메뉴 건너뛰기




Volumn 6, Issue 4, 2014, Pages 599-607

The dsRBP and Inactive Editor ADR-1Utilizes dsRNA Binding to Regulate A-to-I RNA Editing across the C.elegans Transcriptome

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE DEAMINASE; DOUBLE STRANDED RNA; PROTEIN ADR 1; PROTEIN ADR 2; TRANSCRIPTOME; UNCLASSIFIED DRUG; ADENOSINE; ADR 1 PROTEIN; ADR 2 PROTEIN; CYTOSINE; GUANINE; HELMINTH PROTEIN; INOSINE; MESSENGER RNA; RNA BINDING PROTEIN;

EID: 84896730394     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2014.01.011     Document Type: Article
Times cited : (55)

References (54)
  • 1
    • 84855320189 scopus 로고    scopus 로고
    • Accurate identification of A-to-I RNA editing in human by transcriptome sequencing
    • Bahn J.H., Lee J.H., Li G., Greer C., Peng G., Xiao X. Accurate identification of A-to-I RNA editing in human by transcriptome sequencing. Genome Res. 2012, 22:142-150.
    • (2012) Genome Res. , vol.22 , pp. 142-150
    • Bahn, J.H.1    Lee, J.H.2    Li, G.3    Greer, C.4    Peng, G.5    Xiao, X.6
  • 2
    • 82255179149 scopus 로고    scopus 로고
    • Modulation of dADAR-dependent RNA editing by the Drosophila fragile X mental retardation protein
    • Bhogal B., Jepson J.E., Savva Y.A., Pepper A.S., Reenan R.A., Jongens T.A. Modulation of dADAR-dependent RNA editing by the Drosophila fragile X mental retardation protein. Nat. Neurosci. 2011, 14:1517-1524.
    • (2011) Nat. Neurosci. , vol.14 , pp. 1517-1524
    • Bhogal, B.1    Jepson, J.E.2    Savva, Y.A.3    Pepper, A.S.4    Reenan, R.A.5    Jongens, T.A.6
  • 4
    • 84880360716 scopus 로고    scopus 로고
    • Characterization and comparison of human nuclear and cytosolic editomes
    • Chen L. Characterization and comparison of human nuclear and cytosolic editomes. Proc. Natl. Acad. Sci. USA 2013, 110:E2741-E2747.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110
    • Chen, L.1
  • 5
    • 84868106296 scopus 로고    scopus 로고
    • A distant cis acting intronic element induces site-selective RNA editing
    • Daniel C., Venø M.T., Ekdahl Y., Kjems J., Öhman M. A distant cis acting intronic element induces site-selective RNA editing. Nucleic Acids Res. 2012, 40:9876-9886.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 9876-9886
    • Daniel, C.1    Venø, M.T.2    Ekdahl, Y.3    Kjems, J.4    Öhman, M.5
  • 7
    • 79956271523 scopus 로고    scopus 로고
    • Predicting sites of ADAR editing in double-stranded RNA
    • Eggington J.M., Greene T., Bass B.L. Predicting sites of ADAR editing in double-stranded RNA. Nat Commun 2011, 2:319.
    • (2011) Nat Commun , vol.2 , pp. 319
    • Eggington, J.M.1    Greene, T.2    Bass, B.L.3
  • 8
    • 77951922861 scopus 로고    scopus 로고
    • Molecular diversity through RNA editing: abalancing act
    • Farajollahi S., Maas S. Molecular diversity through RNA editing: abalancing act. Trends Genet. 2010, 26:221-230.
    • (2010) Trends Genet. , vol.26 , pp. 221-230
    • Farajollahi, S.1    Maas, S.2
  • 9
    • 84874618556 scopus 로고    scopus 로고
    • A high-throughput screen to identify enhancers of ADAR-mediated RNA-editing
    • Garncarz W., Tariq A., Handl C., Pusch O., Jantsch M.F. A high-throughput screen to identify enhancers of ADAR-mediated RNA-editing. RNA Biol. 2013, 10:192-204.
    • (2013) RNA Biol. , vol.10 , pp. 192-204
    • Garncarz, W.1    Tariq, A.2    Handl, C.3    Pusch, O.4    Jantsch, M.F.5
  • 11
    • 0034507456 scopus 로고    scopus 로고
    • Functions and mechanisms of RNA editing
    • Gott J.M., Emeson R.B. Functions and mechanisms of RNA editing. Annu. Rev. Genet. 2000, 34:499-531.
