-
2
-
-
60149112933
-
The dynamic landscapes of rna architecture
-
Cruz JA, Westhof E. 2009. The dynamic landscapes of RNA architecture. Cell 136:604-9
-
(2009)
Cell
, vol.136
, pp. 604-609
-
-
Cruz, J.A.1
Westhof, E.2
-
3
-
-
80053441923
-
Dynamic protein-dna recognition: Beyond what can be seen
-
Fuxreiter M, Simon I, Bondos S. 2011. Dynamic protein-DNA recognition: Beyond what can be seen. Trends Biochem. Sci. 36:415-23
-
(2011)
Trends Biochem. Sci
, vol.36
, pp. 415-423
-
-
Fuxreiter, M.1
Simon, I.2
Bondos, S.3
-
4
-
-
84860477162
-
Frontiers in molecular dynamics simulations of dna
-
Perez A, Luque FJ, Orozco M. 2012. Frontiers in molecular dynamics simulations of DNA. Acc. Chem. Res. 45:196-205
-
(2012)
Acc. Chem. Res
, vol.45
, pp. 196-205
-
-
Perez, A.1
Luque, F.J.2
Orozco, M.3
-
5
-
-
57549118722
-
Rna folding and ribosome assembly
-
Woodson SA. 2008. RNA folding and ribosome assembly. Curr. Opin. Chem. Biol. 12:667-73
-
(2008)
Curr. Opin. Chem. Biol
, vol.12
, pp. 667-673
-
-
Woodson, S.A.1
-
7
-
-
0036761206
-
Rational ligand design for rna: The role of static structure and conformational flexibility in target recognition
-
Hermann T. 2002. Rational ligand design for RNA: The role of static structure and conformational flexibility in target recognition. Biochimie 84:869-75
-
(2002)
Biochimie
, vol.84
, pp. 869-875
-
-
Hermann, T.1
-
8
-
-
84867195988
-
Synthetic rna switches as a tool for temporal and spatial control over gene expression
-
Chang AL, Wolf JJ, Smolke CD. 2012. Synthetic RNA switches as a tool for temporal and spatial control over gene expression. Curr. Opin. Biotechnol. 23:679-88
-
(2012)
Curr. Opin. Biotechnol
, vol.23
, pp. 679-688
-
-
Chang, A.L.1
Wolf, J.J.2
Smolke, C.D.3
-
9
-
-
0026320866
-
The energy landscapes and motions of proteins
-
Frauenfelder H, Sligar SG, Wolynes PG. 1991. The energy landscapes and motions of proteins. Science 254:1598-603
-
(1991)
Science
, vol.254
, pp. 1598-1603
-
-
Frauenfelder, H.1
Sligar, S.G.2
Wolynes, P.G.3
-
10
-
-
77749311718
-
Bridging the solution divide: Comprehensive structural analyses of dynamic rna, dna, and protein assemblies by small-Angle x-ray scattering
-
Rambo RP, Tainer JA. 2010. Bridging the solution divide: Comprehensive structural analyses of dynamic RNA, DNA, and protein assemblies by small-Angle X-ray scattering. Curr. Opin. Struct. Biol. 20:128-37
-
(2010)
Curr. Opin. Struct. Biol
, vol.20
, pp. 128-137
-
-
Rambo, R.P.1
Tainer, J.A.2
-
11
-
-
0345169163
-
Small-Angle scattering: A view on the properties, structures and structural changes of biological macromolecules in solution
-
Koch MHJ, Vachette P, Svergun DI. 2003. Small-Angle scattering: A view on the properties, structures and structural changes of biological macromolecules in solution. Q. Rev. Biophys. 36:147-227
-
(2003)
Q. Rev. Biophys
, vol.36
, pp. 147-227
-
-
Koch, M.H.J.1
Vachette, P.2
Svergun, D.I.3
-
12
-
-
37149049312
-
X-ray solution scattering (saxs) combined with crystallography and computation: Defining accurate macromolecular structures, conformations and assemblies in solution
-
Putnam CD, Hammel M, Hura GL, Tainer JA. 2007. X-ray solution scattering (SAXS) combined with crystallography and computation: Defining accurate macromolecular structures, conformations and assemblies in solution. Q. Rev. Biophys. 40:191-285
-
(2007)
Q. Rev. Biophys
, vol.40
, pp. 191-285
-
-
Putnam, C.D.1
Hammel, M.2
Hura, G.L.3
Tainer, J.A.4
-
13
-
-
0034641612
-
Mg2+-dependent compaction and folding of yeast trnaphe and the catalytic domain of the B. Subtilis rnase P RNA determined by smallangle X-ray scattering
-
Fang X, Littrell K, Yang XJ, Henderson SJ, Siefert S, et al. 2000. Mg2+-dependent compaction and folding of yeast tRNAPhe and the catalytic domain of the B. subtilis RNase P RNA determined by smallangle X-ray scattering. Biochemistry 39:11107-13
-
(2000)
Biochemistry
, vol.39
, pp. 11107-11113
-
-
Fang, X.1
Littrell, K.2
Yang, X.J.3
Henderson, S.J.4
Siefert, S.5
-
14
-
-
77955602524
-
Calculation of accurate small angle x-ray scattering curves from coarse-grained protein models
-
Stovgaard K, Andreetta C, Ferkinghoff-Borg J, Hamelryck T. 2010. Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models. BMC Bioinforma. 11:429
-
(2010)
BMC Bioinforma
, vol.11
, pp. 429
-
-
Stovgaard, K.1
Andreetta, C.2
Ferkinghoff-Borg, J.3
Hamelryck, T.4
-
15
-
-
33846839463
-
A physical picture of atomic motions within the dickerson dna dodecamer in solution derived from joint ensemble refinement against nmr and large-Angle x-ray scattering data
-
Schwieters CD, Clore GM. 2007. A physical picture of atomic motions within the Dickerson DNA dodecamer in solution derived from joint ensemble refinement against NMR and large-Angle X-ray scattering data. Biochemistry 46:1152-66
-
(2007)
Biochemistry
, vol.46
, pp. 1152-1166
-
-
Schwieters, C.D.1
Clore, G.M.2
-
16
-
-
0029185933
-
Crysol: A program to evaluate x-ray solution scattering of biological macromolecules from atomic coordinates
-
Svergun D, Barberato C, Koch MHJ. 1995. CRYSOL: A program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates. J. Appl. Crystallogr. 28:768-73
-
(1995)
J. Appl. Crystallogr
, vol.28
, pp. 768-773
-
-
Svergun, D.1
Barberato, C.2
Koch, M.H.J.3
-
18
-
-
77957120017
-
Rapid global structure determination of large rna and rna complexes using nmr and small-Angle x-ray scattering
-
Wang YX, Zuo X, Wang J, Yu P, Butcher SE. 2010. Rapid global structure determination of large RNA and RNA complexes using NMR and small-Angle X-ray scattering. Methods 52:180-91
-
(2010)
Methods
, vol.52
, pp. 180-191
