp. 394-397
-
-
Kuiken, T.1
Holmes, E.C.2
McCauley, J.3
Rimmelzwaan, G.F.4
Williams, C.S.5
Grenfell, B.T.6
-
23
-
-
0026279651
-
Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations
-
Lenski, R. E., M. R. Rose, S. C. Simpson, and S. C. Tadler 1991. Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2, 000 generations. Am. Nat. 138:1315-1341.
-
(1991)
Am. Nat.
, vol.138
, pp. 1315-1341
-
-
Lenski, R.E.1
Rose, M.R.2
Simpson, S.C.3
Tadler, S.C.4
-
24
-
-
27144538817
-
The biochemical architecture of an ancient adaptive landscape
-
Lunzer, M., S. P. Miller, R. Felsheim, and A. M. Dean 2005. The biochemical architecture of an ancient adaptive landscape. Science 310:499-501.
-
(2005)
Science
, vol.310
, pp. 499-501
-
-
Lunzer, M.1
Miller, S.P.2
Felsheim, R.3
Dean, A.M.4
-
25
-
-
78449233935
-
Pervasive cryptic epistasis in molecular evolution
-
Lunzer, M., G. B. Golding, and A. M. Dean 2010. Pervasive cryptic epistasis in molecular evolution. PLoS Genet. 6:e1001162.
-
(2010)
PLoS Genet.
, vol.6
-
-
Lunzer, M.1
Golding, G.B.2
Dean, A.M.3
-
26
-
-
0001641514
-
Mutations of bacteria from virus sensitivity to virus resistance
-
Luria, S. E., and M. Delbrück 1943. Mutations of bacteria from virus sensitivity to virus resistance. Genetics 28:491-511.
-
(1943)
Genetics
, vol.28
, pp. 491-511
-
-
Luria, S.E.1
Delbrück, M.2
-
27
-
-
79251553136
-
Diminishing returns from beneficial mutations and pervasive epistasis shape the fitness landscape for rifampicin resistance in Pseudomonas aeruginosa
-
MacLean, R., G. Perron, and A. Gardner 2010. Diminishing returns from beneficial mutations and pervasive epistasis shape the fitness landscape for rifampicin resistance in Pseudomonas aeruginosa. Genetics 186:1345-1354.
-
(2010)
Genetics
, vol.186
, pp. 1345-1354
-
-
MacLean, R.1
Perron, G.2
Gardner, A.3
-
28
-
-
49849084622
-
The distribution of beneficial and fixed mutation fitness effects close to an optimum
-
Martin, G., and T. Lenormand 2008. The distribution of beneficial and fixed mutation fitness effects close to an optimum. Genetics 179:907-916.
-
(2008)
Genetics
, vol.179
, pp. 907-916
-
-
Martin, G.1
Lenormand, T.2
-
29
-
-
0036340979
-
The population genetics of adaptation: the adaptation of DNA sequences
-
Orr, H. A. 2002. The population genetics of adaptation: the adaptation of DNA sequences. Evolution 56:1317-1330.
-
(2002)
Evolution
, vol.56
, pp. 1317-1330
-
-
Orr, H.A.1
-
30
-
-
0037219370
-
A minimum on the mean number of steps taken in adaptive walks
-
Orr, H. A.. 2003. A minimum on the mean number of steps taken in adaptive walks. J. Theor. Biol. 220:241-247.
-
(2003)
J. Theor. Biol.
, vol.220
, pp. 241-247
-
-
Orr, H.A.1
-
31
-
-
13144257707
-
The genetic theory of adaptation: a brief history
-
Orr, H. A.. 2005a. The genetic theory of adaptation: a brief history. Nat. Rev. Genet. 6:119-127.
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 119-127
-
-
Orr, H.A.1
-
32
-
-
16344391209
-
Theories of adaptation: what they do and don't say
-
Orr, H. A.. 2005b. Theories of adaptation: what they do and don't say. Genetica 123:3-13.
-
(2005)
Genetica
, vol.123
, pp. 3-13
-
-
Orr, H.A.1
-
33
-
-
29244453214
-
The distribution of fitness effects among beneficial mutations in Fisher's geometric model of adaptation
-
Orr, H. A.. 2006. The distribution of fitness effects among beneficial mutations in Fisher's geometric model of adaptation. J. Theor. Biol. 238:279-285.