    • (2000) Annu. Rev. Genet. , vol.34 , pp. 499-531
    • Gott, J.M.1    Emeson, R.B.2
  • 12
    • 77954313452 scopus 로고    scopus 로고
    • ADAR editing in double-stranded UTRs and other noncoding RNA sequences
    • Hundley H.A., Bass B.L. ADAR editing in double-stranded UTRs and other noncoding RNA sequences. Trends Biochem. Sci. 2010, 35:377-383.
    • (2010) Trends Biochem. Sci. , vol.35 , pp. 377-383
    • Hundley, H.A.1    Bass, B.L.2
  • 13
    • 52949140596 scopus 로고    scopus 로고
    • C.elegans and H.sapiens mRNAs with edited 3' UTRs are present on polysomes
    • Hundley H.A., Krauchuk A.A., Bass B.L. C.elegans and H.sapiens mRNAs with edited 3' UTRs are present on polysomes. RNA 2008, 14:2050-2060.
    • (2008) RNA , vol.14 , pp. 2050-2060
    • Hundley, H.A.1    Krauchuk, A.A.2    Bass, B.L.3
  • 14
    • 0037020153 scopus 로고    scopus 로고
    • Adenosine to inosine editing by ADAR2 requires formation of a ternary complex on the GluR-B R/G site
    • Jaikaran D.C., Collins C.H., MacMillan A.M. Adenosine to inosine editing by ADAR2 requires formation of a ternary complex on the GluR-B R/G site. J.Biol. Chem. 2002, 277:37624-37629.
    • (2002) J.Biol. Chem. , vol.277 , pp. 37624-37629
    • Jaikaran, D.C.1    Collins, C.H.2    MacMillan, A.M.3
  • 15
    • 84858328300 scopus 로고    scopus 로고
    • Comment on "Widespread RNA and DNA sequence differences in the human transcriptome"
    • author reply 1302
    • Kleinman C.L., Majewski J. Comment on "Widespread RNA and DNA sequence differences in the human transcriptome". Science 2012, 335:1302. author reply 1302.
    • (2012) Science , vol.335 , pp. 1302
    • Kleinman, C.L.1    Majewski, J.2
  • 16
    • 0031003879 scopus 로고    scopus 로고
    • Editing of glutamate receptor B subunit ion channel RNAs by four alternatively spliced DRADA2 double-stranded RNA adenosine deaminases
    • Lai F., Chen C.X., Carter K.C., Nishikura K. Editing of glutamate receptor B subunit ion channel RNAs by four alternatively spliced DRADA2 double-stranded RNA adenosine deaminases. Mol. Cell. Biol. 1997, 17:2413-2424.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 2413-2424
    • Lai, F.1    Chen, C.X.2    Carter, K.C.3    Nishikura, K.4
  • 17
    • 84878087827 scopus 로고    scopus 로고
    • Analysis and design of RNA sequencing experiments for identifying RNA editing and other single-nucleotide variants
    • Lee J.H., Ang J.K., Xiao X. Analysis and design of RNA sequencing experiments for identifying RNA editing and other single-nucleotide variants. RNA 2013, 19:725-732.
    • (2013) RNA , vol.19 , pp. 725-732
    • Lee, J.H.1    Ang, J.K.2    Xiao, X.3
  • 18
    • 84873867134 scopus 로고    scopus 로고
    • RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans
    • LeGendre J.B., Campbell Z.T., Kroll-Conner P., Anderson P., Kimble J., Wickens M. RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans. J.Biol. Chem. 2013, 288:2532-2545.
    • (2013) J.Biol. Chem. , vol.288 , pp. 2532-2545
    • LeGendre, J.B.1    Campbell, Z.T.2    Kroll-Conner, P.3    Anderson, P.4    Kimble, J.5    Wickens, M.6
  • 19
    • 0034711082 scopus 로고    scopus 로고
    • Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities
    • Lehmann K.A., Bass B.L. Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities. Biochemistry 2000, 39:12875-12884.
    • (2000) Biochemistry , vol.39 , pp. 12875-12884
    • Lehmann, K.A.1    Bass, B.L.2
  • 21
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li H., Ruan J., Durbin R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 2008, 18:1851-1858.