-
-
Wang, Y.X.1
Zuo, X.2
Wang, J.3
Yu, P.4
Butcher, S.E.5
-
19
-
-
84878157779
-
Nucleic acid structure characterization by small angle x-ray scattering (saxs
-
Burke JE, Butcher SE. 2012. Nucleic acid structure characterization by small angle X-ray scattering (SAXS). Curr. Protoc. Nucleic Acid Chem. 2012:7.18
-
(2012)
Curr. Protoc. Nucleic Acid Chem
, vol.2012
, pp. 7-18
-
-
Burke, J.E.1
Butcher, S.E.2
-
20
-
-
54049155019
-
Solution structure of trnaval from refinement of homology model against residual dipolar coupling and saxs data
-
Grishaev A, Ying J, Canny MD, Pardi A, Bax A. 2008. Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data. J. Biomol. NMR 42:99-109
-
(2008)
J. Biomol. NMR
, vol.42
, pp. 99-109
-
-
Grishaev, A.1
Ying, J.2
Canny, M.D.3
Pardi, A.4
Bax, A.5
-
21
-
-
55849140201
-
Amolecular ruler for measuring quantitative distance distributions
-
Mathew-Fenn RS, Das R, Silverman JA, Walker PA, Harbury PA. 2008. Amolecular ruler for measuring quantitative distance distributions. PLoS One 3:e3229
-
(2008)
PLoS One
, vol.3
-
-
Mathew-Fenn, R.S.1
Das, R.2
Silverman, J.A.3
Walker, P.A.4
Harbury, P.A.5
-
23
-
-
84876229136
-
Structural ensemble andmicroscopic elasticity of freely diffusing DNA by direct measurement of fluctuations
-
Shi X, Herschlag D, Harbury PA. 2013. Structural ensemble andmicroscopic elasticity of freely diffusing DNA by direct measurement of fluctuations. Proc. Natl. Acad. Sci. USA 110:E1444-51
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
-
-
Shi, X.1
Herschlag, D.2
Harbury, P.A.3
-
25
-
-
34247891557
-
Structural characterization of flexible proteins using small-Angle X-ray scattering
-
Bernado P, Mylonas E, PetoukhovMV, Blackledge M, Svergun DI. 2007. Structural characterization of flexible proteins using small-Angle X-ray scattering. J. Am. Chem. Soc. 129:5656-64
-
(2007)
J. Am. Chem. Soc
, vol.129
, pp. 5656-5664
-
-
Bernado, P.1
Mylonas, E.2
Petoukhov, M.V.3
Blackledge, M.4
Svergun, D.I.5
-
26
-
-
79958049200
-
New era of molecular structure and dynamics from solution scattering experiments
-
Sosnick TR, Woodson SA. 2011. New era of molecular structure and dynamics from solution scattering experiments. Biopolymers 95:503-4
-
(2011)
Biopolymers
, vol.95
, pp. 503-504
-
-
Sosnick, T.R.1
Woodson, S.A.2
-
27
-
-
79958032899
-
Invited review: Probing the structures ofmuscle regulatory proteins using small-Angle solution scattering
-
Lu Y, Jeffries CM, Trewhella J. 2011. Invited review: Probing the structures ofmuscle regulatory proteins using small-Angle solution scattering. Biopolymers 95:505-16
-
(2011)
Biopolymers
, vol.95
, pp. 505-516
-
-
Lu, Y.1
Jeffries, C.M.2
Trewhella, J.3
-
28
-
-
30844441193
-
Dynamic transition in tRNA is solvent induced
-
Caliskan G, Briber RM, Thirumalai D, Garcia-Sakai V, Woodson SA, Sokolov AP. 2006. Dynamic transition in tRNA is solvent induced. J. Am. Chem. Soc. 128:32-33
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 32-33
-
-
Caliskan, G.1
Briber, R.M.2
Thirumalai, D.3
Garcia-Sakai, V.4
Woodson, S.A.5
Sokolov, A.P.6
-
29
-
-
80054757936
-
The dynamics of unfolded versus folded tRNA: The role of electrostatic interactions
-
Roh JH, Tyagi M, Briber RM, Woodson SA, Sokolov AP. 2011. The dynamics of unfolded versus folded tRNA: The role of electrostatic interactions. J. Am. Chem. Soc. 133:16406-9
-
(2011)
J. Am. Chem. Soc
, vol.133
, pp. 16406-16409
-
-
Roh, J.H.1
Tyagi, M.2
Briber, R.M.3
Woodson, S.A.4
Sokolov, A.P.5
-
30
-
-
77949541339
-
Use of chemical shifts for structural studies of nucleic acids
-
Lam SL, Chi LM. 2010. Use of chemical shifts for structural studies of nucleic acids. Prog. Nucl. Magn. Reson. Spectrosc. 56:289-310
-
(2010)
Prog. Nucl. Magn. Reson. Spectrosc
, vol.56
, pp. 289-310
-
-
Lam, S.L.1
Chi, L.M.2
-
31
-
-
77950403640
-
Defining conformational ensembles of intrinsically disordered and partially folded proteins directly from chemical shifts
-
Jensen MR, Salmon L, NodetG, Blackledge M. 2010. Defining conformational ensembles of intrinsically disordered and partially folded proteins directly from chemical shifts. J. Am. Chem. Soc. 132:1270-72
-
(2010)
J. Am. Chem. Soc
, vol.132
, pp. 1270-1272
-
-
Jensen, M.R.1
Salmon, L.2
Nodet, G.3
Blackledge, M.4
-
32
-
-
77955498721
-
Using nmr chemical shifts as structural restraints in molecular dynamics simulations of proteins
-
Robustelli P, Kohlhoff K, Cavalli A, Vendruscolo M. 2010. Using NMR chemical shifts as structural restraints in molecular dynamics simulations of proteins. Structure 18:923-33
-
(2010)
Structure
, vol.18
, pp. 923-933
-
-
Robustelli, P.1
Kohlhoff, K.2
Cavalli, A.3
Vendruscolo, M.4
-
34
-
-
0000321069
-
Analysis of 1hchemical shifts in dna: Assessment of the reliability of 1h chemical shift calculations for use in structure refinement
-
Wijmenga SS, Kruithof M, Hilbers CW. 1997. Analysis of 1Hchemical shifts in DNA: Assessment of the reliability of 1H chemical shift calculations for use in structure refinement. J. Biomol. NMR 10:337-50
-
(1997)
J. Biomol. NMR
, vol.10
, pp. 337-350
-
-
Wijmenga, S.S.1
Kruithof, M.2
Hilbers, C.W.3
-
35
-
-
84873058309
-
Database proton NMR chemical shifts for RNA signal assignment and validation
-
Barton S, Heng X, Johnson BA, Summers MF. 2013. Database proton NMR chemical shifts for RNA signal assignment and validation. J. Biomol. NMR 55:33-46
-
(2013)
J. Biomol. NMR
, vol.55
, pp. 33-46
-
-
Barton, S.1
Heng, X.2
Johnson, B.A.3
Summers, M.F.4
-
36
-
-
84874147692
-
Utility of 1H NMR chemical shifts in determining RNA structure and dynamics
-