-
(2006)
J. Theor. Biol.
, vol.238
, pp. 279-285
-
-
Orr, H.A.1
-
34
-
-
0020640576
-
Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populations
-
Paquin, C., and J. Adams, 1983. Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populations. Nature 302:495-500.
-
(1983)
Nature
, vol.302
, pp. 495-500
-
-
Paquin, C.1
Adams, J.2
-
35
-
-
51949109019
-
Cross-species virus transmission and the emergence of new epidemic diseases
-
Parrish, C. R., E. C. Holmes, D. M. Morens, E.-C. Park, D. S. Burke, C. H. Calisher, C. A. Laughlin, L. J. Saif, and P. Daszak 2008. Cross-species virus transmission and the emergence of new epidemic diseases. Microbiol Mol. Biol. Rev. 72:457-470.
-
(2008)
Microbiol Mol. Biol. Rev.
, vol.72
, pp. 457-470
-
-
Parrish, C.R.1
Holmes, E.C.2
Morens, D.M.3
Park, E.-C.4
Burke, D.S.5
Calisher, C.H.6
Laughlin, C.A.7
Saif, L.J.8
Daszak, P.9
-
36
-
-
34547924819
-
Adaptive mutations in bacteria: high rate and small effects
-
Perfeito, L., L. Fernandes, C. Mota, and I. Gordo 2007. Adaptive mutations in bacteria: high rate and small effects. Science 317:813-815.
-
(2007)
Science
, vol.317
, pp. 813-815
-
-
Perfeito, L.1
Fernandes, L.2
Mota, C.3
Gordo, I.4
-
37
-
-
0036789812
-
The fitness of filamentous fungi
-
Pringle, A., and J. W. Taylor 2002. The fitness of filamentous fungi. Trends Microbiol. 10:474-481.
-
(2002)
Trends Microbiol.
, vol.10
, pp. 474-481
-
-
Pringle, A.1
Taylor, J.W.2
-
38
-
-
79951480123
-
-
R Development Core Team. R Foundation for Statistical Computing, Vienna, Austria ISBN 3-900051-07-0.
-
R Development Core Team. 2010. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria ISBN 3-900051-07-0.
-
(2010)
R: a language and environment for statistical computing
-
-
-
39
-
-
70449533747
-
The genetics of adaptation for eight microvirid bacteriophages
-
Rokyta, D. R., Z. Abdo, and H. A. Wichman 2009. The genetics of adaptation for eight microvirid bacteriophages. J. Mol. Evol. 69:229-239.
-
(2009)
J. Mol. Evol.
, vol.69
, pp. 229-239
-
-
Rokyta, D.R.1
Abdo, Z.2
Wichman, H.A.3
-
40
-
-
54349092997
-
Beneficial fitness effects are not exponential for two viruses
-
Rokyta, D. R., C. J. Beisel, P. Joyce, M. T. Ferris, C. L. Burch, and H. A. Wichman 2008. Beneficial fitness effects are not exponential for two viruses. J. Mol. Evol. 67:368-376.
-
(2008)
J. Mol. Evol.
, vol.67
, pp. 368-376
-
-
Rokyta, D.R.1
Beisel, C.J.2
Joyce, P.3
Ferris, M.T.4
Burch, C.L.5
Wichman, H.A.6
-
41
-
-
0034104460
-
Long-term experimental evolution in Escherichia coli. viii. Dynamics of a balanced polymorphism
-
Rozen, D., and R. Lenski 2000. Long-term experimental evolution in Escherichia coli. viii. Dynamics of a balanced polymorphism. Am. Nat. 155:24-35.
-
(2000)
Am. Nat.
, vol.155
, pp. 24-35
-
-
Rozen, D.1
Lenski, R.2
-
42
-
-
0037172667
-
Fitness effects of fixed beneficial mutations in microbial populations
-
Rozen, D. E., J. A. G. M. de Visser, and P. J. Gerrish 2002. Fitness effects of fixed beneficial mutations in microbial populations. Curr. Biol. 12:1040-1045.
-
(2002)
Curr. Biol.
