메뉴 건너뛰기




Volumn 9, Issue 3, 2014, Pages

Discovering the recondite secondary metabolome spectrum of salinispora species: A study of inter-species diversity

Author keywords

[No Author keywords available]

Indexed keywords

NATURAL PRODUCT; RIFAMYCIN; RIFAMYCIN W; SALINIKETAL; UNCLASSIFIED DRUG;

EID: 84898006775     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0091488     Document Type: Article
Times cited : (25)

References (44)
  • 4
    • 33751100882 scopus 로고    scopus 로고
    • Developing a new resource for drug discovery: Marine actinomycete bacteria
    • DOI 10.1038/nchembio841, PII NCHEMBIO841
    • Fenical W, Jensen PR (2006) Developing a new resource for drug discovery: marine actinomycete bacteria. Nat Chem Biol 2: 666-673. (Pubitemid 44764208)
    • (2006) Nature Chemical Biology , vol.2 , Issue.12 , pp. 666-673
    • Fenical, W.1    Jensen, P.R.2
  • 5
    • 0036795821 scopus 로고    scopus 로고
    • Widespread and persistent populations of a major new marine actinomycete taxon in ocean sediments
    • DOI 10.1128/AEM.68.10.5005-5011.2002
    • Mincer TJ, Jensen PR, Kauffman CA, Fenical W (2002) Widespread and persistent populations of a major new marine actinomycete taxon in ocean sediments. Appl Environ Microbiol 68: 5005-5011. (Pubitemid 35154811)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.10 , pp. 5005-5011
    • Mincer, T.J.1    Jensen, P.R.2    Kauffman, C.A.3    Fenical, W.4
  • 8
    • 62149103377 scopus 로고    scopus 로고
    • Discovery and development of the anticancer agent salinosporamide A (NPI-0052)
    • Fenical W, Jensen PR, Palladino MA, Lam KS, Lloyd GK, et al. (2009) Discovery and development of the anticancer agent salinosporamide A (NPI-0052). Bioorg Med Chem 17: 2175-2180.
    • (2009) Bioorg Med Chem , vol.17 , pp. 2175-2180
    • Fenical, W.1    Jensen, P.R.2    Palladino, M.A.3    Lam, K.S.4    Lloyd, G.K.5
  • 9
    • 33644964280 scopus 로고    scopus 로고
    • Discovery of a new source of rifamycin antibiotics in marine sponge actinobacteria by phylogenetic prediction
    • Kim TK, Hewavitharana AK, Shaw PN, Fuerst JA (2006) Discovery of a new source of rifamycin antibiotics in marine sponge actinobacteria by phylogenetic prediction. Appl Environ Microbiol 72: 2118-2125.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2118-2125
    • Kim, T.K.1    Hewavitharana, A.K.2    Shaw, P.N.3    Fuerst, J.A.4
  • 10
    • 84886832714 scopus 로고    scopus 로고
    • The variable hydroxamic acid siderophore metabolome of the marine actinomycete Salinispora tropica CNB-440
    • Ejje N, Soe CZ, Gu J, Codd R (2013) The variable hydroxamic acid siderophore metabolome of the marine actinomycete Salinispora tropica CNB-440. Metallomics 5(11): 1519-1528
    • (2013) Metallomics , vol.5 , Issue.11 , pp. 1519-1528
    • Ejje, N.1    Soe, C.Z.2    Gu, J.3    Codd, R.4
  • 11
    • 80052743659 scopus 로고    scopus 로고
    • Geographic distribution of secondary metabolite genes in the marine actinomycete Salinispora arenicola
    • Edlund A, Loesgen S, Fenical W, Jensen PR (2011) Geographic distribution of secondary metabolite genes in the marine actinomycete Salinispora arenicola. Appl Environ Microbiol 77: 5916-5925.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 5916-5925
    • Edlund, A.1    Loesgen, S.2    Fenical, W.3    Jensen, P.R.4
  • 12
    • 70349464475 scopus 로고    scopus 로고
    • Genomic islands link secondary metabolism to functional adaptation in marine actinobacteria
    • Penn K, Jenkins C, Nett M, Udwary DW, Gontang EA, et al. (2009) Genomic islands link secondary metabolism to functional adaptation in marine actinobacteria. ISME J 3: 1193-1203.
    • (2009) ISME J , vol.3 , pp. 1193-1203
    • Penn, K.1    Jenkins, C.2    Nett, M.3    Udwary, D.W.4    Gontang, E.A.5