Frank AT, Horowitz S, Andricioaei I, Al-Hashimi HM. 2013. Utility of 1H NMR chemical shifts in determining RNA structure and dynamics. J. Phys. Chem. B 117:2045-52
-
(2013)
J. Phys. Chem
, vol.B117
, pp. 2045-2052
-
-
Frank, A.T.1
Horowitz, S.2
Andricioaei, I.3
Al-Hashimi, H.M.4
-
37
-
-
0347358202
-
Theories of chemical shift anisotropies in proteins and nucleic acids
-
Sitkoff D, Case DA. 1998. Theories of chemical shift anisotropies in proteins and nucleic acids. Prog. Nucl. Magn. Reson. Spectrosc. 32:165-90
-
(1998)
Prog. Nucl. Magn. Reson. Spectrosc
, vol.32
, pp. 165-190
-
-
Sitkoff, D.1
Case, D.A.2
-
38
-
-
84884982470
-
A geometrical parametrization of C1-C5-RNA ribose chemical shifts calculated by density functional theory
-
Suardiaz R, Sahakyan AB, Vendruscolo M. 2013. A geometrical parametrization of C1-C5-RNA ribose chemical shifts calculated by density functional theory. J. Chem. Phys. 139:034101
-
(2013)
J. Chem. Phys
, vol.139
, pp. 034101
-
-
Suardiaz, R.1
Sahakyan, A.B.2
Vendruscolo, M.3
-
39
-
-
0029050883
-
Nuclear magnetic dipole interactions in field-oriented proteins: Information for structure determination in solution
-
Tolman JR, Flanagan JM, Kennedy MA, Prestegard JH. 1995. Nuclear magnetic dipole interactions in field-oriented proteins: Information for structure determination in solution. Proc. Natl. Acad. Sci. USA 92:9279-83
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 9279-9283
-
-
Tolman, J.R.1
Flanagan, J.M.2
Kennedy, M.A.3
Prestegard, J.H.4
-
41
-
-
0031760503
-
Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions
-
Hansen MR, Mueller L, Pardi A. 1998. Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions. Nat. Struct. Biol. 5:1065-74
-
(1998)
Nat. Struct. Biol
, vol.5
, pp. 1065-1074
-
-
Hansen, M.R.1
Mueller, L.2
Pardi, A.3
-
42
-
-
0032517327
-
Measurement of residual dipolar couplings of macromolecules aligned in the nematic phase of a colloidal suspension of rod-shaped viruses
-
Clore GM, Starich MR, Gronenborn AM. 1998. Measurement of residual dipolar couplings of macromolecules aligned in the nematic phase of a colloidal suspension of rod-shaped viruses. J. Am. Chem. Soc. 120:10571-72
-
(1998)
J. Am. Chem. Soc
, vol.120
, pp. 10571-10572
-
-
Clore, G.M.1
Starich, M.R.2
Gronenborn, A.M.3
-
43
-
-
0030722243
-
Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium
-
Tjandra N, Bax A. 1997. Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium. Science 278:1111-14
-
(1997)
Science
, vol.278
, pp. 1111-1114
-
-
Tjandra, N.1
Bax, A.2
-
44
-
-
14844353335
-
Recent progress in the study of biomolecular structure and dynamics in solution from residual dipolar couplings
-
Blackledge M. 2005. Recent progress in the study of biomolecular structure and dynamics in solution from residual dipolar couplings. Prog. Nucl. Magn. Res. Spectrosc. 46:23-61
-
(2005)
Prog. Nucl. Magn. Res. Spectrosc
, vol.46
, pp. 23-61
-
-
Blackledge, M.1
-
45
-
-
33646931175
-
NMR residual dipolar couplings as probes of biomolecular dynamics
-
Tolman JR, Ruan K. 2006. NMR residual dipolar couplings as probes of biomolecular dynamics. Chem. Rev. 106:1720-36
-
(2006)
Chem. Rev
, vol.106
, pp. 1720-1736
-
-
Tolman, J.R.1
Ruan, K.2
-
46
-
-
34547820982
-
Review NMR studies of RNA dynamics and structural plasticity using NMR residual dipolar couplings
-
Getz M, Sun X, Casiano-Negroni A, Zhang Q, Al-Hashimi HM. 2007. Review NMR studies of RNA dynamics and structural plasticity using NMR residual dipolar couplings. Biopolymers 86:384-402
-
(2007)
Biopolymers
, vol.86
, pp. 384-402
-
-
Getz, M.1
Sun, X.2
Casiano-Negroni, A.3
Zhang, Q.4
Al-Hashimi, H.M.5
-
47
-
-
80155177766
-
Characterizing RNA dynamics at atomic resolution using solution-state NMR spectroscopy
-
Bothe JR, Nikolova EN, Eichhorn CD, Chugh J, Hansen AL, Al-Hashimi HM. 2011. Characterizing RNA dynamics at atomic resolution using solution-state NMR spectroscopy. Nat. Methods 8:919-31
-
(2011)
Nat. Methods
, vol.8
, pp. 919-931
-
-
Bothe, J.R.1
Nikolova, E.N.2
Eichhorn, C.D.3
Chugh, J.4
Hansen, A.L.5
Al-Hashimi, H.M.6
-
48
-
-
0034685436
-
Predicition of sterically induced alignment in a dilute liquid crystalline phase: Aid to protein structure determination by NMR
-
Zweckstetter M, Bax A. 2000. Predicition of sterically induced alignment in a dilute liquid crystalline phase: Aid to protein structure determination by NMR. J. Am. Chem. Soc. 122:3791-92
-
(2000)
J. Am. Chem. Soc
, vol.122
, pp. 3791-3792
-
-
Zweckstetter, M.1
Bax, A.2
-
49
-
-
37549017736
-
Visualizing spatially correlated dynamics that directs RNA conformational transitions
-
Zhang Q, Stelzer AC, Fisher CK, Al-Hashimi HM. 2007. Visualizing spatially correlated dynamics that directs RNA conformational transitions. Nature 450:1263-67
-
(2007)
Nature
, vol.450
, pp. 1263-1267
-
-
Zhang, Q.1
Stelzer, A.C.2
Fisher, C.K.3
Al-Hashimi, H.M.4
-
50
-
-
31944446215
-
Resolving the motional modes that code for RNA adaptation
-
Zhang Q, Sun X, Watt ED, Al-Hashimi HM. 2006. Resolving the motional modes that code for RNA adaptation. Science 311:653-56
-
(2006)
Science
, vol.311
, pp. 653-656
-
-
Zhang, Q.1
Sun, X.2
Watt, E.D.3
Al-Hashimi, H.M.4
-
51
-
-
33751248765
-
Impact of static and dynamic A-form heterogeneity on the determination of RNA global structural dynamics using NMR residual dipolar couplings
-
Musselman C, Pitt SW, Gulati K, Foster LL, Andricioaei I, Al-Hashimi HM. 2006. Impact of static and dynamic A-form heterogeneity on the determination of RNA global structural dynamics using NMR residual dipolar couplings. J. Biomol. NMR 36:235-49
-
(2006)
J. Biomol. NMR
, vol.36
, pp. 235-249
-
-
Musselman, C.1
