메뉴 건너뛰기




Volumn 55, Issue 1, 2013, Pages 33-46

Database proton NMR chemical shifts for RNA signal assignment and validation

Author keywords

A form helices; Chemical shift; NMR signal assignment and validation; RNA

Indexed keywords

RNA;

EID: 84873058309     PISSN: 09252738     EISSN: 15735001     Source Type: Journal    
DOI: 10.1007/s10858-012-9683-9     Document Type: Article
Times cited : (47)

References (77)
  • 1
    • 84861559026 scopus 로고    scopus 로고
    • A procedure to validate and correct the 13C chemical shift calibration of RNA datasets
    • 10.1007/s10858-011-9600-7
    • Aeschbacher T, Schubert M, Allain FH (2012) A procedure to validate and correct the 13C chemical shift calibration of RNA datasets. J Biomol NMR 52:179-190
    • (2012) J Biomol NMR , vol.52 , pp. 179-190
    • Aeschbacher, T.1    Schubert, M.2    Allain, F.H.3
  • 2
    • 0031588925 scopus 로고    scopus 로고
    • How accurately and precisely can RNA structure be determined by NMR?
    • 10.1006/jmbi.1996.0855
    • Allain FH-T, Varani G (1997) How accurately and precisely can RNA structure be determined by NMR? J Mol Biol 267:338-351
    • (1997) J Mol Biol , vol.267 , pp. 338-351
    • Allain, F.-T.1    Varani, G.2
  • 4
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • 10.1016/S0092-8674(04)00045-5
    • Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116:281-297
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 5
    • 0026744912 scopus 로고
    • Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA
    • 10.1093/nar/20.17.4515
    • Batey RT, Inada M, Kujawinski E, Puglisi JD, Williamson JR (1992) Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA. Nucleic Acids Res 20:4515-4523
    • (1992) Nucleic Acids Res , vol.20 , pp. 4515-4523
    • Batey, R.T.1    Inada, M.2    Kujawinski, E.3    Puglisi, J.D.4    Williamson, J.R.5
  • 6
    • 0028803380 scopus 로고
    • Preparation of isotopically enriched RNAs for heteronuclear NMR
    • 10.1016/S0076-6879(95)61015-4
    • Batey RT, Battiste JL, Williamson JR (1995) Preparation of isotopically enriched RNAs for heteronuclear NMR. Methods Enzymol 261:300-322
    • (1995) Methods Enzymol , vol.261 , pp. 300-322
    • Batey, R.T.1    Battiste, J.L.2    Williamson, J.R.3
  • 7
    • 42249093677 scopus 로고    scopus 로고
    • Isolation of an active step i spliceosome and composition of its RNP core
    • 2008Natur.452.846B 10.1038/nature06842
    • Bessonov S, Anokhina M, Will CL, Urlaub H, Luhrmann R (2008) Isolation of an active step I spliceosome and composition of its RNP core. Nature 452:846-850
    • (2008) Nature , vol.452 , pp. 846-850
    • Bessonov, S.1    Anokhina, M.2    Will, C.L.3    Urlaub, H.4    Luhrmann, R.5
  • 9
    • 33646137364 scopus 로고    scopus 로고
    • The diversity of RNA silencing pathways in plants
    • 10.1016/j.tig.2006.03.003
    • Brodersen P, Voinnet O (2006) The diversity of RNA silencing pathways in plants. Trends Genet 22:268-280
    • (2006) Trends Genet , vol.22 , pp. 268-280
    • Brodersen, P.1    Voinnet, O.2
  • 11
    • 0029437665 scopus 로고
    • Calibration of ring-current effects in proteins and nucleic acids
    • 10.1007/BF00197633
    • Case DA (1995) Calibration of ring-current effects in proteins and nucleic acids. J Biomol NMR 6:341-346
    • (1995) J Biomol NMR , vol.6 , pp. 341-346
    • Case, D.A.1
  • 12
    • 0004195760 scopus 로고    scopus 로고
    • University of California San Francisco