    • (2008) Genome Res. , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 22
    • 84858328300 scopus 로고    scopus 로고
    • Comment on "Widespread RNA and DNA sequence differences in the human transcriptome"
    • author reply 1302
    • Lin W., Piskol R., Tan M.H., Li J.B. Comment on "Widespread RNA and DNA sequence differences in the human transcriptome". Science 2012, 335:1302. author reply 1302.
    • (2012) Science , vol.335 , pp. 1302
    • Lin, W.1    Piskol, R.2    Tan, M.H.3    Li, J.B.4
  • 23
    • 0035807807 scopus 로고    scopus 로고
    • Underediting of glutamate receptor GluR-B mRNA in malignant gliomas
    • Maas S., Patt S., Schrey M., Rich A. Underediting of glutamate receptor GluR-B mRNA in malignant gliomas. Proc. Natl. Acad. Sci. USA 2001, 98:14687-14692.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 14687-14692
    • Maas, S.1    Patt, S.2    Schrey, M.3    Rich, A.4
  • 25
    • 0033022121 scopus 로고    scopus 로고
    • Long RNA hairpins that contain inosine are present in Caenorhabditis elegans poly(A)+ RNA
    • Morse D.P., Bass B.L. Long RNA hairpins that contain inosine are present in Caenorhabditis elegans poly(A)+ RNA. Proc. Natl. Acad. Sci. USA 1999, 96:6048-6053.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 6048-6053
    • Morse, D.P.1    Bass, B.L.2
  • 26
    • 0037062438 scopus 로고    scopus 로고
    • RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA
    • Morse D.P., Aruscavage P.J., Bass B.L. RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA. Proc. Natl. Acad. Sci. USA 2002, Volume 99:7906-7911.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 7906-7911
    • Morse, D.P.1    Aruscavage, P.J.2    Bass, B.L.3
  • 27
    • 77952293063 scopus 로고    scopus 로고
    • Functions and regulation of RNA editing by ADAR deaminases
    • Nishikura K. Functions and regulation of RNA editing by ADAR deaminases. Annu. Rev. Biochem. 2010, 79:321-349.
    • (2010) Annu. Rev. Biochem. , vol.79 , pp. 321-349
    • Nishikura, K.1
  • 28
    • 58149350460 scopus 로고    scopus 로고
    • ADBP-1 regulates an ADAR RNA-editing enzyme to antagonize RNA-interference-mediated gene silencing in Caenorhabditis elegans
    • Ohta H., Fujiwara M., Ohshima Y., Ishihara T. ADBP-1 regulates an ADAR RNA-editing enzyme to antagonize RNA-interference-mediated gene silencing in Caenorhabditis elegans. Genetics 2008, 180:785-796.
    • (2008) Genetics , vol.180 , pp. 785-796
    • Ohta, H.1    Fujiwara, M.2    Ohshima, Y.3    Ishihara, T.4
  • 29
    • 84856746272 scopus 로고    scopus 로고
    • Activity regulation of adenosine deaminases acting on RNA (ADARs)
    • Orlandi C., Barbon A., Barlati S. Activity regulation of adenosine deaminases acting on RNA (ADARs). Mol. Neurobiol. 2012, 45:61-75.
    • (2012) Mol. Neurobiol. , vol.45 , pp. 61-75
    • Orlandi, C.1    Barbon, A.2    Barlati, S.3
  • 30
    • 0033943052 scopus 로고    scopus 로고
    • DADAR, a Drosophila double-stranded RNA-specific adenosine deaminase is highly developmentally regulated and is itself a target for RNA editing
    • Palladino M.J., Keegan L.P., O'Connell M.A., Reenan R.A. dADAR, a Drosophila double-stranded RNA-specific adenosine deaminase is highly developmentally regulated and is itself a target for RNA editing. RNA 2000, 6:1004-1018.
    • (2000) RNA , vol.6 , pp. 1004-1018
    • Palladino, M.J.1    Keegan, L.P.2    O'Connell, M.A.3    Reenan, R.A.4
  • 32
    • 0032481315 scopus 로고    scopus 로고
    • Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA
    • Paul M.S., Bass B.L. Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA. EMBO J. 1998, 17:1120-1127.