Pitt, S.W.2
Gulati, K.3
Foster, L.L.4
Andricioaei, I.5
Al-Hashimi, H.M.6
-
52
-
-
0032500340
-
Modulation of the alignment tensor of macromolecules dissolved in a dilute liquid crystalline medium
-
Ramirez BE, Bax A. 1998. Modulation of the alignment tensor of macromolecules dissolved in a dilute liquid crystalline medium. J. Am. Chem. Soc. 120:9106-7
-
(1998)
J. Am. Chem. Soc
, vol.120
, pp. 9106-9107
-
-
Ramirez, B.E.1
Bax, A.2
-
53
-
-
0037157093
-
Model-free analysis of protein backbone motion from residual dipolar couplings
-
Peti W, Meiler J, Bruschweiler R, Griesinger C. 2002. Model-free analysis of protein backbone motion from residual dipolar couplings. J. Am. Chem. Soc. 124:5822-33
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 5822-5833
-
-
Peti, W.1
Meiler, J.2
Bruschweiler, R.3
Griesinger, C.4
-
54
-
-
0035977613
-
Field-And phage-induced dipolar couplings in a homodimeric DNA quadruplex, relative orientation of G (C-A) triad and Gtetrad motifs and direct determination of C2 symmetry axis orientation
-
Al-HashimiHM, Majumdar A, Gorin A, Kettani A, Skripkin E, Patel DJ. 2001. Field-And phage-induced dipolar couplings in a homodimeric DNA quadruplex, relative orientation of G (C-A) triad and Gtetrad motifs and direct determination of C2 symmetry axis orientation. J. Am. Chem. Soc. 123:633-40
-
(2001)
J. Am. Chem. Soc
, vol.123
, pp. 633-640
-
-
Al-Hashimi, H.M.1
Majumdar, A.2
Gorin, A.3
Kettani, A.4
Skripkin, E.5
Patel, D.J.6
-
55
-
-
38349001213
-
Comparison of alignment tensors generated for native trnaval using magnetic fields and liquid crystalline media
-
Latham MP, Hanson P, Brown DJ, Pardi A. 2008. Comparison of alignment tensors generated for native tRNAVal using magnetic fields and liquid crystalline media. J. Biomol. NMR 40:83-94
-
(2008)
J. Biomol. NMR
, vol.40
, pp. 83-94
-
-
Latham, M.P.1
Hanson, P.2
Brown, D.J.3
Pardi, A.4
-
56
-
-
72149096007
-
Variable helix elongation as a tool to modulate RNA alignment and motional couplings
-
DethoffEA, Hansen AL, Zhang Q, Al-HashimiHM. 2010. Variable helix elongation as a tool to modulate RNA alignment and motional couplings. J. Magn. Reson. 202:117-21
-
(2010)
J. Magn. Reson
, vol.202
, pp. 117-121
-
-
Dethoff, E.A.1
Hansen, A.L.2
Zhang, Q.3
Al-Hashimi, H.M.4
-
57
-
-
84865640552
-
Independent alignment of RNA for dynamic studies using residual dipolar couplings
-
Bardaro MF Jr, Varani G. 2012. Independent alignment of RNA for dynamic studies using residual dipolar couplings. J. Biomol. NMR 54:69-80
-
(2012)
J. Biomol. NMR
, vol.54
, pp. 69-80
-
-
Bardaro Jr., M.F.1
Varani, G.2
-
58
-
-
0030719460
-
Magnetic field dependent amide 15n chemical shifts in a protein-dna complex resulting from magnetic ordering in solution
-
Ottiger M, Tjandra N, Bax A. 1997. Magnetic field dependent amide 15N chemical shifts in a protein-DNA complex resulting from magnetic ordering in solution. J. Am. Chem. Soc. 119:9825-30
-
(1997)
J. Am. Chem. Soc
, vol.119
, pp. 9825-9830
-
-
Ottiger, M.1
Tjandra, N.2
Bax, A.3
-
59
-
-
0034684181
-
Measurement of proton, nitrogen, and carbonyl chemical shielding anisotropies in a protein dissolved in a dilute liquid crystalline phase
-
Cornilescu G, Bax A. 2000. Measurement of proton, nitrogen, and carbonyl chemical shielding anisotropies in a protein dissolved in a dilute liquid crystalline phase. J. Am. Chem. Soc. 122:10143-54
-
(2000)
J. Am. Chem. Soc
, vol.122
, pp. 10143-10154
-
-
Cornilescu, G.1
Bax, A.2
-
60
-
-
0034741617
-
31P chemical shift anisotropy as an aid in determining nucleic acid structure in liquid crystals
-
Wu ZR, Tjandra N, Bax A. 2001. 31P chemical shift anisotropy as an aid in determining nucleic acid structure in liquid crystals. J. Am. Chem. Soc. 123:3617-18
-
(2001)
J. Am. Chem. Soc
, vol.123
, pp. 3617-3618
-
-
Wu, Z.R.1
Tjandra, N.2
Bax, A.3
-
61
-
-
33645874517
-
Insight into the csa tensors of nucleobase carbons in rna polynucleotides from solution measurements of residualcsa: Towards new long-range orientational constraints
-
Hansen AL, Al-HashimiHM. 2006. Insight into the CSA tensors of nucleobase carbons in RNA polynucleotides from solution measurements of residualCSA: Towards new long-range orientational constraints. J. Magn. Reson. 179:299-307
-
(2006)
J. Magn. Reson
, vol.179
, pp. 299-307
-
-
Hansen, A.L.1
Al-Hashimi, H.M.2
-
62
-
-
33748360738
-
Chemical shift tensors of protonated base carbons in helical rna and dna from nmr relaxation and liquid crystal measurements
-
Ying J, Grishaev A, Bryce DL, Bax A. 2006. Chemical shift tensors of protonated base carbons in helical RNA and DNA from NMR relaxation and liquid crystal measurements. J. Am. Chem. Soc. 128:11443-54
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 11443-11454
-
-
Ying, J.1
Grishaev, A.2
Bryce, D.L.3
Bax, A.4
-
65
-
-
12744263121
-
Simultaneous determination of protein structure and dynamics
-
Lindorff-Larsen K, Best RB, DePristo MA, Dobson CM, Vendruscolo M. 2005. Simultaneous determination of protein structure and dynamics. Nature 433:128-32
-
(2005)
Nature
, vol.433
, pp. 128-132
-
-
Lindorff-Larsen, K.1
Best, R.B.2
DePristo, M.A.3
Dobson, C.M.4
Vendruscolo, M.5
-
66
-
-
33646356250
-
Detecting transient intermediates in macromolecular binding by paramagnetic NMR
-
Iwahara J, Clore GM. 2006. Detecting transient intermediates in macromolecular binding by paramagnetic NMR. Nature 440:1227-30
-
(2006)
Nature
, vol.440
, pp. 1227-1230
-
-
Iwahara, J.1
Clore, G.M.2
-
67
-
-
77953627413
-
Nmr characterization of long-range order in intrinsically disordered proteins
-