    • Case DA (2002) AMBER 7 users manual. University of California San Francisco
    • (2002) AMBER 7 Users Manual
    • Case, D.A.1
  • 14
    • 34547455182 scopus 로고    scopus 로고
    • Protein structure determination from NMR chemical shifts
    • 2007PNAS.104.9615C 10.1073/pnas.0610313104
    • Cavalli A, Salvatella X, Dobson CM, Vendruscolo M (2007) Protein structure determination from NMR chemical shifts. Proc Natl Acad Sci USA 104:9615-9620
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 9615-9620
    • Cavalli, A.1    Salvatella, X.2    Dobson, C.M.3    Vendruscolo, M.4
  • 15
    • 24644473489 scopus 로고    scopus 로고
    • A loop 2 cytidine-stem 1 minor groove interaction as a positive determinant for pseudoknot-stimulated -1 ribosomal frameshifting
    • 2005PNAS.10212694C 10.1073/pnas.0506166102
    • Cornish PV, Hennig M, Giedroc DP (2005) A loop 2 cytidine-stem 1 minor groove interaction as a positive determinant for pseudoknot-stimulated -1 ribosomal frameshifting. Proc Natl Acad Sci USA 102:12694-12699
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 12694-12699
    • Cornish, P.V.1    Hennig, M.2    Giedroc, D.P.3
  • 16
    • 0034786589 scopus 로고    scopus 로고
    • Prediction of proton chemical shifts in RNA. Their use in structure refinement and validation
    • 10.1023/A:1011914132531
    • Cromsigt JAMTC, Hilbers CW, Wijmenga SS (2001) Prediction of proton chemical shifts in RNA. Their use in structure refinement and validation. J Biomol NMR 21:11-29
    • (2001) J Biomol NMR , vol.21 , pp. 11-29
    • Cromsigt, J.1    Hilbers, C.W.2    Wijmenga, S.S.3
  • 17
    • 22444437410 scopus 로고    scopus 로고
    • RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex
    • 10.1016/j.jmb.2005.05.069
    • Davis JH, Tonelli M, Scott LG, Jaeger L, Williamson JR, Butcher SE (2005) RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex. J Mol Biol 351:371-382
    • (2005) J Mol Biol , vol.351 , pp. 371-382
    • Davis, J.H.1    Tonelli, M.2    Scott, L.G.3    Jaeger, L.4    Williamson, J.R.5    Butcher, S.E.6
  • 18
    • 0042597320 scopus 로고    scopus 로고
    • An empirical analysis of proton chemical shifts in nucleic acids
    • Facelli J et al (eds) American Chemical Society, Washington, DC
    • Dejaegere A, Bryce RA, Case DA (1999) An empirical analysis of proton chemical shifts in nucleic acids, In: Facelli J et al (eds) ACS symposium series: modeling NMR chemical shifts. American Chemical Society, Washington, DC, pp 194-206
    • (1999) ACS Symposium Series: Modeling NMR Chemical Shifts , pp. 194-206
    • Dejaegere, A.1    Bryce, R.A.2    Case, D.A.3
  • 19
    • 0037133957 scopus 로고    scopus 로고
    • Structure and function of the eukaryotic ribosome: The next frontier
    • 10.1016/S0092-8674(02)00725-0
    • Doudna JA, Rath VL (2002) Structure and function of the eukaryotic ribosome: the next frontier. Cell 109:153-156
    • (2002) Cell , vol.109 , pp. 153-156
    • Doudna, J.A.1    Rath, V.L.2
  • 20
    • 4944256277 scopus 로고    scopus 로고
    • Structural basis for packaging the dimeric genome of Moloney Murine Leukaemia Virus
    • 2004Natur.431.586D 10.1038/nature02944
    • D'Souza V, Summers MF (2004) Structural basis for packaging the dimeric genome of Moloney Murine Leukaemia Virus. Nature 431:586-590
    • (2004) Nature , vol.431 , pp. 586-590
    • D'Souza, V.1    Summers, M.F.2
  • 21
    • 1442286437 scopus 로고    scopus 로고