    • (1998) EMBO J. , vol.17 , pp. 1120-1127
    • Paul, M.S.1    Bass, B.L.2
  • 33
    • 84858328300 scopus 로고    scopus 로고
    • Comment on "Widespread RNA and DNA sequence differences in the human transcriptome"
    • author reply 1302
    • Pickrell J.K., Gilad Y., Pritchard J.K. Comment on "Widespread RNA and DNA sequence differences in the human transcriptome". Science 2012, 335:1302. author reply 1302.
    • (2012) Science , vol.335 , pp. 1302
    • Pickrell, J.K.1    Gilad, Y.2    Pritchard, J.K.3
  • 34
    • 84861970552 scopus 로고    scopus 로고
    • Accurate identification of human Alu and non-Alu RNA editing sites
    • Ramaswami G., Lin W., Piskol R., Tan M.H., Davis C., Li J.B. Accurate identification of human Alu and non-Alu RNA editing sites. Nat. Methods 2012, 9:579-581.
    • (2012) Nat. Methods , vol.9 , pp. 579-581
    • Ramaswami, G.1    Lin, W.2    Piskol, R.3    Tan, M.H.4    Davis, C.5    Li, J.B.6
  • 37
    • 44149094073 scopus 로고    scopus 로고
    • Specificity of ADAR-mediated RNA editing in newly identified targets
    • Riedmann E.M., Schopoff S., Hartner J.C., Jantsch M.F. Specificity of ADAR-mediated RNA editing in newly identified targets. RNA 2008, 14:1110-1118.
    • (2008) RNA , vol.14 , pp. 1110-1118
    • Riedmann, E.M.1    Schopoff, S.2    Hartner, J.C.3    Jantsch, M.F.4
  • 38
    • 84860692434 scopus 로고    scopus 로고
    • A-to-I RNA editing: effects on proteins key to neural excitability
    • Rosenthal J.J., Seeburg P.H. A-to-I RNA editing: effects on proteins key to neural excitability. Neuron 2012, 74:432-439.
    • (2012) Neuron , vol.74 , pp. 432-439
    • Rosenthal, J.J.1    Seeburg, P.H.2
  • 39
    • 0033529064 scopus 로고    scopus 로고
    • Regulation of alternative splicing by RNA editing
    • Rueter S.M., Dawson T.R., Emeson R.B. Regulation of alternative splicing by RNA editing. Nature 1999, 399:75-80.
    • (1999) Nature , vol.399 , pp. 75-80
    • Rueter, S.M.1    Dawson, T.R.2    Emeson, R.B.3
  • 40
    • 0032535613 scopus 로고    scopus 로고
    • Molecular basis of double-stranded RNA-protein interactions: structure of a dsRNA-binding domain complexed with dsRNA
    • Ryter J.M., Schultz S.C. Molecular basis of double-stranded RNA-protein interactions: structure of a dsRNA-binding domain complexed with dsRNA. EMBO J. 1998, 17:7505-7513.
    • (1998) EMBO J. , vol.17 , pp. 7505-7513
    • Ryter, J.M.1    Schultz, S.C.2
  • 41
    • 0345133268 scopus 로고    scopus 로고
    • Modulation of RNA editing by functional nucleolar sequestration of ADAR2
    • Sansam C.L., Wells K.S., Emeson R.B. Modulation of RNA editing by functional nucleolar sequestration of ADAR2. Proc. Natl. Acad. Sci. USA 2003, 100:14018-14023.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 14018-14023
    • Sansam, C.L.1    Wells, K.S.2    Emeson, R.B.3
  • 44
    • 67949118800 scopus 로고    scopus 로고
    • Dynamic regulation of RNA editing of ion channels and receptors in the mammalian nervous system
    • Tan B.Z., Huang H., Lam R., Soong T.W. Dynamic regulation of RNA editing of ion channels and receptors in the mammalian nervous system. Mol. Brain 2009, 2:13.
    • (2009) Mol. Brain , vol.2 , pp. 13
    • Tan, B.Z.1    Huang, H.2    Lam, R.3    Soong, T.W.4
  • 45
    • 84865172834 scopus 로고    scopus 로고
    • Transcript diversification in the nervous system: a to I RNA editing in CNS function and disease development
    • Tariq A., Jantsch M.F. Transcript diversification in the nervous system: a to I RNA editing in CNS function and disease development. Front Neurosci 2012, 6:99.