  • 14
    • 82955206440 scopus 로고    scopus 로고
    • Evolution of secondary metabolite genes in three closely relatedmarine actinomycete species
    • Freel KC, Nam SJ, Fenical W, Jensen PR (2011) Evolution of secondary metabolite genes in three closely relatedmarine actinomycete species. Appl Environ Microbiol 77: 7261-7270.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 7261-7270
    • Freel, K.C.1    Nam, S.J.2    Fenical, W.3    Jensen, P.R.4
  • 15
    • 33847186292 scopus 로고    scopus 로고
    • Species-specific secondary metabolite production in marine actinomycetes of the genus Salinispora
    • Jensen PR, Williams PG, Oh D-C, Zeigler L, Fenical W (2007) Species-specific secondary metabolite production in marine actinomycetes of the genus Salinispora. Appl Environ Microbiol 73: 1146-1152.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 1146-1152
    • Jensen, P.R.1    Williams, P.G.2    Oh, D.-C.3    Zeigler, L.4    Fenical, W.5
  • 17
    • 47649104484 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotic evolution
    • Keeling PJ, Palmer JD (2008) Horizontal gene transfer in eukaryotic evolution. Nat Rev Genet 9: 605-618.
    • (2008) Nat Rev Genet , vol.9 , pp. 605-618
    • Keeling, P.J.1    Palmer, J.D.2
  • 19
    • 33645295532 scopus 로고    scopus 로고
    • Horizontal gene transfer from bacteria to rumen ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment
    • Ricard G, McEwan NR, Dutilh BE, Jouany J-P, Macheboeuf D, et al. (2006) Horizontal gene transfer from bacteria to rumen ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment. BMC Genomics 7: 22.
    • (2006) BMC Genomics , vol.7 , pp. 22
    • Ricard, G.1    McEwan, N.R.2    Dutilh, B.E.3    Jouany, J.-P.4    Macheboeuf, D.5
  • 20
    • 33745782501 scopus 로고    scopus 로고
    • Diversity of polyketide synthase genes from bacteria associated with the marine sponge Pseudoceratina clavata: Culture-dependent and culture-independent approaches
    • Kim TK, Fuerst JA (2006) Diversity of polyketide synthase genes from bacteria associated with the marine sponge Pseudoceratina clavata: culture-dependent and culture-independent approaches. Environ Microbiol 8: 1460-1470.
    • (2006) Environ Microbiol , vol.8 , pp. 1460-1470
    • Kim, T.K.1    Fuerst, J.A.2
  • 22
    • 0019848679 scopus 로고
    • New rifamycins produced by a recombinant strain of Nocardia mediterranei
    • Schupp T, Traxler P, Auden J (1981) New rifamycins produced by a recombinant strain of Nocardia mediterranei. J Antibiot 34: 965.
    • (1981) J Antibiot , vol.34 , pp. 965
    • Schupp, T.1    Traxler, P.2    Auden, J.3
  • 24
    • 0026995665 scopus 로고
    • Biotransformations of rifamycins: Process possibilities
    • DOI 10.1016/0734-9750(92)91454-M
    • Banerjee U, Saxena B, Chisti Y (1992) Biotransformations of rifamycins: process possibilities. Biotechnol Adv 10: 577-595. (Pubitemid 23616653)
    • (1992) Biotechnology Advances , vol.10 , Issue.4 , pp. 577-595
    • Banerjee, U.C.1    Saxena, B.2    Chisti, Y.3
  • 25
    • 48949091007 scopus 로고    scopus 로고
    • Efficient mining of myxobacterial metabolite profiles enabled by liquid chromatography-electrospray ionisation-time-of-flight mass spectrometry and compound-based principal component analysis
    • Krug D, Zurek G, Schneider B, Garcia R, Muller R (2008) Efficient mining of myxobacterial metabolite profiles enabled by liquid chromatography- electrospray ionisation-time-of-flight mass spectrometry and compound-based principal component analysis. Anal Chim Acta 624: 97-106.
    • (2008) Anal Chim Acta , vol.624 , pp. 97-106
    • Krug, D.1    Zurek, G.2    Schneider, B.3    Garcia, R.4    Muller, R.5
  • 26
    • 44249093491 scopus 로고    scopus 로고
