-
1
-
-
34249316905
-
RNA-binding proteins. Modular design for efficient function
-
Lunde, B. M., Moore, C., and Varani, G. (2007) RNA-binding proteins. Modular design for efficient function. Nat. Rev. Mol. Cell Biol. 8, 479-490
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, pp. 479-490
-
-
Lunde, B.M.1
Moore, C.2
Varani, G.3
-
2
-
-
0036512117
-
Messenger-RNA-binding proteins and the messages they carry
-
Dreyfuss, G., Kim, V. N., and Kataoka, N. (2002) Messenger-RNA-binding proteins and the messages they carry. Nat. Rev. Mol. Cell Biol. 3, 195-205
-
(2002)
Nat. Rev. Mol. Cell Biol.
, vol.3
, pp. 195-205
-
-
Dreyfuss, G.1
Kim, V.N.2
Kataoka, N.3
-
3
-
-
0034212951
-
Staufen. A common component of mRNA transport in oocytes and neurons?
-
Roegiers, F., and Jan, Y. N. (2000) Staufen. A common component of mRNA transport in oocytes and neurons? Trends Cell Biol. 10, 220-224
-
(2000)
Trends Cell Biol.
, vol.10
, pp. 220-224
-
-
Roegiers, F.1
Jan, Y.N.2
-
4
-
-
0034653570
-
Distinct roles of two conserved Staufen domains in oskar mRNA localization and translation
-
Micklem, D. R., Adams, J., Grünert, S., and St Johnston, D. (2000) Distinct roles of two conserved Staufen domains in oskar mRNA localization and translation. EMBO J. 19, 1366-1377
-
(2000)
EMBO J.
, vol.19
, pp. 1366-1377
-
-
Micklem, D.R.1
Adams, J.2
Grünert, S.3
St Johnston, D.4
-
5
-
-
12944327374
-
Mammalian Staufen1 recruits Upf1 to specific mRNA3'UTRs so as to elicitmRNA decay
-
Kim, Y. K., Furic, L., Desgroseillers, L., and Maquat, L. E. (2005) Mammalian Staufen1 recruits Upf1 to specific mRNA3'UTRs so as to elicitmRNA decay. Cell 120, 195-208
-
(2005)
Cell
, vol.120
, pp. 195-208
-
-
Kim, Y.K.1
Furic, L.2
Desgroseillers, L.3
Maquat, L.E.4
-
6
-
-
0037711199
-
The dsRNA binding protein family. Critical roles, diverse cellular functions
-
Saunders, L. R., and Barber, G. N. (2003) The dsRNA binding protein family. Critical roles, diverse cellular functions. FASEB J. 17, 961-983
-
(2003)
FASEB J.
, vol.17
, pp. 961-983
-
-
Saunders, L.R.1
Barber, G.N.2
-
7
-
-
0026480392
-
A conserved double-stranded RNA-binding domain
-
St Johnston, D., Brown, N. H., Gall, J. G., and Jantsch, M. (1992) A conserved double-stranded RNA-binding domain. Proc. Natl. Acad. Sci. U.S.A. 89, 10979-10983
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 10979-10983
-
-
St Johnston, D.1
Brown, N.H.2
Gall, J.G.3
Jantsch, M.4
-
8
-
-
18444380595
-
The double-stranded RNA-binding motif, a versatile macromolecular docking platform
-
Chang, K. Y., and Ramos, A. (2005) The double-stranded RNA-binding motif, a versatile macromolecular docking platform. FEBS J. 272, 2109-2117
-
(2005)
FEBS J.