Salmon L, Nodet G, Ozenne V, Yin G, Jensen MR, et al. 2010. NMR characterization of long-range order in intrinsically disordered proteins. J. Am. Chem. Soc. 132:8407-18
-
(2010)
J. Am. Chem. Soc
, vol.132
, pp. 8407-8418
-
-
Salmon, L.1
Nodet, G.2
Ozenne, V.3
Yin, G.4
Jensen, M.R.5
-
68
-
-
0027384192
-
Conformational backbone dynamics of the cyclic decapeptide antamanide: Application of a new multiconformational search algorithm based on nmr data
-
Blackledge MJ, Bruschweiler R, Griesinger C, Schmidt JM, Xu P, Ernst RR. 1993. Conformational backbone dynamics of the cyclic decapeptide antamanide: Application of a new multiconformational search algorithm based on NMR data. Biochemistry 32:10960-74
-
(1993)
Biochemistry
, vol.32
, pp. 10960-10974
-
-
Blackledge, M.J.1
Bruschweiler, R.2
Griesinger, C.3
Schmidt, J.M.4
Xu, P.5
Ernst, R.R.6
-
69
-
-
84867232619
-
Spatial elucidation ofmotion in proteins by ensemble-based structure calculation using exact noes
-
Vögeli B, Kazemi S, Güntert P, Riek R. 2012. Spatial elucidation ofmotion in proteins by ensemble-based structure calculation using exact NOEs. Nat. Struct. Mol. Biol. 19:1053-57
-
(2012)
Nat. Struct. Mol. Biol
, vol.19
, pp. 1053-1057
-
-
Vögeli, B.1
Kazemi, S.2
Güntert, P.3
Riek, R.4
-
70
-
-
33744908076
-
Characterization of the dynamics of biomacromolecules using rotatingframe spin relaxation NMR spectroscopy
-
Palmer AG 3rd, Massi F. 2006. Characterization of the dynamics of biomacromolecules using rotatingframe spin relaxation NMR spectroscopy. Chem. Rev. 106:1700-19
-
(2006)
Chem. Rev
, vol.106
, pp. 1700-1719
-
-
Palmer III, A.G.1
Massi, F.2
-
71
-
-
84881450365
-
NMR paves the way for atomic level descriptions of sparsely populated, transiently formed biomolecular conformers
-
Sekhar A, Kay LE. 2013. NMR paves the way for atomic level descriptions of sparsely populated, transiently formed biomolecular conformers. Proc. Natl. Acad. Sci. USA 110:12867-74
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 12867-12874
-
-
Sekhar, A.1
Kay, L.E.2
-
72
-
-
79952177284
-
TransientHoogsteen base pairs in canonical duplex DNA
-
Nikolova EN, Kim E, Wise AA, O'Brien PJ, Andricioaei I, Al-HashimiHM. 2011. TransientHoogsteen base pairs in canonical duplex DNA. Nature 470:498-502
-
(2011)
Nature
, vol.470
, pp. 498-502
-
-
Nikolova, E.N.1
Kim, E.2
Wise, A.A.3
O'Brien, P.J.4
Andricioaei, I.5
Al-Hashimi, H.M.6
-
73
-
-
84870289330
-
Visualizing transient low-populated structures of RNA
-
Dethoff EA, Petzold K, Chugh J, Casiano-Negroni A, Al-Hashimi HM. 2012. Visualizing transient low-populated structures of RNA. Nature 491:724-28
-
(2012)
Nature
, vol.491
, pp. 724-728
-
-
Dethoff, E.A.1
Petzold, K.2
Chugh, J.3
Casiano-Negroni, A.4
Al-Hashimi, H.M.5
-
75
-
-
14244273876
-
In the fluorescent spotlight: Global and local conformational changes of small catalytic rnas
-
Walter NG, Harris DA, Pereira MJ, Rueda D. 2001. In the fluorescent spotlight: Global and local conformational changes of small catalytic RNAs. Biopolymers 61:224-42
-
(2001)
Biopolymers
, vol.61
, pp. 224-242
-
-
Walter, N.G.1
Harris, D.A.2
Pereira, M.J.3
Rueda, D.4
-
76
-
-
2942577733
-
Application of nmr and epr methods to the study of rna
-
Qin PZ, Dieckmann T. 2004. Application of NMR and EPR methods to the study of RNA. Curr. Opin. Struct. Biol. 14:350-59
-
(2004)
Curr. Opin. Struct. Biol
, vol.14
, pp. 350-359
-
-
Qin, P.Z.1
Dieckmann, T.2
-
77
-
-
84859757968
-
Structure and dynamics of nucleic acids
-
Krstic I, Endeward B, Margraf D, Marko A, Prisner TF. 2012. Structure and dynamics of nucleic acids. Top. Curr. Chem. 321:159-98
-
(2012)
Top. Curr. Chem
, vol.321
, pp. 159-198
-
-
Krstic, I.1
Endeward, B.2
Margraf, D.3
Marko, A.4
Prisner, T.F.5
-
78
-
-
23744470902
-
Single-molecule RNA folding
-
Bokinsky G, Zhuang X. 2005. Single-molecule RNA folding. Acc. Chem. Res. 38:566-73
-
(2005)
Acc. Chem. Res
, vol.38
, pp. 566-573
-
-
Bokinsky, G.1
Zhuang, X.2
-
80
-
-
2442571876
-
A peldor-based nanometer distance ruler for oligonucleotides
-
Schiemann O, Piton N, Mu Y, Stock G, Engels JW, Prisner TF. 2004. A PELDOR-based nanometer distance ruler for oligonucleotides. J. Am. Chem. Soc. 126:5722-29
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 5722-5729
-
-
Schiemann, O.1
Piton, N.2
Mu, Y.3
Stock, G.4
Engels, J.W.5
Prisner, T.F.6
-
81
-
-
0242669315
-
Nanometer distance measurements on rna using peldor
-
Schiemann O, Weber A, Edwards TE, Prisner TF, Sigurdsson ST. 2003. Nanometer distance measurements on RNA using PELDOR. J. Am. Chem. Soc. 125:3434-35
-
(2003)
J. Am. Chem. Soc
, vol.125
, pp. 3434-3435
-
-
Schiemann, O.1
Weber, A.2
Edwards, T.E.3
Prisner, T.F.4
Sigurdsson, S.T.5
-
82
-
-
0036384679
-
Peldor at s-And x-band frequencies and the separation of exchange coupling from dipolar coupling
-
Weber A, Schiemann O, Bode B, Prisner TF. 2002. PELDOR at S-And X-band frequencies and the separation of exchange coupling from dipolar coupling. J. Magn. Reson. 157:277-85
-
(2002)
J. Magn. Reson
, vol.157
, pp. 277-285
-
-
Weber, A.1
Schiemann, O.2
Bode, B.3
Prisner, T.F.4
-
83
-
-
76249126156
-
Multiple native states reveal persistent ruggedness of an rna folding landscape
-
Solomatin SV, Greenfeld M, Chu S, Herschlag D. 2010. Multiple native states reveal persistent ruggedness of an RNA folding landscape. Nature 463:681-84
-
(2010)
Nature
, vol.463
, pp. 681-684
-
-
Solomatin, S.V.1
Greenfeld, M.2
Chu, S.3
Herschlag, D.4
-
84
-
-
77955787630
-
Advances in rna structure analysis by chemical probing
-
Weeks KM. 2010. Advances in RNA structure analysis by chemical probing. Curr. Opin. Struct. Biol. 20:295-304
-