    • Discovering the hidden secondary metabolome of Myxococcus xanthus: A study of intraspecific diversity
    • DOI 10.1128/AEM.02863-07
    • Krug D, Zurek G, Revermann O, Vos M, Velicer GJ, et al. (2008) Discovering the hidden secondary metabolome of Myxococcus xanthus: a study of intraspecific diversity. Appl Environ Microbiol 74: 3058-3068. (Pubitemid 351747010)
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.10 , pp. 3058-3068
    • Krug, D.1    Zurek, G.2    Revermann, O.3    Vos, M.4    Velicer, G.J.5    Muller, R.6
  • 27
    • 78650691813 scopus 로고    scopus 로고
    • The discovery of Salinosporamide K from the marine bacterium "Salinispora pacifica" by genome mining gives insight into pathway evolution
    • Eustáquio AS, Nam S-J, Penn K, Lechner A, Wilson MC, et al. (2011) The discovery of Salinosporamide K from the marine bacterium "Salinispora pacifica" by genome mining gives insight into pathway evolution. ChemBioChem 12: 61-64.
    • (2011) ChemBioChem , vol.12 , pp. 61-64
    • Eustáquio, A.S.1    Nam, S.-J.2    Penn, K.3    Lechner, A.4    Wilson, M.C.5
  • 29
    • 45549097485 scopus 로고    scopus 로고
    • Spatial scaling of functional gene diversity across various microbial taxa
    • Zhou J, Kang S, Schadt CW, Garten CT (2008) Spatial scaling of functional gene diversity across various microbial taxa. Proc Natl Acad Sci USA 105: 7768.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 7768
    • Zhou, J.1    Kang, S.2    Schadt, C.W.3    Garten, C.T.4
  • 30
    • 0032168794 scopus 로고    scopus 로고
    • Systematic functional analysis of the yeast genome
    • DOI 10.1016/S0167-7799(98)01214-1, PII S0167779998012141
    • Oliver SG, Winson MK, Kell DB, Baganz F (1998) Systematic functional analysis of the yeast genome. Trends Biotechnol 16: 373-378. (Pubitemid 28410425)
    • (1998) Trends in Biotechnology , vol.16 , Issue.9 , pp. 373-378
    • Oliver, S.G.1    Winson, M.K.2    Kell, D.B.3    Baganz, F.4
  • 31
    • 33846880715 scopus 로고    scopus 로고
    • A gender-specific discriminator in Sprague-Dawley rat urine: The deployment of a metabolic profiling strategy for biomarker discovery and identification
    • DOI 10.1016/j.ab.2006.12.037, PII S0003269706009328
    • Hodson MP, Dear GJ, Roberts AD, Haylock CL, Ball RJ, et al. (2007) A gender-specific discriminator in Sprague-Dawley rat urine: the deployment of a metabolic profiling strategy for biomarker discovery and identification. Anal Biochem 362: 182-192. (Pubitemid 46227324)
    • (2007) Analytical Biochemistry , vol.362 , Issue.2 , pp. 182-192
    • Hodson, M.P.1    Dear, G.J.2    Roberts, A.D.3    Haylock, C.L.4    Ball, R.J.5    Plumb, R.S.6    Stumpf, C.L.7    Griffin, J.L.8    Haselden, J.N.9
  • 32
    • 80053991414 scopus 로고    scopus 로고
    • Integration of metabolomics in heart disease and diabetes research: Current achievements and future outlook
    • Dunn WB, Goodacre R, Neyses L, Mamas M (2011) Integration of metabolomics in heart disease and diabetes research: current achievements and future outlook. Bioanalysis 3: 2205-2222.
    • (2011) Bioanalysis , vol.3 , pp. 2205-2222
    • Dunn, W.B.1    Goodacre, R.2    Neyses, L.3    Mamas, M.4
  • 33
    • 84857915129 scopus 로고    scopus 로고
    • Diversity and distribution of the bioactive actinobacterial genus Salinispora from sponges along the Great Barrier Reef
    • Vidgen M, Hooper JNA, Fuerst J (2011) Diversity and distribution of the bioactive actinobacterial genus Salinispora from sponges along the Great Barrier Reef. Antonie Van Leeuwenhoek 101: 603-618.
    • (2011) Antonie Van Leeuwenhoek , vol.101 , pp. 603-618
    • Vidgen, M.1    Hooper, J.N.A.2    Fuerst, J.3
  • 34
    • 84876693866 scopus 로고    scopus 로고