, vol.272
, pp. 2109-2117
-
-
Chang, K.Y.1
Ramos, A.2
-
9
-
-
56249098241
-
DsRNA binding properties of RDE-4 and TRBP reflect their distinct roles in RNAi
-
Parker, G. S., Maity, T. S., and Bass, B. L. (2008) dsRNA binding properties of RDE-4 and TRBP reflect their distinct roles in RNAi. J. Mol. Biol. 384, 967-979
-
(2008)
J. Mol. Biol.
, vol.384
, pp. 967-979
-
-
Parker, G.S.1
Maity, T.S.2
Bass, B.L.3
-
10
-
-
0032545926
-
Staufen-dependent localization of prospero mRNA contributes to neuroblast daughter-cell fate
-
Broadus, J., Fuerstenberg, S., and Doe, C. Q. (1998) Staufen-dependent localization of prospero mRNA contributes to neuroblast daughter-cell fate. Nature 391, 792-795
-
(1998)
Nature
, vol.391
, pp. 792-795
-
-
Broadus, J.1
Fuerstenberg, S.2
Doe, C.Q.3
-
11
-
-
0032535613
-
Molecular basis of double-stranded RNA-protein interactions. Structure of a dsRNA-binding domain complexed with dsRNA
-
Ryter, J. M., and Schultz, S. C. (1998) Molecular basis of double-stranded RNA-protein interactions. Structure of a dsRNA-binding domain complexed with dsRNA. EMBO J. 17, 7505-7513
-
(1998)
EMBO J.
, vol.17
, pp. 7505-7513
-
-
Ryter, J.M.1
Schultz, S.C.2
-
12
-
-
0342723737
-
RNA recognition by a Staufen double-stranded RNA-binding domain
-
Ramos, A., Grünert, S., Adams, J., Micklem, D. R., Proctor, M. R., Freund, S., Bycroft, M., St Johnston, D., and Varani, G. (2000) RNA recognition by a Staufen double-stranded RNA-binding domain. EMBO J. 19, 997-1009
-
(2000)
EMBO J.
, vol.19
, pp. 997-1009
-
-
Ramos, A.1
Grünert, S.2
Adams, J.3
Micklem, D.R.4
Proctor, M.R.5
Freund, S.6
Bycroft, M.7
St Johnston, D.8
Varani, G.9
-
13
-
-
1542581581
-
Noncatalytic assembly of ribonuclease III with double-stranded RNA
-
Blaszczyk, J., Gan, J., Tropea, J. E., Court, D. L., Waugh, D. S., and Ji, X. (2004) Noncatalytic assembly of ribonuclease III with double-stranded RNA. Structure 12, 457-466
-
(2004)
Structure
, vol.12
, pp. 457-466
-
-
Blaszczyk, J.1
Gan, J.2
Tropea, J.E.3
Court, D.L.4
Waugh, D.S.5
Ji, X.6
-
14
-
-
78650324516
-
Solution structure of the Drosha double-stranded RNAbinding domain
-
Mueller, G. A., Miller, M. T., Derose, E. F., Ghosh, M., London, R. E., and Hall, T. M. (2010) Solution structure of the Drosha double-stranded RNAbinding domain. Silence 1, 2
-
(2010)
Silence
, vol.1
, pp. 2
-
-
Mueller, G.A.1
Miller, M.T.2
Derose, E.F.3
Ghosh, M.4
London, R.E.5
Hall, T.M.6
-
15
-
-
0034192148
-
Proteins binding to duplexed RNA. One motif, multiple functions
-
Fierro-Monti, I., and Mathews, M. B. (2000) Proteins binding to duplexed RNA. One motif, multiple functions. Trends Biochem. Sci. 25, 241-246
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 241-246
-
-
Fierro-Monti, I.1
Mathews, M.B.2
-
16
-
-
0035905766
-
Role for a bidentate ribonuclease in the initiation step of RNA interference
-
Bernstein, E., Caudy, A. A., Hammond, S. M., and Hannon, G. J. (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409, 363-366
-
(2001)
Nature
, vol.409
, pp. 363-366
-
-
Bernstein, E.1
Caudy, A.A.2
Hammond, S.M.3
Hannon, G.J.4
-
17
-
-
77954313452
-
ADAR editing in double-stranded UTRs and other noncoding RNA sequences
-
Hundley, H. A., and Bass, B. L. (2010) ADAR editing in double-stranded UTRs and other noncoding RNA sequences. Trends Biochem. Sci. 35, 377-383
-
(2010)
Trends Biochem Sci
, vol.35
, pp. 377-383
-
-
Hundley, H.A.1
Bass, B.L.2
-
18
-
-
79551648715
-
RNAediting by mammalian ADARs
-
Hogg, M., Paro, S., Keegan, L. P., and O'Connell, M. A. (2011)RNAediting by mammalian ADARs. Adv. Genet. 73, 87-120
-
(2011)
Adv. Genet.