    • NMR structure of the 101 nucleotide core encapsidation signal of the Moloney Murine Leukemia Virus
    • 10.1016/j.jmb.2004.01.037
    • D'Souza V, Dey A, Habib D, Summers MF (2004) NMR structure of the 101 nucleotide core encapsidation signal of the Moloney Murine Leukemia Virus. J Mol Biol 337:427-442
    • (2004) J Mol Biol , vol.337 , pp. 427-442
    • D'Souza, V.1    Dey, A.2    Habib, D.3    Summers, M.F.4
  • 22
    • 84870474718 scopus 로고    scopus 로고
    • Isotope labeling and segmental labeling of larger RNAs for NMR structural studies
    • 10.1007/978-94-007-4954-2-7
    • Duss O, Lukavsky PJ, Allain FH (2012) Isotope labeling and segmental labeling of larger RNAs for NMR structural studies. Adv Exp Med Biol 992:121-144
    • (2012) Adv Exp Med Biol , vol.992 , pp. 121-144
    • Duss, O.1    Lukavsky, P.J.2    Allain, F.H.3
  • 23
    • 0035542622 scopus 로고    scopus 로고
    • Dependence of 13C NMR chemical shifts on conformations of RNA nucleosides and nucleotides
    • 2001JMagR.150.1E 10.1006/jmre.2001.2314
    • Ebrahimi M, Rossi P, Rogers C, Harbison GS (2001) Dependence of 13C NMR chemical shifts on conformations of RNA nucleosides and nucleotides. J Magn Reson 150:1-9
    • (2001) J Magn Reson , vol.150 , pp. 1-9
    • Ebrahimi, M.1    Rossi, P.2    Rogers, C.3    Harbison, G.S.4
  • 24
    • 34347401399 scopus 로고    scopus 로고
    • Riboswitches: Small-molecule recognition by gene regulatory RNAs
    • 10.1016/j.sbi.2007.05.004
    • Edwards TE, Klein DJ, Ferre-D'Amare AR (2007) Riboswitches: small-molecule recognition by gene regulatory RNAs. Curr Opin Struct Biol 17:273-279
    • (2007) Curr Opin Struct Biol , vol.17 , pp. 273-279
    • Edwards, T.E.1    Klein, D.J.2    Ferre-D'Amare, A.R.3
  • 26
    • 37549037516 scopus 로고    scopus 로고
    • 13C-detection in RNA bases: Revealing structure-chemical shift relationships
    • 10.1021/ja0727417
    • Fares C, Amata I, Carlomagno T (2007) 13C-detection in RNA bases: revealing structure-chemical shift relationships. J Am Chem Soc 129:15814-15823
    • (2007) J Am Chem Soc , vol.129 , pp. 15814-15823
    • Fares, C.1    Amata, I.2    Carlomagno, T.3
  • 27
    • 77950841483 scopus 로고    scopus 로고
    • Metal ion-based RNA cleavage as a structural probe
    • 10.1016/S0076-6879(09)68005-8
    • Forconi M, Herschlag D (2009) Metal ion-based RNA cleavage as a structural probe. Methods Enzymol 468:91-106
    • (2009) Methods Enzymol , vol.468 , pp. 91-106
    • Forconi, M.1    Herschlag, D.2
  • 28
    • 0034613196 scopus 로고    scopus 로고
    • Structure of free Thermus flavus 5 S rRNA at 1.3 nm resolution from synchrotron X-ray solution scattering
    • 10.1074/jbc.M004974200
    • Funari SS, Rapp G, Perbandt M, Dierks K, Vallazza M, Betzel C, Erdmann VA, Svergun DI (2000) Structure of free Thermus flavus 5 S rRNA at 1.3 nm resolution from synchrotron X-ray solution scattering. J Biol Chem 275:31283-31288
    • (2000) J Biol Chem , vol.275 , pp. 31283-31288
    • Funari, S.S.1    Rapp, G.2    Perbandt, M.3    Dierks, K.4    Vallazza, M.5    Betzel, C.6    Erdmann, V.A.7    Svergun, D.I.8
  • 29
    • 54049155019 scopus 로고    scopus 로고
    • Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data
    • 10.1007/s10858-008-9267-x
    • Grishaev A, Ying J, Canny MD, Pardi A, Bax A (2008) Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data. J Biomol NMR 42:99-109
    • (2008) J Biomol NMR , vol.42 , pp. 99-109
