메뉴 건너뛰기




Volumn 362, Issue 2, 2007, Pages 182-192

A gender-specific discriminator in Sprague-Dawley rat urine: The deployment of a metabolic profiling strategy for biomarker discovery and identification

Author keywords

Biomarker; Discovery; Discriminator; Identification; LC MS; Metabolic profiling; Metabolomics; Metabonomics; NMR

Indexed keywords

BIOMARKERS; DISCRIMINATORS; IDENTIFICATION (CONTROL SYSTEMS); LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLISM; METABOLITES; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY;

EID: 33846880715     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2006.12.037     Document Type: Article
Times cited : (44)

References (49)
  • 1
    • 0032694577 scopus 로고    scopus 로고
    • "Metabonomics": understanding the metabolic responses of living systems to pathophysiological stimuli via multivariate statistical analysis of biological NMR spectroscopic data
    • Nicholson J.K., Lindon J.C., and Holmes E. "Metabonomics": understanding the metabolic responses of living systems to pathophysiological stimuli via multivariate statistical analysis of biological NMR spectroscopic data. Xenobiotica 29 (1999) 1181-1189
    • (1999) Xenobiotica , vol.29 , pp. 1181-1189
    • Nicholson, J.K.1    Lindon, J.C.2    Holmes, E.3
  • 2
    • 0027972888 scopus 로고
    • Studies on the comparative toxicity of S-(1,2-dichlorovinyl)-l-cysteine, S-(1,2-dichlorovinyl)-l-homocysteine, and 1,1,2-trichloro-3,3,3-trifluoro-1-propene in the Fischer 344 rat
    • Anthony M.L., Beddell C.R., Lindon J.C., and Nicholson J.K. Studies on the comparative toxicity of S-(1,2-dichlorovinyl)-l-cysteine, S-(1,2-dichlorovinyl)-l-homocysteine, and 1,1,2-trichloro-3,3,3-trifluoro-1-propene in the Fischer 344 rat. Arch. Toxicol. 69 (1994) 99-110
    • (1994) Arch. Toxicol. , vol.69 , pp. 99-110
    • Anthony, M.L.1    Beddell, C.R.2    Lindon, J.C.3    Nicholson, J.K.4
  • 7
    • 0034530607 scopus 로고    scopus 로고
    • A metabonomic approach to the investigation of drug-induced phospholipidosis: an NMR spectroscopy and pattern recognition study
    • Nicholls A.W., Nicholson J.K., Haselden J.N., and Waterfield C.J. A metabonomic approach to the investigation of drug-induced phospholipidosis: an NMR spectroscopy and pattern recognition study. Biomarkers 5 (2000) 410-423
    • (2000) Biomarkers , vol.5 , pp. 410-423
    • Nicholls, A.W.1    Nicholson, J.K.2    Haselden, J.N.3    Waterfield, C.J.4
  • 8
    • 0142138236 scopus 로고    scopus 로고
    • Metabonomics: NMR spectroscopy and pattern recognition analysis of body fluids and tissues for characterisation of xenobiotic toxicity and disease diagnosis
    • Griffin J.L. Metabonomics: NMR spectroscopy and pattern recognition analysis of body fluids and tissues for characterisation of xenobiotic toxicity and disease diagnosis. Curr. Opin. Chem. Biol. 7 (2003) 648-654
    • (2003) Curr. Opin. Chem. Biol. , vol.7 , pp. 648-654
    • Griffin, J.L.1
  • 9
    • 33646595378 scopus 로고    scopus 로고
    • The Cinderella story of metabolic profiling: does metabolomics get to go to the functional genomics ball?
    • Griffin J.L. The Cinderella story of metabolic profiling: does metabolomics get to go to the functional genomics ball?. Philos. Trans. R. Soc. Lond. B 361 (2006) 147-161
    • (2006) Philos. Trans. R. Soc. Lond. B , vol.361 , pp. 147-161
    • Griffin, J.L.1
  • 13
    • 0025770584 scopus 로고
    • Taurine, a possible urinary marker of liver damage: a study of taurine excretion in carbon tetrachloride-treated rats
    • Waterfield C.J., Turton J.A., Scales M.D.C., and Timbrell J.A. Taurine, a possible urinary marker of liver damage: a study of taurine excretion in carbon tetrachloride-treated rats. Arch. Toxicol. 65 (1991) 548-555