, vol.73
, pp. 87-120
-
-
Hogg, M.1
Paro, S.2
Keegan, L.P.3
O'Connell, M.A.4
-
19
-
-
0033230617
-
PKR. A sentinel kinase for cellular stress
-
Williams, B. R. (1999) PKR. A sentinel kinase for cellular stress. Oncogene 18, 6112-6120
-
(1999)
Oncogene
, vol.18
, pp. 6112-6120
-
-
Williams, B.R.1
-
20
-
-
0025298202
-
Molecular cloning and characterization of the human double-stranded RNA-activated protein kinase induced by interferon
-
Meurs, E., Chong, K., Galabru, J., Thomas, N. S., Kerr, I. M., Williams, B. R., and Hovanessian, A. G. (1990) Molecular cloning and characterization of the human double-stranded RNA-activated protein kinase induced by interferon. Cell 62, 379-390
-
(1990)
Cell
, vol.62
, pp. 379-390
-
-
Meurs, E.1
Chong, K.2
Galabru, J.3
Thomas, N.S.4
Kerr, I.M.5
Williams, B.R.6
Hovanessian, A.G.7
-
21
-
-
0037188904
-
The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C elegans
-
Tabara, H., Yigit, E., Siomi, H., and Mello, C. C. (2002) The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans. Cell 109, 861-871
-
(2002)
Cell
, vol.109
, pp. 861-871
-
-
Tabara, H.1
Yigit, E.2
Siomi, H.3
Mello, C.C.4
-
22
-
-
70350569212
-
Endo-siRNAs depend on a new isoform of loquacious and target artificially introduced, high-copy sequences
-
Hartig, J. V., Esslinger, S., Böttcher, R., Saito, K., and Förstemann, K. (2009) Endo-siRNAs depend on a new isoform of loquacious and target artificially introduced, high-copy sequences. EMBO J. 28, 2932-2944
-
(2009)
EMBO J.
, vol.28
, pp. 2932-2944
-
-
Hartig, J.V.1
Esslinger, S.2
Böttcher, R.3
Saito, K.4
Förstemann, K.5
-
23
-
-
0141868916
-
R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway
-
Liu, Q., Rand, T. A., Kalidas, S., Du, F., Kim, H. E., Smith, D. P., and Wang, X. (2003) R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway. Science 301, 1921-1925
-
(2003)
Science
, vol.301
, pp. 1921-1925
-
-
Liu, Q.1
Rand, T.A.2
Kalidas, S.3
Du, F.4
Kim, H.E.5
Smith, D.P.6
Wang, X.7
-
24
-
-
34547115237
-
Human TRBP and PACT directly interact with each other and associate with dicer to facilitate the production of small interfering RNA
-
Kok, K. H., Ng, M. H., Ching, Y. P., and Jin, D. Y. (2007) Human TRBP and PACT directly interact with each other and associate with dicer to facilitate the production of small interfering RNA. J. Biol. Chem. 282, 17649-17657
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 17649-17657
-
-
Kok, K.H.1
Ng, M.H.2
Ching, Y.P.3
Jin, D.Y.4
-
25
-
-
0032545933
-
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
-
Fire, A., Xu, S., Montgomery, M. K., Kostas, S. A., Driver, S. E., and Mello, C. C. (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391, 806-811
-
(1998)
Nature
, vol.391
, pp. 806-811
-
-
Fire, A.1
Xu, S.2
Montgomery, M.K.3
Kostas, S.A.4
Driver, S.E.5
Mello, C.C.6
-
26
-
-
4644336023
-
Revealing the world of RNA inter- ference
-
Mello, C. C., and Conte, D., Jr. (2004) Revealing the world of RNA inter- ference. Nature 431, 338-342
-
(2004)
Nature
, vol.431
, pp. 338-342
-
-
Mello, C.C.1
Conte Jr., D.2
-
27
-
-
0345306117
-
Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi
-
Sijen, T., and Plasterk, R. H. (2003) Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi. Nature 426, 310-314