(2010)
Curr. Opin. Struct. Biol
, vol.20
, pp. 295-304
-
-
Weeks, K.M.1
-
85
-
-
82055176702
-
A two-dimensional mutate-And-map strategy for non-coding RNA structure
-
Kladwang W, VanLang CC, Cordero P, Das R. 2011. A two-dimensional mutate-And-map strategy for non-coding RNA structure. Nat. Chem. 3:954-62
-
(2011)
Nat. Chem
, vol.3
, pp. 954-962
-
-
Kladwang, W.1
VanLang, C.C.2
Cordero, P.3
Das, R.4
-
86
-
-
34247129655
-
Quantitative molecular ensemble interpretation of NMR dipolar couplings without restraints
-
Showalter SA, Bruschweiler R. 2007. Quantitative molecular ensemble interpretation of NMR dipolar couplings without restraints. J. Am. Chem. Soc. 129:4158-59
-
(2007)
J. Am. Chem. Soc
, vol.129
, pp. 4158-4159
-
-
Showalter, S.A.1
Bruschweiler, R.2
-
88
-
-
35948987540
-
Parameters of monovalent ions in the amber-99 forcefield: Assessment of inaccuracies and proposed improvements
-
Chen AA, Pappu RV. 2007. Parameters of monovalent ions in the AMBER-99 forcefield: Assessment of inaccuracies and proposed improvements. J. Phys. Chem. B 111:11884-87
-
(2007)
J. Phys. Chem
, vol.B111
, pp. 11884-11887
-
-
Chen, A.A.1
Pappu, R.V.2
-
90
-
-
57649130782
-
A repulsive field: Advances in the electrostatics of the ion atmosphere
-
Chu VB, Bai Y, Lipfert J, Herschlag D, Doniach S. 2008. A repulsive field: Advances in the electrostatics of the ion atmosphere. Curr. Opin. Chem. Biol. 12:619-25
-
(2008)
Curr. Opin. Chem. Biol
, vol.12
, pp. 619-625
-
-
Chu, V.B.1
Bai, Y.2
Lipfert, J.3
Herschlag, D.4
Doniach, S.5
-
91
-
-
0000437307
-
Time-dependent distance restraints in moleculardynamics simulations
-
Torda AE, Scheek RM, van Gunsteren WF. 1989. Time-dependent distance restraints in moleculardynamics simulations. Chem. Phys. Lett. 157:289-94
-
(1989)
Chem. Phys. Lett
, vol.157
, pp. 289-294
-
-
Torda, A.E.1
Scheek, R.M.2
Van Gunsteren, W.F.3
-
92
-
-
0023998438
-
Determination of three-dimensional structures of proteins by simulated annealing with interproton distance restraints: Application to crambin, potato carboxypeptidase inhibitor and barley serine proteinase inhibitor 2
-
Nilges M, Gronenborn AM, Brunger AT, Clore GM. 1988. Determination of three-dimensional structures of proteins by simulated annealing with interproton distance restraints: Application to crambin, potato carboxypeptidase inhibitor and barley serine proteinase inhibitor 2. Protein Eng. 2:27-38
-
(1988)
Protein Eng
, vol.2
, pp. 27-38
-
-
Nilges, M.1
Gronenborn, A.M.2
Brunger, A.T.3
Clore, G.M.4
-
93
-
-
0031848334
-
Solution structure of cyanovirin-N, a potent HIV-inactivating protein
-
Bewley CA, Gustafson KR, BoydMR, Covell DG, Bax A, et al. 1998. Solution structure of cyanovirin-N, a potent HIV-inactivating protein. Nat. Struct. Biol. 5:571-78
-
(1998)
Nat. Struct. Biol
, vol.5
, pp. 571-578
-
-
Bewley, C.A.1
Gustafson, K.R.2
Boyd, M.R.3
Covell, D.G.4
Bax, A.5
-
94
-
-
0032568556
-
New methods of structure refinement for macromolecular structure determination by NMR
-
Clore GM, Gronenborn AM. 1998. New methods of structure refinement for macromolecular structure determination by NMR. Proc. Natl. Acad. Sci. USA 95:5891-98
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 5891-5898
-
-
Clore, G.M.1
Gronenborn, A.M.2
-
95
-
-
45849131354
-
Recognition dynamics up to microseconds revealed from an rdc-derived ubiquitin ensemble in solution
-
Lange OF, Lakomek NA, Fares C, Schroder GF, Walter KF, et al. 2008. Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution. Science 320:1471-75
-
(2008)
Science
, vol.320
, pp. 1471-1475
-
-
Lange, O.F.1
Lakomek, N.A.2
Fares, C.3
Schroder, G.F.4
Walter, K.F.5
-
96
-
-
73249124356
-
Determination of the free energy landscape of α-synuclein using spin label nuclear magnetic resonancemeasurements
-
Allison JR, Varnai P, Dobson CM, Vendruscolo M. 2009. Determination of the free energy landscape of α-synuclein using spin label nuclear magnetic resonancemeasurements. J. Am. Chem. Soc. 131:18314-26
-
(2009)
J. Am. Chem. Soc
, vol.131
, pp. 18314-18326
-
-
Allison, J.R.1
Varnai, P.2
Dobson, C.M.3
Vendruscolo, M.4
-
97
-
-
84877018294
-
Restrained-ensemble molecular dynamics simulations based on distance histograms from double electron-electron resonance spectroscopy
-
Roux B, Islam SM. 2013. Restrained-ensemble molecular dynamics simulations based on distance histograms from double electron-electron resonance spectroscopy. J. Phys. Chem. B 117:4733-39
-
(2013)
J. Phys. Chem
, vol.B117
, pp. 4733-4739
-
-
Roux, B.1
Islam, S.M.2
-
98
-
-
84879144693
-
A method of determining rna conformational ensembles using structure-based calculations of residual dipolar couplings
-
Borkar AN, De Simone A, Montalvao RW, Vendruscolo M. 2013. A method of determining RNA conformational ensembles using structure-based calculations of residual dipolar couplings. J. Chem. Phys. 138:215103
-
(2013)
J. Chem. Phys
, vol.138
, pp. 215103
-
-
Borkar, A.N.1
De Simone, A.2
Montalvao, R.W.3
Vendruscolo, M.4
-
99
-
-
84859530115
-
Computational approaches to the interpretation of NMR data for studying protein dynamics
-
Markwick PRL, Nilges M. 2012. Computational approaches to the interpretation of NMR data for studying protein dynamics. Chem. Phys. 396:124-34
-
(2012)
Chem. Phys
, vol.396
, pp. 124-134
-
-
Markwick, P.R.L.1
Nilges, M.2
-
100
-
-
34848845491
-
Deciphering protein dynamics from NMR data using explicit structure sampling and selection
-
Chen Y, Campbell SL, Dokholyan NV. 2007. Deciphering protein dynamics from NMR data using explicit structure sampling and selection. Biophys. J. 93:2300-6
-
(2007)
Biophys. J.