    • Grishaev, A.1    Ying, J.2    Canny, M.D.3    Pardi, A.4    Bax, A.5
  • 31
    • 0021770476 scopus 로고
    • The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes
    • 10.1093/nar/12.8.3563
    • Hassouna N, Michot B, Bachellerie JP (1984) The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes. Nucleic Acids Res 12:3563-3583
    • (1984) Nucleic Acids Res , vol.12 , pp. 3563-3583
    • Hassouna, N.1    Michot, B.2    Bachellerie, J.P.3
  • 34
    • 4644259437 scopus 로고    scopus 로고
    • Using NMRView to visualize and analyze the NMR spectra of macromolecules
    • Johnson BA (2004) Using NMRView to visualize and analyze the NMR spectra of macromolecules. Methods Mol Biol 278:313-352
    • (2004) Methods Mol Biol , vol.278 , pp. 313-352
    • Johnson, B.A.1
  • 35
    • 34249765651 scopus 로고
    • NMRview: A computer program for the visualization and analysis of NMR data
    • 10.1007/BF00404272
    • Johnson BA, Blevins RA (1994) NMRview: a computer program for the visualization and analysis of NMR data. J Biomol NMR 4:603-614
    • (1994) J Biomol NMR , vol.4 , pp. 603-614
    • Johnson, B.A.1    Blevins, R.A.2
  • 36
    • 18344373363 scopus 로고    scopus 로고
    • Small RNAs: Classification, biogenesis, and function
    • 10.1016/j.molcel.2005.05.026
    • Kim VN (2005) Small RNAs: classification, biogenesis, and function. Mol Cells 19:1-15
    • (2005) Mol Cells , vol.19 , pp. 1-15
    • Kim, V.N.1
  • 38
    • 0037077562 scopus 로고    scopus 로고
    • NMR study of 100 kDa HCV IRES RNA using segmental isotope labeling
    • 10.1021/ja026647w
    • Kim I, Lukavsky PJ, Puglisi JD (2002) NMR study of 100 kDa HCV IRES RNA using segmental isotope labeling. J Am Chem Soc 124:9338-9339
    • (2002) J Am Chem Soc , vol.124 , pp. 9338-9339
    • Kim, I.1    Lukavsky, P.J.2    Puglisi, J.D.3
  • 39
    • 80052729501 scopus 로고    scopus 로고
    • Understanding the errors of SHAPE-directed RNA structure modeling
    • 10.1021/bi200524n
    • Kladwang W, Vanlang CC, Cordero P, Das R (2011) Understanding the errors of SHAPE-directed RNA structure modeling. Biochemistry 50:8049-8056
    • (2011) Biochemistry , vol.50 , pp. 8049-8056
    • Kladwang, W.1    Vanlang, C.C.2    Cordero, P.3    Das, R.4
  • 40
    • 34548395468 scopus 로고    scopus 로고
    • The ribosome in focus: New structures bring new insights
    • 10.1016/j.tibs.2007.08.002
    • Korostelev A, Noller HF (2007) The ribosome in focus: new structures bring new insights. Trends Biochem Sci 32:434-441
    • (2007) Trends Biochem Sci , vol.32 , pp. 434-441
    • Korostelev, A.1    Noller, H.F.2
  • 41
    • 77949541339 scopus 로고    scopus 로고
    • Use of chemical shifts for structural studies of nucleic acids
    • 10.1016/j.pnmrs.2010.01.002
    • Lam SL, Chi LM (2010) Use of chemical shifts for structural studies of nucleic acids. Prog Nucl Magn Reson Spectrosc 56:289-310
    • (2010) Prog Nucl Magn Reson Spectrosc , vol.56 , pp. 289-310
    • Lam, S.L.1    Chi, L.M.2
  • 42
    • 77149144527 scopus 로고    scopus 로고
    • Isotope labeling strategies for NMR studies of RNA
    • 10.1007/s10858-009-9375-2
    • Lu K, Miyazaki Y, Summers MF (2009) Isotope labeling strategies for NMR studies of RNA. J Biomol NMR 46:113-125
    • (2009) J Biomol NMR , vol.46 , pp. 113-125
    • Lu, K.1    Miyazaki, Y.2    Summers, M.F.3
  • 44
    • 80051766524 scopus 로고    scopus 로고
    • Structural determinants and mechanism of HIV-1 genome packaging
    • 10.1016/j.jmb.2011.04.029