-
(2003)
Nature
, vol.426
, pp. 310-314
-
-
Sijen, T.1
Plasterk, R.H.2
-
28
-
-
31544468112
-
RNAi. A defensive RNA-silencing against viruses and transposable elements
-
Buchon, N., and Vaury, C. (2006) RNAi. A defensive RNA-silencing against viruses and transposable elements. Heredity 96, 195-202
-
(2006)
Heredity
, vol.96
, pp. 195-202
-
-
Buchon, N.1
Vaury, C.2
-
29
-
-
33645979325
-
RNA interference directs innate immunity against viruses in adult Drosophila
-
Wang, X. H., Aliyari, R., Li, W. X., Li, H. W., Kim, K., Carthew, R., Atkinson, P., and Ding, S. W. (2006) RNA interference directs innate immunity against viruses in adult Drosophila. Science 312, 452-454
-
(2006)
Science
, vol.312
, pp. 452-454
-
-
Wang, X.H.1
Aliyari, R.2
Li, W.X.3
Li, H.W.4
Kim, K.5
Carthew, R.6
Atkinson, P.7
Ding, S.W.8
-
30
-
-
0022508110
-
Germline autonomy of maternal- effect mutations altering the embryonic body pattern of Drosophila
-
Schupbach, T., and Wieschaus, E. (1986) Germline autonomy of maternal- effect mutations altering the embryonic body pattern of Drosophila. Dev. Biol. 113, 443-448
-
(1986)
Dev. Biol.
, vol.113
, pp. 443-448
-
-
Schupbach, T.1
Wieschaus, E.2
-
31
-
-
0025734020
-
The maternal gene nanos has a central role in posterior pattern formation of the Drosophila embryo
-
Lehmann, R., and Nüsslein-Volhard, C. (1991) The maternal gene nanos has a central role in posterior pattern formation of the Drosophila embryo. Development 112, 679-691
-
(1991)
Development
, vol.112
, pp. 679-691
-
-
Lehmann, R.1
Nüsslein-Volhard, C.2
-
32
-
-
0025885105
-
Staufen, a gene required to localize maternal RNAs in the Drosophila egg
-
St Johnston, D., Beuchle, D., and Nüsslein-Volhard, C. (1991) Staufen, a gene required to localize maternal RNAs in the Drosophila egg. Cell 66, 51-63
-
(1991)
Cell
, vol.66
, pp. 51-63
-
-
St Johnston, D.1
Beuchle, D.2
Nüsslein-Volhard, C.3
-
33
-
-
0028639195
-
Staufen protein associates with the 3'UTR of bicoidmRNAto form particles that move in a microtubule-dependent manner
-
Ferrandon, D., Elphick, L., Nüsslein-Volhard, C., and St Johnston, D. (1994) Staufen protein associates with the 3'UTR of bicoidmRNAto form particles that move in a microtubule-dependent manner. Cell 79, 1221-1232
-
(1994)
Cell
, vol.79
, pp. 1221-1232
-
-
Ferrandon, D.1
Elphick, L.2
Nüsslein-Volhard, C.3
St Johnston, D.4
-
34
-
-
0030745426
-
Inscuteable and Staufen mediate asymmetric localization and segregation of prospero RNA during Drosophila neuroblast cell divisions
-
Li, P., Yang, X., Wasser, M., Cai, Y., and Chia, W. (1997) Inscuteable and Staufen mediate asymmetric localization and segregation of prospero RNA during Drosophila neuroblast cell divisions. Cell 90, 437-447
-
(1997)
Cell
, vol.90
, pp. 437-447
-
-
Li, P.1
Yang, X.2
Wasser, M.3
Cai, Y.4
Chia, W.5
-
35
-
-
0030939498
-
RNA-RNA interaction is required for the formation of specific bicoid mRNA 3'UTR-STAUFEN ribonucleoprotein particles
-
Ferrandon, D., Koch, I., Westhof, E., and Nüsslein-Volhard, C. (1997) RNA-RNA interaction is required for the formation of specific bicoid mRNA 3'UTR-STAUFEN ribonucleoprotein particles. EMBO J. 16, 1751-1758
-
(1997)
EMBO J.