    • (2012) Front Neurosci , vol.6 , pp. 99
    • Tariq, A.1    Jantsch, M.F.2
  • 46
    • 84876362963 scopus 로고    scopus 로고
    • RNA-interacting proteins act as site-specific repressors of ADAR2-mediated RNA editing and fluctuate upon neuronal stimulation
    • Tariq A., Garncarz W., Handl C., Balik A., Pusch O., Jantsch M.F. RNA-interacting proteins act as site-specific repressors of ADAR2-mediated RNA editing and fluctuate upon neuronal stimulation. Nucleic Acids Res. 2013, 41:2581-2593.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 2581-2593
    • Tariq, A.1    Garncarz, W.2    Handl, C.3    Balik, A.4    Pusch, O.5    Jantsch, M.F.6
  • 48
    • 0037112823 scopus 로고    scopus 로고
    • RNA editing by ADARs is important for normal behavior in Caenorhabditis elegans
    • Tonkin L.A., Saccomanno L., Morse D.P., Brodigan T., Krause M., Bass B.L. RNA editing by ADARs is important for normal behavior in Caenorhabditis elegans. EMBO J. 2002, 21:6025-6035.
    • (2002) EMBO J. , vol.21 , pp. 6025-6035
    • Tonkin, L.A.1    Saccomanno, L.2    Morse, D.P.3    Brodigan, T.4    Krause, M.5    Bass, B.L.6
  • 49
    • 33745622868 scopus 로고    scopus 로고
    • Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments
    • Vacic V., Iakoucheva L.M., Radivojac P. Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments. Bioinformatics 2006, 22:1536-1537.
    • (2006) Bioinformatics , vol.22 , pp. 1536-1537
    • Vacic, V.1    Iakoucheva, L.M.2    Radivojac, P.3
  • 50
    • 34447542355 scopus 로고    scopus 로고
    • RNA binding-independent dimerization of adenosine deaminases acting on RNA and dominant negative effects of nonfunctional subunits on dimer functions
    • Valente L., Nishikura K. RNA binding-independent dimerization of adenosine deaminases acting on RNA and dominant negative effects of nonfunctional subunits on dimer functions. J.Biol. Chem. 2007, 282:16054-16061.
    • (2007) J.Biol. Chem. , vol.282 , pp. 16054-16061
    • Valente, L.1    Nishikura, K.2
  • 51
    • 84857730206 scopus 로고    scopus 로고
    • Site-selective versus promiscuous A-to-I editing
    • Wahlstedt H., Ohman M. Site-selective versus promiscuous A-to-I editing. Wiley Interdiscip Rev RNA 2011, 2:761-771.
    • (2011) Wiley Interdiscip Rev RNA , vol.2 , pp. 761-771
    • Wahlstedt, H.1    Ohman, M.2
  • 52
    • 66449129109 scopus 로고    scopus 로고
    • Large-scale mRNA sequencing determines global regulation of RNA editing during brain development
    • Wahlstedt H., Daniel C., Ensterö M., Ohman M. Large-scale mRNA sequencing determines global regulation of RNA editing during brain development. Genome Res. 2009, 19:978-986.
    • (2009) Genome Res. , vol.19 , pp. 978-986
    • Wahlstedt, H.1    Daniel, C.2    Ensterö, M.3    Ohman, M.4
  • 53
    • 84887617987 scopus 로고    scopus 로고
    • ADAR regulates RNA editing, transcript stability, and gene expression
    • Wang I.X., So E., Devlin J.L., Zhao Y., Wu M., Cheung V.G. ADAR regulates RNA editing, transcript stability, and gene expression. Cell Rep 2013, 5:849-860.
    • (2013) Cell Rep , vol.5 , pp. 849-860
    • Wang, I.X.1    So, E.2    Devlin, J.L.3    Zhao, Y.4    Wu, M.5    Cheung, V.G.6
  • 54
    • 84864614462 scopus 로고    scopus 로고
    • Effects of ADARs on small RNA processing pathways in C. elegans
    • Warf M.B., Shepherd B.A., Johnson W.E., Bass B.L. Effects of ADARs on small RNA processing pathways in C. elegans. Genome Res. 2012, 22:1488-1498.
    • (2012) Genome Res. , vol.22 , pp. 1488-1498
    • Warf, M.B.1    Shepherd, B.A.2    Johnson, W.E.3    Bass, B.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.