    • Lu K, Heng X, Summers MF (2011b) Structural determinants and mechanism of HIV-1 genome packaging. J Mol Biol 410:609-633
    • (2011) J Mol Biol , vol.410 , pp. 609-633
    • Lu, K.1    Heng, X.2    Summers, M.F.3
  • 45
    • 16244371290 scopus 로고    scopus 로고
    • Structure determination of large biological RNAs
    • 10.1016/S0076-6879(05)94016-0
    • Lukavsky PJ, Puglisi JD (2005) Structure determination of large biological RNAs. Methods Enzymol 394:399-415
    • (2005) Methods Enzymol , vol.394 , pp. 399-415
    • Lukavsky, P.J.1    Puglisi, J.D.2
  • 46
    • 0344628782 scopus 로고    scopus 로고
    • Structure of HCV IRES domain II determined by NMR
    • 10.1038/nsb1004
    • Lukavsky PJ, Kim I, Otto GA, Puglisi JD (2003) Structure of HCV IRES domain II determined by NMR. Nat Struct Biol 10:1033-1038
    • (2003) Nat Struct Biol , vol.10 , pp. 1033-1038
    • Lukavsky, P.J.1    Kim, I.2    Otto, G.A.3    Puglisi, J.D.4
  • 47
    • 0027529636 scopus 로고
    • Selective isotopic enrichment of synthetic RNA: Application to the HIV-1 TAR element
    • 10.1021/bi00053a002
    • Michnicka MJ, Harper JW, King GC (1993) Selective isotopic enrichment of synthetic RNA: application to the HIV-1 TAR element. Biochemistry 32:395-400
    • (1993) Biochemistry , vol.32 , pp. 395-400
    • Michnicka, M.J.1    Harper, J.W.2    King, G.C.3
  • 50
    • 0026565488 scopus 로고
    • Three-dimensional heteronuclear NMR studies of RNA
    • 1992Natur.355.184N 10.1038/355184a0
    • Nikonowicz EP, Pardi A (1992) Three-dimensional heteronuclear NMR studies of RNA. Nature 355:184-186
    • (1992) Nature , vol.355 , pp. 184-186
    • Nikonowicz, E.P.1    Pardi, A.2
  • 52
    • 54049099506 scopus 로고    scopus 로고
    • Conformational signatures of 13C chemical shifts in RNA ribose
    • 10.1007/s10858-008-9271-1
    • Ohlenschlager O, Haumann S, Ramachandran R, Gorlach M (2008) Conformational signatures of 13C chemical shifts in RNA ribose. J Biomol NMR 42:139-142
    • (2008) J Biomol NMR , vol.42 , pp. 139-142
    • Ohlenschlager, O.1    Haumann, S.2    Ramachandran, R.3    Gorlach, M.4
  • 54
    • 0019051754 scopus 로고
    • Chemical probes for higher-order structure in RNA
    • 1980PNAS.77.4679P 10.1073/pnas.77.8.4679
    • Peattie DA, Gilbert W (1980) Chemical probes for higher-order structure in RNA. Proc Natl Acad Sci USA 77:4679-4682
    • (1980) Proc Natl Acad Sci USA , vol.77 , pp. 4679-4682
    • Peattie, D.A.1    Gilbert, W.2
  • 55
    • 1242340502 scopus 로고    scopus 로고
    • New applications of 2D filtered/edited NOESY for assignment and structure elucidation of RNA and RNA-protein complexes
    • 10.1023/B:JNMR.0000012861.95939.05
    • Peterson RD, Theimer CA, Wu H, Feigon J (2004) New applications of 2D filtered/edited NOESY for assignment and structure elucidation of RNA and RNA-protein complexes. J Biomol NMR 28:59-67
    • (2004) J Biomol NMR , vol.28 , pp. 59-67
    • Peterson, R.D.1    Theimer, C.A.2    Wu, H.3    Feigon, J.4
  • 56
    • 60149099385 scopus 로고    scopus 로고
    • Evolution and functions of long noncoding RNAs
    • 10.1016/j.cell.2009.02.006
    • Ponting CP, Oliver PL, Reik W (2009) Evolution and functions of long noncoding RNAs. Cell 136:629-641
    • (2009) Cell , vol.136 , pp. 629-641
    • Ponting, C.P.1    Oliver, P.L.2    Reik, W.3
  • 59
    • 39749138785 scopus 로고    scopus 로고
    • A structural understanding of the dynamic ribosome machine