, vol.16
, pp. 1751-1758
-
-
Ferrandon, D.1
Koch, I.2
Westhof, E.3
Nüsslein-Volhard, C.4
-
36
-
-
0032526140
-
Miranda mediates asymmetric protein and RNA localization in the developing nervous system
-
Schuldt, A. J., Adams, J. H., Davidson, C. M., Micklem, D. R., Haseloff, J., St Johnston, D., and Brand, A. H. (1998) Miranda mediates asymmetric protein and RNA localization in the developing nervous system. Genes Dev. 12, 1847-1857
-
(1998)
Genes Dev.
, vol.12
, pp. 1847-1857
-
-
Schuldt, A.J.1
Adams, J.H.2
Davidson, C.M.3
Micklem, D.R.4
Haseloff, J.5
St Johnston, D.6
Brand, A.H.7
-
37
-
-
0344466778
-
Microtubule-dependent recruitment of Staufengreen fluorescent protein into large RNA-containing granules and subsequent dendritic transport in living hippocampal neurons
-
Köhrmann, M., Luo, M., Kaether, C., DesGroseillers, L., Dotti, C. G., and Kiebler, M. A. (1999) Microtubule-dependent recruitment of Staufengreen fluorescent protein into large RNA-containing granules and subsequent dendritic transport in living hippocampal neurons. Mol. Biol. Cell 10, 2945-2953
-
(1999)
Mol. Biol. Cell
, vol.10
, pp. 2945-2953
-
-
Köhrmann, M.1
Luo, M.2
Kaether, C.3
Desgroseillers, L.4
Dotti, C.G.5
Kiebler, M.A.6
-
38
-
-
0037101951
-
Staufen2 isoforms localize to the somatodendritic domain of neurons and interact with different organelles
-
Duchaîne, T. F., Hemraj, I., Furic, L., Deitinghoff, A., Kiebler, M. A., and DesGroseillers, L. (2002) Staufen2 isoforms localize to the somatodendritic domain of neurons and interact with different organelles. J. Cell Sci. 115, 3285-3295
-
(2002)
J. Cell Sci.
, vol.115
, pp. 3285-3295
-
-
Duchaîne, T.F.1
Hemraj, I.2
Furic, L.3
Deitinghoff, A.4
Kiebler, M.A.5
Desgroseillers, L.6
-
39
-
-
0037452671
-
Isolation and characterization of Staufen-containing ribonucleoprotein particles from rat brain
-
Mallardo, M., Deitinghoff, A., Müller, J., Goetze, B., Macchi, P., Peters, C., and Kiebler, M. A. (2003) Isolation and characterization of Staufen-containing ribonucleoprotein particles from rat brain. Proc. Natl. Acad. Sci. U.S.A. 100, 2100-2105
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 2100-2105
-
-
Mallardo, M.1
Deitinghoff, A.2
Müller, J.3
Goetze, B.4
MacChi, P.5
Peters, C.6
Kiebler, M.A.7
-
40
-
-
0032952380
-
The mammalian staufen protein localizes to the somatodendritic domain of cultured hippocampal neurons: Implications for its involvement in mRNA transport
-
Kiebler, M. A., Hemraj, I., Verkade, P., Kohrmann, M., Fortes, P., Marión, R. M., Ortín, J., and Dotti, C. G. (1999) The mammalian staufen protein localizes to the somatodendritic domain of cultured hippocampal neurons: implications for its involvement in mRNA transport. J. Neurosci. 19, 288-297
-
(1999)