    • (1991) Arch. Toxicol. , vol.65 , pp. 548-555
    • Waterfield, C.J.1    Turton, J.A.2    Scales, M.D.C.3    Timbrell, J.A.4
  • 16
    • 23044483202 scopus 로고    scopus 로고
    • Sexual dimorphism in urinary metabolite profiles of Han Wistar rats revealed by nuclear-magnetic-resonance-based metabonomics
    • Stanley E.G., Bailey N.J.C., Bollard M.E., Haselden J.N., Waterfield C.J., Holmes E., and Nicholson J.K. Sexual dimorphism in urinary metabolite profiles of Han Wistar rats revealed by nuclear-magnetic-resonance-based metabonomics. Anal. Biochem. 343 (2005) 195-202
    • (2005) Anal. Biochem. , vol.343 , pp. 195-202
    • Stanley, E.G.1    Bailey, N.J.C.2    Bollard, M.E.3    Haselden, J.N.4    Waterfield, C.J.5    Holmes, E.6    Nicholson, J.K.7
  • 19
    • 21144435518 scopus 로고    scopus 로고
    • A rapid screening approach to metabonomics using UPLC and oa-TOF mass spectrometry: application to age, gender, and diurnal variation in normal/Zucker obese rats and black, white, and nude mice
    • Plumb R.S., Granger J.H., Stumpf C.L., Johnson K.A., Smith B.W., Gaulitz S., Wilson I.D., and Castro-Perez J. A rapid screening approach to metabonomics using UPLC and oa-TOF mass spectrometry: application to age, gender, and diurnal variation in normal/Zucker obese rats and black, white, and nude mice. Analyst 130 (2005) 844-849
    • (2005) Analyst , vol.130 , pp. 844-849
    • Plumb, R.S.1    Granger, J.H.2    Stumpf, C.L.3    Johnson, K.A.4    Smith, B.W.5    Gaulitz, S.6    Wilson, I.D.7    Castro-Perez, J.8
  • 20
    • 21444445989 scopus 로고    scopus 로고
    • 1H NMR spectroscopy and liquid chromatography-mass spectrometry applied to the investigation of metabolic changes caused by gentamicin-induced nephrotoxicity in the rat
    • 1H NMR spectroscopy and liquid chromatography-mass spectrometry applied to the investigation of metabolic changes caused by gentamicin-induced nephrotoxicity in the rat. Biomarkers 10 (2005) 173-187
    • (2005) Biomarkers , vol.10 , pp. 173-187
    • Lenz, E.M.1    Bright, J.2    Knight, R.3    Westwood, F.R.4    Davies, D.5    Major, H.6    Wilson, I.D.7
  • 23
    • 17444404226 scopus 로고    scopus 로고
    • High resolution "ultra performance" liquid chromatography coupled to oa-TOF mass spectrometry as a tool for differential metabolic pathway profiling in functional genomic studies
    • Wilson I.D., Nicholson J.K., Castro-Perez J., Granger J.H., Johnson K.A., Smith B.W., and Plumb R.S. High resolution "ultra performance" liquid chromatography coupled to oa-TOF mass spectrometry as a tool for differential metabolic pathway profiling in functional genomic studies. J. Proteome Res. 4 (2005) 591-598
    • (2005) J. Proteome Res. , vol.4 , pp. 591-598
    • Wilson, I.D.1    Nicholson, J.K.2    Castro-Perez, J.3    Granger, J.H.4    Johnson, K.A.5    Smith, B.W.6    Plumb, R.S.7
  • 25
    • 25444526868 scopus 로고    scopus 로고
    • Processing methods for differential analysis of LC/MS profile data
    • Katajamaa M., and Oresic M. Processing methods for differential analysis of LC/MS profile data. BMC Bioinformatics 6 (2005) 179
    • (2005) BMC Bioinformatics , vol.6 , pp. 179
    • Katajamaa, M.1    Oresic, M.2
  • 27
    • 28444443330 scopus 로고    scopus 로고
    • Metabolic fingerprinting of rat urine by LC/MS: II. Data pretreatment methods for handling of complex data
    • Idborg H., Zamani L., Edlund P.-O., Schuppe-Koistinen I., and Jacobsson S.P. Metabolic fingerprinting of rat urine by LC/MS: II. Data pretreatment methods for handling of complex data. J. Chromatogr. B 828 (2005) 14-20