    • 10.1038/nrm2352
    • Steitz TA (2008) A structural understanding of the dynamic ribosome machine. Nat Rev Mol Cell Biol 9:242-253
    • (2008) Nat Rev Mol Cell Biol , vol.9 , pp. 242-253
    • Steitz, T.A.1
  • 60
    • 0024241761 scopus 로고
    • Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension
    • 10.1016/S0076-6879(88)64064-X
    • Stern S, Moazed D, Noller HF (1988) Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension. Methods Enzymol 164:481-489
    • (1988) Methods Enzymol , vol.164 , pp. 481-489
    • Stern, S.1    Moazed, D.2    Noller, H.F.3
  • 61
    • 77954758058 scopus 로고    scopus 로고
    • Major groove width variations in RNA structures determined by NMR and impact of 13C residual chemical shift anisotropy and 1H-13C residual dipolar coupling on refinement
    • 10.1007/s10858-010-9424-x
    • Tolbert BS, Miyazaki Y, Barton S, Kinde B, Starck P, Singh R, Bax A, Case DA, Summers MF (2010) Major groove width variations in RNA structures determined by NMR and impact of 13C residual chemical shift anisotropy and 1H-13C residual dipolar coupling on refinement. J Biomol NMR 47:205-219
    • (2010) J Biomol NMR , vol.47 , pp. 205-219
    • Tolbert, B.S.1    Miyazaki, Y.2    Barton, S.3    Kinde, B.4    Starck, P.5    Singh, R.6    Bax, A.7    Case, D.A.8    Summers, M.F.9
  • 62
    • 0034232357 scopus 로고    scopus 로고
    • The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems
    • 10.1093/embo-reports/kvd001
    • Varani G, McClain WH (2000) The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems. EMBO Rep 1:18-23
    • (2000) EMBO Rep , vol.1 , pp. 18-23
    • Varani, G.1    McClain, W.H.2
  • 63
    • 34548454557 scopus 로고    scopus 로고
    • Structural features of metabolite-sensing riboswitches
    • 10.1016/j.tibs.2007.08.005
    • Wakeman CA, Winkler WC, Dann CE III (2007) Structural features of metabolite-sensing riboswitches. Trends Biochem Sci 32:415-424
    • (2007) Trends Biochem Sci , vol.32 , pp. 415-424
    • Wakeman, C.A.1    Winkler, W.C.2    Dann Iii, C.E.3
  • 64
    • 1242319530 scopus 로고    scopus 로고
    • Periodicity in residual dipolar couplings and nucleic acid structures
    • 10.1021/ja039446g
    • Walsh JD, Cabello-Villegas J, Wang YX (2004) Periodicity in residual dipolar couplings and nucleic acid structures. J Am Chem Soc 126:1938-1939
    • (2004) J Am Chem Soc , vol.126 , pp. 1938-1939
    • Walsh, J.D.1    Cabello-Villegas, J.2    Wang, Y.X.3
  • 66
    • 70349783815 scopus 로고    scopus 로고
    • A method for helical RNA global structure determination in solution using small-Angle x-ray scattering and NMR measurements
    • 10.1016/j.jmb.2009.08.001
    • Wang J, Zuo X, Yu P, Xu H, Starich MR, Tiede DM, Shapiro BA, Schwieters CD, Wang YX (2009) A method for helical RNA global structure determination in solution using small-Angle x-ray scattering and NMR measurements. J Mol Biol 393:717-734
    • (2009) J Mol Biol , vol.393 , pp. 717-734
    • Wang, J.1    Zuo, X.2    Yu, P.3    Xu, H.4    Starich, M.R.5    Tiede, D.M.6    Shapiro, B.A.7    Schwieters, C.D.8    Wang, Y.X.9
  • 67
    • 77957120017 scopus 로고    scopus 로고
    • Rapid global structure determination of large RNA and RNA complexes using NMR and small-Angle X-ray scattering
    • Wang YX, Zuo X, Wang J, Yu P, Butcher SE (2010) Rapid global structure determination of large RNA and RNA complexes using NMR and small-Angle X-ray scattering. Methods 52:180-191