, vol.93
, pp. 2300-2306
-
-
Chen, Y.1
Campbell, S.L.2
Dokholyan, N.V.3
-
101
-
-
84876030925
-
A general method for constructing atomicresolution RNA ensembles using NMR residual dipolar couplings: The basis for interhelical motions revealed
-
Salmon L, Bascom G, Andricioaei I, Al-Hashimi HM. 2013. A general method for constructing atomicresolution RNA ensembles using NMR residual dipolar couplings: The basis for interhelical motions revealed. J. Am. Chem. Soc. 135:5457-66
-
(2013)
J. Am. Chem. Soc
, vol.135
, pp. 5457-5466
-
-
Salmon, L.1
Bascom, G.2
Andricioaei, I.3
Al-Hashimi, H.M.4
-
102
-
-
67649891135
-
Constructingrnadynamical ensembles by combining md and motionally decoupled nmr rdcs: New insights into rna dynamics and adaptive ligand recognition
-
Frank AT, Stelzer AC, Al-HashimiHM, Andricioaei I. 2009. ConstructingRNAdynamical ensembles by combining MD and motionally decoupled NMR RDCs: New insights into RNA dynamics and adaptive ligand recognition. Nucleic Acids Res. 37:3670-79
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 3670-3679
-
-
Frank, A.T.1
Stelzer, A.C.2
Al-Hashimi, H.M.3
Andricioaei, I.4
-
103
-
-
84863405959
-
Unraveling the structural complexity in a single-stranded RNA tail: Implications for efficient ligand binding in the prequeuosine riboswitch
-
Eichhorn CD, Feng J, Suddala KC, Walter NG, Brooks CL 3rd, Al-Hashimi HM. 2012. Unraveling the structural complexity in a single-stranded RNA tail: Implications for efficient ligand binding in the prequeuosine riboswitch. Nucleic Acids Res. 40:1345-55
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 1345-1355
-
-
Eichhorn, C.D.1
Feng, J.2
Suddala, K.C.3
Walter, N.G.4
Brooks III, C.L.5
Al-Hashimi, H.M.6
-
104
-
-
51949119253
-
Critical assessment of nucleic acid electrostatics via experimental and computational investigation of an unfolded state ensemble
-
Bai Y, Chu VB, Lipfert J, Pande VS, Herschlag D, Doniach S. 2008. Critical assessment of nucleic acid electrostatics via experimental and computational investigation of an unfolded state ensemble. J. Am. Chem. Soc. 130:12334-41
-
(2008)
J. Am. Chem. Soc
, vol.130
, pp. 12334-12341
-
-
Bai, Y.1
Chu, V.B.2
Lipfert, J.3
Pande, V.S.4
Herschlag, D.5
Doniach, S.6
-
105
-
-
84874867093
-
Mapping the population of protein conformational energy sub-states from NMR dipolar couplings
-
Guerry P, Salmon L, Mollica L, Ortega-Roldan J-L, Markwick P, et al. 2013. Mapping the population of protein conformational energy sub-states from NMR dipolar couplings. Angew. Chem. Int. Ed. Engl. 52:3181-85
-
(2013)
Angew. Chem. Int. Ed. Engl
, vol.52
, pp. 3181-3185
-
-
Guerry, P.1
Salmon, L.2
Mollica, L.3
Ortega-Roldan, J.-L.4
Markwick, P.5
-
106
-
-
71749087100
-
Quantitative description of backbone conformational sampling of unfolded proteins at amino acid resolution from NMR residual dipolar couplings
-
Nodet G, Salmon L, Ozenne V, Meier S, Jensen MR, Blackledge M. 2009. Quantitative description of backbone conformational sampling of unfolded proteins at amino acid resolution from NMR residual dipolar couplings. J. Am. Chem. Soc. 131:17908-18
-
(2009)
J. Am. Chem. Soc
, vol.131
, pp. 17908-17918
-
-
Nodet, G.1
Salmon, L.2
Ozenne, V.3
Meier, S.4
Jensen, M.R.5
Blackledge, M.6
-
107
-
-
70450237199
-
Toward a unified representation of protein structural dynamics in solution
-
Markwick PRL, Bouvignies G, Salmon L, McCammon JA, Nilges M, Blackledge M. 2009. Toward a unified representation of protein structural dynamics in solution. J. Am. Chem. Soc. 131:16968-75
-
(2009)
J. Am. Chem. Soc
, vol.131
, pp. 16968-16975
-
-
Markwick, P.R.L.1
Bouvignies, G.2
Salmon, L.3
McCammon, J.A.4
Nilges, M.5
Blackledge, M.6
-
108
-
-
84862676450
-
Multi-Timescale conformational dynamics of the SH3 domain of CD2-Associated protein usingNMRspectroscopy and accelerated molecular dynamics
-
Salmon L, Pierce L, Grimm A, Ortega-Roldan J-L, Mollica L, et al. 2012. Multi-Timescale conformational dynamics of the SH3 domain of CD2-Associated protein usingNMRspectroscopy and accelerated molecular dynamics. Angew. Chem. Int. Ed. Engl. 51:6103-6
-
(2012)
Angew. Chem. Int. Ed. Engl
, vol.51
, pp. 6103-6106
-
-
Salmon, L.1
Pierce, L.2
Grimm, A.3
Ortega-Roldan, J.-L.4
Mollica, L.5
-
109
-
-
84884282981
-
Mapping protein conformational energy landscapes using NMR and molecular simulation
-
Guerry P, Mollica L, Blackledge M. 2013. Mapping protein conformational energy landscapes using NMR and molecular simulation. Chemphyschem 14:3046-58
-
(2013)
Chemphyschem
, vol.14
, pp. 3046-3058
-
-
Guerry, P.1
Mollica, L.2
Blackledge, M.3
-
110
-
-
84876837158
-
Characterization of the free-energy landscapes of proteins by NMR-guided metadynamics
-
Granata D, Camilloni C, Vendruscolo M, Laio A. 2013. Characterization of the free-energy landscapes of proteins by NMR-guided metadynamics. Proc. Natl. Acad. Sci. USA 110:6817-22
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 6817-6822
-
-
Granata, D.1
Camilloni, C.2
Vendruscolo, M.3
Laio, A.4
-
112
-
-
70349287508
-
Constructing atomic-resolution rna structural ensembles using md and motionally decoupled nmr rdcs
-
StelzerAC, FrankAT, BailorMH, Andricioaei I, Al-HashimiHM. 2009. Constructing atomic-resolution RNA structural ensembles using MD and motionally decoupled NMR RDCs. Methods 49:167-73
-
(2009)
Methods
, vol.49
, pp. 167-173
-
-
Stelzer, A.C.1
Frank, A.T.2
Bailor, M.H.3
Andricioaei, I.4
Al-Hashimi, H.M.5
-
113
-
-
77957114696
-
Conformational space of flexible biological macromolecules from average data
-
Bertini I, Giachetti A, LuchinatC, ParigiG, PetoukhovMV, et al. 2010. Conformational space of flexible biological macromolecules from average data. J. Am. Chem. Soc. 132:13553-58
-
(2010)
J. Am. Chem. Soc
, vol.132
, pp. 13553-13558
-
-
Bertini, I.1
Giachetti, A.2
Luchinat, C.3
Parigi, G.4
Petoukhov, M.V.5
-
114
-
-
77958510026
-
Modeling intrinsically disordered proteins with Bayesian statistics
-
Fisher CK, Huang A, Stultz CM. 2010. Modeling intrinsically disordered proteins with Bayesian statistics. J. Am. Chem. Soc. 132:14919-27
-
(2010)
J. Am. Chem. Soc
, vol.132
, pp. 14919-14927
-
-
Fisher, C.K.1
Huang, A.2
Stultz, C.M.3
-
115
-
-
0032879507
-
R-factor, free R, and complete cross-validation for dipolar coupling refinement of NMR structures
-
Clore GM, Garrett DS. 1999. R-factor, free R, and complete cross-validation for dipolar coupling refinement of NMR structures. J. Am. Chem. Soc. 121:9008-12
-
(1999)
J. Am. Chem. Soc
, vol.121
, pp. 9008-9012
-
-
Clore, G.M.1