    • (2005) J. Chromatogr. B , vol.828 , pp. 14-20
    • Idborg, H.1    Zamani, L.2    Edlund, P.-O.3    Schuppe-Koistinen, I.4    Jacobsson, S.P.5
  • 28
    • 32444446805 scopus 로고    scopus 로고
    • XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
    • Smith C.A., Want E.J., O'Maille G., Abagyan R., and Siuzdak G. XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Anal. Chem. 78 (2006) 779-787
    • (2006) Anal. Chem. , vol.78 , pp. 779-787
    • Smith, C.A.1    Want, E.J.2    O'Maille, G.3    Abagyan, R.4    Siuzdak, G.5
  • 29
    • 33646743247 scopus 로고    scopus 로고
    • Nonlinear data alignment for UPLC-MS and HPLC-MS based metabolomics: quantitative analysis of endogenous and exogenous metabolites in human serum
    • Nordström A., O'Maille G., Qin C., and Siuzdak G. Nonlinear data alignment for UPLC-MS and HPLC-MS based metabolomics: quantitative analysis of endogenous and exogenous metabolites in human serum. Anal. Chem. 78 (2006) 3289-3295
    • (2006) Anal. Chem. , vol.78 , pp. 3289-3295
    • Nordström, A.1    O'Maille, G.2    Qin, C.3    Siuzdak, G.4
  • 30
    • 0002373815 scopus 로고
    • Multivariate data analysis: its methods
    • Mellinger M. Multivariate data analysis: its methods. Chemometr. Intell. Lab. Syst. 2 (1987) 29-36
    • (1987) Chemometr. Intell. Lab. Syst. , vol.2 , pp. 29-36
    • Mellinger, M.1
  • 33
    • 33846869634 scopus 로고    scopus 로고
    • L. Eriksson, E. Johansson, N. Kettaneh-Wold, S. Wold, Multi- and Megavariate Data Analysis: Principles and Applications, Umetrics, Umeå, Sweden, 2001.
  • 34
    • 5144233105 scopus 로고
    • MLEV-17-based two-dimensional homonuclear magnetization transfer spectroscopy
    • Bax A., and Davis D.G. MLEV-17-based two-dimensional homonuclear magnetization transfer spectroscopy. J. Magn. Reson. 65 (1985) 355-360
    • (1985) J. Magn. Reson. , vol.65 , pp. 355-360
    • Bax, A.1    Davis, D.G.2
  • 35
    • 44949290287 scopus 로고
    • Rapid-pulsing artifacts in double-quantum-filtered COSY
    • Derome A., and Williamson M. Rapid-pulsing artifacts in double-quantum-filtered COSY. J. Magn. Reson. 88 (1990) 177-185
    • (1990) J. Magn. Reson. , vol.88 , pp. 177-185
    • Derome, A.1    Williamson, M.2
  • 36
    • 44949276869 scopus 로고
    • Sensitivity improvement in proton-detected two-dimensional heteronuclear correlation NMR spectroscopy
    • Palmer III A.G., Cavanagh J., Wright P.E., and Rance M. Sensitivity improvement in proton-detected two-dimensional heteronuclear correlation NMR spectroscopy. J. Magn. Reson. 93 (1991) 151-170
    • (1991) J. Magn. Reson. , vol.93 , pp. 151-170
    • Palmer III, A.G.1    Cavanagh, J.2    Wright, P.E.3    Rance, M.4
  • 37
    • 0023655753 scopus 로고
    • 13C NMR spectral techniques to the study of oligosaccharides
    • 13C NMR spectral techniques to the study of oligosaccharides. Carbohydr. Res. 166 (1987) 35-46
    • (1987) Carbohydr. Res. , vol.166 , pp. 35-46
    • Lerner, L.1    Bax, A.2
  • 38
    • 0001028964 scopus 로고
    • Gradient-enhanced spectroscopy
    • Hurd R.E. Gradient-enhanced spectroscopy. J. Magn. Reson. 87 (1990) 422-428
    • (1990) J. Magn. Reson. , vol.87 , pp. 422-428
    • Hurd, R.E.1
  • 39
    • 33846886867 scopus 로고    scopus 로고
    • PubChem database: http://pubchem.ncbi.nlm.nih.gov/search.
  • 40
    • 33846861916 scopus 로고    scopus 로고
    • METLIN database: http://metlin.scripps.edu/metabo_search.php.
  • 41
    • 33846875577 scopus 로고    scopus 로고
    • Human metabolite database (hmdb): www.hmdb.ca.
  • 42
    • 0345311216 scopus 로고
    • Detection of heteronuclear multiple-bond connectivity by 2D multiple quantum NMR