    • (2010) Methods , vol.52 , pp. 180-191
    • Wang, Y.X.1    Zuo, X.2    Wang, J.3    Yu, P.4    Butcher, S.E.5
  • 68
    • 77955787630 scopus 로고    scopus 로고
    • Advances in RNA structure analysis by chemical probing
    • 10.1016/j.sbi.2010.04.001
    • Weeks KM (2010) Advances in RNA structure analysis by chemical probing. Curr Opin Struct Biol 20:295-304
    • (2010) Curr Opin Struct Biol , vol.20 , pp. 295-304
    • Weeks, K.M.1
  • 70
    • 0026410969 scopus 로고
    • Relationship between nuclear magnetic resonance chemical shift and protein secondary structure
    • 10.1016/0022-2836(91)90214-Q
    • Wishart DS, Sykes BD, Richards FM (1991) Relationship between nuclear magnetic resonance chemical shift and protein secondary structure. J Mol Biol 222:311-333
    • (1991) J Mol Biol , vol.222 , pp. 311-333
    • Wishart, D.S.1    Sykes, B.D.2    Richards, F.M.3
  • 71
    • 0026597879 scopus 로고
    • The chemical shift index: A fast and simple method for the assignment of protein secondary structure through NMR spectroscopy
    • 10.1021/bi00121a010
    • Wishart DS, Sykes BD, Richards FM (1992) The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy. Biochemistry 31:1647-1651
    • (1992) Biochemistry , vol.31 , pp. 1647-1651
    • Wishart, D.S.1    Sykes, B.D.2    Richards, F.M.3
  • 72
    • 48449095850 scopus 로고    scopus 로고
    • CS23D: A web server for rapid protein structure generation using NMR chemical shifts and sequence data
    • 10.1093/nar/gkn305
    • Wishart DS, Arndt D, Berjanskii M, Tang P, Zhou J, Lin G (2008) CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data. Nucleic Acids Res 36:W496-W502
    • (2008) Nucleic Acids Res , vol.36
    • Wishart, D.S.1    Arndt, D.2    Berjanskii, M.3    Tang, P.4    Zhou, J.5    Lin, G.6
  • 75
    • 0030031397 scopus 로고    scopus 로고
    • Determining RNA solution structure by segmental isotopic labeling and NMR: Application to Caenorhabditis elegans spliced leader RNA 1
    • 1996PNAS.93.44X 10.1073/pnas.93.1.44
    • Xu J, Lapham J, Crothers DM (1996) Determining RNA solution structure by segmental isotopic labeling and NMR: application to Caenorhabditis elegans spliced leader RNA 1. Proc Natl Acad Sci USA 93:44-48
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 44-48
    • Xu, J.1    Lapham, J.2    Crothers, D.M.3
  • 76
    • 33751536346 scopus 로고    scopus 로고
    • Solution structure of the Rous sarcoma virus nucleocapsid protein:uY RNA packaging signal complex
    • 10.1016/j.jmb.2006.10.013
    • Zhou J, Bean RL, Vogt VM, Summers MF (2006) Solution structure of the Rous sarcoma virus nucleocapsid protein:uY RNA packaging signal complex. J Mol Biol 365:453-467
    • (2006) J Mol Biol , vol.365 , pp. 453-467
    • Zhou, J.1    Bean, R.L.2    Vogt, V.M.3    Summers, M.F.4
  • 77
    • 41449107849 scopus 로고    scopus 로고
    • Global molecular structure and interfaces: Refining an RNA:RNA complex structure using solution X-ray scattering data
    • 10.1021/ja7114508
    • Zuo X, Wang J, Foster TR, Schwieters CD, Tiede DM, Butcher SE, Wang Y-X (2008) Global molecular structure and interfaces: refining an RNA:RNA complex structure using solution X-ray scattering data. J Am Chem Soc 130:3292-3293
    • (2008) J Am Chem Soc , vol.130 , pp. 3292-3293
    • Zuo, X.1    Wang, J.2    Foster, T.R.3    Schwieters, C.D.4    Tiede, D.M.5    Butcher, S.E.6    Wang, Y.-X.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.