Garrett, D.S.2
-
116
-
-
3042846748
-
Determination of protein structures consistent with NMR order parameters
-
Best RB, Vendruscolo M. 2004. Determination of protein structures consistent with NMR order parameters. J. Am. Chem. Soc. 126:8090-91
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 8090-8091
-
-
Best, R.B.1
Vendruscolo, M.2
-
117
-
-
67849133810
-
Toward an accurate determination of free energy landscapes in solution states of proteins
-
De Simone A, Richter B, Salvatella X, Vendruscolo M. 2009. Toward an accurate determination of free energy landscapes in solution states of proteins. J. Am. Chem. Soc. 131:3810-11
-
(2009)
J. Am. Chem. Soc
, vol.131
, pp. 3810-3811
-
-
De Simone, A.1
Richter, B.2
Salvatella, X.3
Vendruscolo, M.4
-
118
-
-
33846532929
-
The mumo (minimal underrestrainingminimal over-restraining) method for the determination of native state ensembles of proteins
-
Richter B, Gsponer J, Várnai P, Salvatella X, Vendruscolo M. 2007. The MUMO (minimal underrestrainingminimal over-restraining) method for the determination of native state ensembles of proteins. J. Biomol. NMR 37:117-35
-
(2007)
J. Biomol. NMR
, vol.37
, pp. 117-135
-
-
Richter, B.1
Gsponer, J.2
Várnai, P.3
Salvatella, X.4
Vendruscolo, M.5
-
119
-
-
33645988196
-
From sample similarity to ensemble similarity: Probabilistic distance measures in reproducing kernel Hilbert space
-
Zhou SK, Chellappa R. 2006. From sample similarity to ensemble similarity: Probabilistic distance measures in reproducing kernel Hilbert space. IEEE Trans. Pattern Anal. Mach. Intell. 28:917-29
-
(2006)
IEEE Trans Pattern Anal. Mach. Intell
, vol.28
, pp. 917-929
-
-
Zhou, S.K.1
Chellappa, R.2
-
120
-
-
20444478991
-
Riboswitches as versatile gene control elements
-
Tucker BJ, Breaker RR. 2005. Riboswitches as versatile gene control elements. Curr. Opin. Struct. Biol. 15:342-48
-
(2005)
Curr. Opin. Struct. Biol
, vol.15
, pp. 342-348
-
-
Tucker, B.J.1
Breaker, R.R.2
-
121
-
-
77954627025
-
Free state conformational sampling of the SAM-I riboswitch aptamer domain
-
Stoddard CD, Montange RK, Hennelly SP, Rambo RP, Sanbonmatsu KY, Batey RT. 2010. Free state conformational sampling of the SAM-I riboswitch aptamer domain. Structure 18:787-97
-
(2010)
Structure
, vol.18
, pp. 787-797
-
-
Stoddard, C.D.1
Montange, R.K.2
Hennelly, S.P.3
Rambo, R.P.4
Sanbonmatsu, K.Y.5
Batey, R.T.6
-
122
-
-
3543012707
-
Crystallographysystem: A new software suite for macromolecular structure determination
-
Brunger AT, Adams PD, CloreGM, DeLano WL, Gros P, et al. 1998. Crystallographysystem: A new software suite for macromolecular structure determination. Acta Crystallogr. D 54:905-21
-
(1998)
Acta Crystallogr
, vol.D54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
-
123
-
-
74249115345
-
Topology links rna secondary structure with global conformation, dynamics, and adaptation
-
Bailor MH, Sun X, Al-Hashimi HM. 2010. Topology links RNA secondary structure with global conformation, dynamics, and adaptation. Science 327:202-6
-
(2010)
Science
, vol.327
, pp. 202-206
-
-
Bailor, M.H.1
Sun, X.2
Al-Hashimi, H.M.3
-
124
-
-
73249135897
-
Do conformational biases of simple helical junctions influence RNA folding stability and specificity
-
Chu VB, Lipfert J, Bai Y, Pande VS, Doniach S, Herschlag D 2009. Do conformational biases of simple helical junctions influence RNA folding stability and specificity? RNA 15:2195-205
-
(2009)
RNA
, vol.15
, pp. 2195-2205
-
-
Chu, V.B.1
Lipfert, J.2
Bai, Y.3
Pande, V.S.4
Doniach, S.5
Herschlag, D.6
-
125
-
-
84855902184
-
New insights into the fundamental role of topological constraints as a determinant of two-way junction conformation
-
Mustoe AM, Bailor MH, Teixeira RM, Brooks CL 3rd, Al-Hashimi HM. 2012. New insights into the fundamental role of topological constraints as a determinant of two-way junction conformation. Nucleic Acids Res. 40:892-904
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 892-904
-
-
Mustoe, A.M.1
Bailor, M.H.2
Teixeira, R.M.3
Brooks III, C.L.4
Al-Hashimi, H.M.5
-
126
-
-
79958069365
-
Topological constraints: Using rna secondary structure to model 3d conformation, folding pathways, and dynamic adaptation
-
Bailor MH, Mustoe AM, Brooks CL 3rd, Al-Hashimi HM. 2011. Topological constraints: Using RNA secondary structure to model 3D conformation, folding pathways, and dynamic adaptation. Curr. Opin. Struct. Biol. 21:296-305
-
(2011)
Curr. Opin. Struct. Biol
, vol.21
, pp. 296-305
-
-
Bailor, M.H.1
Mustoe, A.M.2
Brooks III, C.L.3
Al-Hashimi, H.M.4
-
127
-
-
0242593434
-
Development and current status of the charmm force field for nucleic acids
-
MacKerell AD, Banavali N, Foloppe N. 2000. Development and current status of the CHARMM force field for nucleic acids. Biopolymers 56:257-65
-
(2000)
Biopolymers
, vol.56
, pp. 257-265
-
-
MacKerell, A.D.1
Banavali, N.2
Foloppe, N.3
-
128
-
-
79960562804
-
Discovery of selective bioactive small molecules by targeting an RNA dynamic ensemble
-
Stelzer AC, Frank AT, Kratz JD, Swanson MD, Gonzalez-Hernandez MJ, et al. 2011. Discovery of selective bioactive small molecules by targeting an RNA dynamic ensemble. Nat. Chem. Biol. 7:553-59
-
(2011)
Nat. Chem. Biol
, vol.7
, pp. 553-559
-
-
Stelzer, A.C.1
Frank, A.T.2
Kratz, J.D.3
Swanson, M.D.4
Gonzalez-Hernandez, M.J.5
-
129
-
-
46249090563
-
Anton, a special-purposemachine for molecular dynamics simulation
-
ACM
-
ShawDE, DeneroffMM, Dror RO, Kuskin JS, Larson RH, et al. 2008. Anton, a special-purposemachine for molecular dynamics simulation. Commun. ACM 51:91-97
-
(2008)
Commun
, vol.51
, pp. 91-97
-
-
Shaw, D.E.1
Deneroff, M.M.2
Dror, R.O.3
Kuskin, J.S.4
Larson, R.H.5
-
130
-
-
79955484353
-
Impact of 2-hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all-Atom additive force field for RNA
-
Denning EJ, Priyakumar UD, Nilsson L, Mackerell AD Jr. 2011. Impact of 2-hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all-Atom additive force field for RNA. J. Comput. Chem. 32:1929-43
-
(2011)
J. Comput. Chem
, vol.32
, pp. 1929-1943
-
-
Denning, E.J.1
Priyakumar, U.D.2
Nilsson, L.3
Mackerell Jr., A.D.4
-
131
-
-
0348244547
-
All-Atom empirical force field for nucleic acids I Parameter optimization based on small molecule and condensed phase macromolecular target data
-
Foloppe N, MacKerell AD Jr. 2000. All-Atom empirical force field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data. J. Comput. Chem. 21:86-104
-
(2000)
J. Comput. Chem
, vol.21
, pp. 86-104
-
-
Foloppe, N.1
MacKerell Jr., A.D.2
|