    • Bax A., and Summers M.F. Detection of heteronuclear multiple-bond connectivity by 2D multiple quantum NMR. J. Am. Chem. Soc. 108 (1986) 2093-2094
    • (1986) J. Am. Chem. Soc. , vol.108 , pp. 2093-2094
    • Bax, A.1    Summers, M.F.2
  • 43
    • 0020463090 scopus 로고
    • A proton magnetic resonance study of the 18-hydroxy derivatives of cortisol and corticosterone
    • Arison B.H., Chu M.D., and Ulick S. A proton magnetic resonance study of the 18-hydroxy derivatives of cortisol and corticosterone. J. Steroid Biochem. 17 (1982) 467-469
    • (1982) J. Steroid Biochem. , vol.17 , pp. 467-469
    • Arison, B.H.1    Chu, M.D.2    Ulick, S.3
  • 44
    • 0034816055 scopus 로고    scopus 로고
    • Excretion of corticosteroid metabolites in urine and faeces of rats
    • Bamberg E., Palme R., and Meingasser J.G. Excretion of corticosteroid metabolites in urine and faeces of rats. Lab. Anim. 35 (2001) 307-314
    • (2001) Lab. Anim. , vol.35 , pp. 307-314
    • Bamberg, E.1    Palme, R.2    Meingasser, J.G.3
  • 45
    • 13444257410 scopus 로고    scopus 로고
    • Frequent serial fecal corticoid measures from rats reflect circadian and ovarian corticosterone rhythms
    • Cavigelli S.A., Monfort S.L., Whitney T.K., Mechref Y.S., Novotny M., and McClintock M.K. Frequent serial fecal corticoid measures from rats reflect circadian and ovarian corticosterone rhythms. J. Endocrinol. 184 (2005) 153-163
    • (2005) J. Endocrinol. , vol.184 , pp. 153-163
    • Cavigelli, S.A.1    Monfort, S.L.2    Whitney, T.K.3    Mechref, Y.S.4    Novotny, M.5    McClintock, M.K.6
  • 46
    • 0037442105 scopus 로고    scopus 로고
    • Effects of sex and time of day on metabolism and excretion of corticosterone in urine and feces of mice
    • Touma C., Sachser N., Möstl E., and Palme R. Effects of sex and time of day on metabolism and excretion of corticosterone in urine and feces of mice. Gen. Comp. Endocrinol. 130 (2003) 267-278
    • (2003) Gen. Comp. Endocrinol. , vol.130 , pp. 267-278
    • Touma, C.1    Sachser, N.2    Möstl, E.3    Palme, R.4
  • 47
    • 0030752488 scopus 로고    scopus 로고
    • Distinct regulation of two hydroxysteroid sulfotransferases, ST2A1 and ST2A2, by growth hormone: a unique type of growth hormone regulation in rats
    • Ueda R., Shimada M., Hashimoto H., Ishikawa H., and Yamazoe Y. Distinct regulation of two hydroxysteroid sulfotransferases, ST2A1 and ST2A2, by growth hormone: a unique type of growth hormone regulation in rats. J. Pharmacol. Exp. Ther. 282 (1997) 1117-1121
    • (1997) J. Pharmacol. Exp. Ther. , vol.282 , pp. 1117-1121
    • Ueda, R.1    Shimada, M.2    Hashimoto, H.3    Ishikawa, H.4    Yamazoe, Y.5
  • 48
    • 0017277576 scopus 로고
    • Enzymatic sulfation of steroids: I. The enzymatic basis for the sex difference in cortisol sulfation by rat liver preparations
    • Singer S.S., Giera D., Johnson J., and Sylvester S. Enzymatic sulfation of steroids: I. The enzymatic basis for the sex difference in cortisol sulfation by rat liver preparations. Endocrinology 98 (1976) 963-974
    • (1976) Endocrinology , vol.98 , pp. 963-974
    • Singer, S.S.1    Giera, D.2    Johnson, J.3    Sylvester, S.4
  • 49
    • 0025851901 scopus 로고
    • Age and gender-related gene expression of hydroxysteroid sulfotransferase-α in rat liver
    • Runge-Morris M., and Wilusz J. Age and gender-related gene expression of hydroxysteroid sulfotransferase-α in rat liver. Biochem. Biophys. Res. Commun. 175 (1991) 1051-1056
    • (1991) Biochem. Biophys. Res. Commun. , vol.175 , pp. 1051-1056
    • Runge-Morris, M.1    Wilusz, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.