    • Developmental cycle and pharmaceutically relevant compounds of Salinispora actinobacteria isolated from Great Barrier Reef marine sponges
    • Ng YK, Hewavitharana AK, Webb R, Shaw PN, Fuerst JA (2012) Developmental cycle and pharmaceutically relevant compounds of Salinispora actinobacteria isolated from Great Barrier Reef marine sponges. Appl Microbiol Biotechnol 97: 3097-3108.
    • (2012) Appl Microbiol Biotechnol , vol.97 , pp. 3097-3108
    • Ng, Y.K.1    Hewavitharana, A.K.2    Webb, R.3    Shaw, P.N.4    Fuerst, J.A.5
  • 36
    • 34247163207 scopus 로고    scopus 로고
    • Seven golden rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry
    • Kind T, Fiehn O (2007) Seven golden rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry. BMC Bioinformatics 8: 105.
    • (2007) BMC Bioinformatics , vol.8 , pp. 105
    • Kind, T.1    Fiehn, O.2
  • 37
    • 37549030093 scopus 로고    scopus 로고
    • Adaptation from standing genetic variation
    • Barrett RD, Schluter D (2008) Adaptation from standing genetic variation. Trends Ecol Evol 23: 38-44.
    • (2008) Trends Ecol Evol , vol.23 , pp. 38-44
    • Barrett, R.D.1    Schluter, D.2
  • 38
    • 77954742047 scopus 로고    scopus 로고
    • Metabolomics: The chemistry between ecology and genetics
    • Macel M, Van D, Nicole M, Keurentjes JJ (2010) Metabolomics: the chemistry between ecology and genetics. Mol Ecol Resour 10: 583-593.
    • (2010) Mol Ecol Resour , vol.10 , pp. 583-593
    • Macel, M.1    Van, D.2    Nicole, M.3    Keurentjes, J.J.4
  • 39
    • 77956430155 scopus 로고    scopus 로고
    • Shared biosynthesis of the saliniketals and rifamycins in Salinispora arenicola is controlled by the sare1259-encoded cytochrome P450
    • Wilson MC, Gulder TAM, Mahmud T, Moore BS (2010) Shared biosynthesis of the saliniketals and rifamycins in Salinispora arenicola is controlled by the sare1259-encoded cytochrome P450. J Am Chem Soc 132: 12757-12765.
    • (2010) J Am Chem Soc , vol.132 , pp. 12757-12765
    • Wilson, M.C.1    Gulder, T.A.M.2    Mahmud, T.3    Moore, B.S.4
  • 40
    • 77957601090 scopus 로고    scopus 로고
    • Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism
    • Zhao W, Zhong Y, Yuan H, Wang J, Zheng H, et al. (2010) Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism. Cell Res 20: 1096-1108.
    • (2010) Cell Res , vol.20 , pp. 1096-1108
    • Zhao, W.1    Zhong, Y.2    Yuan, H.3    Wang, J.4    Zheng, H.5
  • 41
    • 0036407157 scopus 로고    scopus 로고
    • What are bacterial species?
    • Cohan FM (2002) What are bacterial species? Annu Rev Microbiol 56: 457-487.
    • (2002) Annu Rev Microbiol , vol.56 , pp. 457-487
    • Cohan, F.M.1
  • 42
    • 78649978358 scopus 로고    scopus 로고
    • Evolutionary relationships of wild hominids recapitulated by gut microbial communities
    • Ochman H, Worobey M, Kuo C-H, Ndjango J-BN, Peeters M, et al. (2010) Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biol 8: e1000546.
    • (2010) PLoS Biol , vol.8
    • Ochman, H.1    Worobey, M.2    Kuo, C.-H.3    Ndjango, J.-B.N.4    Peeters, M.5
  • 43
    • 0037455147 scopus 로고    scopus 로고
    • Salinosporamide A: A highly cytotoxic proteasome inhibitor from a novel microbial source, a marine bacterium of the new genus Salinospora
    • DOI 10.1002/anie.200390115
    • Feling RH, Buchanan GO, Mincer TJ, Kauffman CA, Jensen PR, et al. (2003) Salinosporamide A: A highly cytotoxic proteasome inhibitor from a novel microbial source, a marine bacterium of the new genus Salinospora. Angew Chem Int Ed Engl 42: 355-357. (Pubitemid 36176323)
    • (2003) Angewandte Chemie - International Edition , vol.42 , Issue.3 , pp. 355-357
    • Feling, R.H.1    Buchanan, G.O.2    Mincer, T.J.3    Kauffman, C.A.4    Jensen, P.R.5    Fenical, W.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.