, vol.12
, pp. 1040-1045
-
-
Rozen, D.E.1
de Visser, J.A.G.M.2
Gerrish, P.J.3
-
43
-
-
79953738501
-
Initial mutations direct alternative pathways of protein evolution
-
Salverda, M. L. M., E. Dellus, F. A. Gorter, A. J. M. Debets, J. van der Oost, R. F. Hoekstra, D. S. Tawfik, J. A. G. M. de Visser 2011. Initial mutations direct alternative pathways of protein evolution. PLoS Genet. 7:e1001321.
-
(2011)
PLoS Genet.
, vol.7
-
-
Salverda, M.L.M.1
Dellus, E.2
Gorter, F.A.3
Debets, A.J.M.4
van der Oost, J.5
Hoekstra, R.F.6
Tawfik, D.S.7
de Visser, J.A.G.M.8
-
44
-
-
2942565781
-
The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus
-
Sanjuán, R., A. Moya, and S. F. Elena 2004. The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus. Proc. Natl. Acad. Sci. USA 101:8396-8401.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 8396-8401
-
-
Sanjuán, R.1
Moya, A.2
Elena, S.F.3
-
45
-
-
77955486459
-
Fitness-associated sexual reproduction in a filamentous fungus
-
Schoustra, S., H. D. Rundle, R. Dali, and R. Kassen 2010. Fitness-associated sexual reproduction in a filamentous fungus. Curr. Biol. 20:1350-1355.
-
(2010)
Curr. Biol.
, vol.20
, pp. 1350-1355
-
-
Schoustra, S.1
Rundle, H.D.2
Dali, R.3
Kassen, R.4
-
47
-
-
33745271368
-
Reducing the cost of resistance; experimental evolution in the filamentous fungus Aspergillus nidulans
-
Schoustra, S. E., A. J. M. Debets, M. Slakhorst, and R. F. Hoekstra 2006. Reducing the cost of resistance; experimental evolution in the filamentous fungus Aspergillus nidulans. J. Evol. Biol. 19:1115-1127.
-
(2006)
J. Evol. Biol.
, vol.19
, pp. 1115-1127
-
-
Schoustra, S.E.1
Debets, A.J.M.2
Slakhorst, M.3
Hoekstra, R.F.4
-
48
-
-
22144468425
-
Comparing artificial and natural selection in rate of adaptation to genetic stress in Aspergillus nidulans
-
Schoustra, S. E., M. Slakhorst, A. J. M. Debets, and R. F. Hoekstra 2005. Comparing artificial and natural selection in rate of adaptation to genetic stress in Aspergillus nidulans. J. Evol. Biol. 18:771-778.
-
(2005)
J. Evol. Biol.
, vol.18
, pp. 771-778
-
-
Schoustra, S.E.1
Slakhorst, M.2
Debets, A.J.M.3
Hoekstra, R.F.4
-
49
-
-
33645666942
-
Darwinian evolution can follow only very few mutational paths to fitter proteins
-
Weinreich, D. M., N. F. Delaney, M. A. DePristo, and D. L. Hartl 2006, Darwinian evolution can follow only very few mutational paths to fitter proteins. Science 312:111-114.
-
(2006)
Science
, vol.312
, pp. 111-114
-
-
Weinreich, D.M.1
Delaney, N.F.2
DePristo, M.A.3
Hartl, D.L.4
-
50
-
-
0033575348
-
Different trajectories of parallel evolution during viral adaptation
-
Wichman, H. A., M. R. Badgett, L. A. Scott, C. M. Boulianne, and J. J. Bull 1999. Different trajectories of parallel evolution during viral adaptation. Science 285:422-424.
-
(1999)
Science
, vol.285
, pp. 422-424
-
-
Wichman, H.A.1
Badgett, M.R.2
Scott, L.A.3
Boulianne, C.M.4
Bull, J.J.5
-
51
-
-
14844363079
-
The number of mutations selected during adaptation in a laboratory population of Saccharomyces cerevisiae
-
Zeyl, C. 2005. The number of mutations selected during adaptation in a laboratory population of Saccharomyces cerevisiae. Genetics 169:1825-1831.
-
(2005)
Genetics
, vol.169
, pp. 1825-1831
-
-
Zeyl, C.1
|