J. Neurosci.
, vol.19
, pp. 288-297
-
-
Kiebler, M.A.1
Hemraj, I.2
Verkade, P.3
Kohrmann, M.4
Fortes, P.5
Marión, R.M.6
Ortín, J.7
Dotti, C.G.8
-
41
-
-
0035829728
-
A role for a rat homolog of staufen in the transport of RNA to neuronal dendrites
-
Tang, S. J., Meulemans, D., Vazquez, L., Colaco, N., and Schuman, E. (2001) A role for a rat homolog of staufen in the transport of RNA to neuronal dendrites. Neuron 32, 463-475
-
(2001)
Neuron
, vol.32
, pp. 463-475
-
-
Tang, S.J.1
Meulemans, D.2
Vazquez, L.3
Colaco, N.4
Schuman, E.5
-
42
-
-
38649135371
-
A genomewide approach identifies distinct but overlapping subsets of cellular mRNAs associated with Staufen1- and Staufen2-containing ribonucleoprotein complexes
-
Furic, L., Maher-Laporte, M., and DesGroseillers, L. (2008) A genomewide approach identifies distinct but overlapping subsets of cellular mRNAs associated with Staufen1- and Staufen2-containing ribonucleoprotein complexes. RNA 14, 324-335
-
(2008)
RNA
, vol.14
, pp. 324-335
-
-
Furic, L.1
Maher-Laporte, M.2
Desgroseillers, L.3
-
43
-
-
79952151278
-
Mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans
-
Zhang, C., Montgomery, T. A., Gabel, H. W., Fischer, S. E., Phillips, C. M., Fahlgren, N., Sullivan, C. M., Carrington, J. C., and Ruvkun, G. (2011) mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans. Proc. Natl. Acad. Sci. U.S.A. 108, 1201-1208
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 1201-1208
-
-
Zhang, C.1
Montgomery, T.A.2
Gabel, H.W.3
Fischer, S.E.4
Phillips, C.M.5
Fahlgren, N.6
Sullivan, C.M.7
Carrington, J.C.8
Ruvkun, G.9
-
44
-
-
0025940629
-
The twohybrid system. A method to identify and clone genes for proteins that interact with a protein of interest
-
Chien, C. T., Bartel, P. L., Sternglanz, R., and Fields, S. (1991) The twohybrid system. A method to identify and clone genes for proteins that interact with a protein of interest. Proc. Natl. Acad. Sci. U.S.A. 88, 9578-9582
-
(1991)
Proc. Natl. Acad. Sci. U.S.A.
, vol.88
, pp. 9578-9582
-
-
Chien, C.T.1
Bartel, P.L.2
Sternglanz, R.3
Fields, S.4
-
45
-
-
12844273362
-
RNA-protein interactions in the yeast three-hybrid system. Affinity, sensitivity, and enhanced library screening
-
Hook, B., Bernstein, D., Zhang, B., and Wickens, M. (2005) RNA-protein interactions in the yeast three-hybrid system. Affinity, sensitivity, and enhanced library screening. RNA 11, 227-233
-
(2005)
RNA
, vol.11
, pp. 227-233
-
-
Hook, B.1
Bernstein, D.2
Zhang, B.3
Wickens, M.4
-
46
-
-
15444365620
-
Binding specificity and mRNA targets of a C elegans PUF protein, FBF-1
-
Bernstein, D., Hook, B., Hajarnavis, A., Opperman, L., and Wickens, M. (2005) Binding specificity and mRNA targets of a C. elegans PUF protein, FBF-1. RNA 11, 447-458
-
(2005)
RNA
, vol.11
, pp. 447-458
-
-
Bernstein, D.1
Hook, B.2
Hajarnavis, A.3
Opperman, L.4
Wickens, M.5
-
47
-
-
84861705421
-
Cooperativity in RNA-protein interactions. Global analysis of RNA binding specificity
-
Campbell, Z. T., Bhimsaria, D., Valley, C. T., Rodriguez-Martinez, J. A., Menichelli, E., Williamson, J. R., Ansari, A. Z., and Wickens, M. (2012) Cooperativity in RNA-protein interactions. Global analysis of RNA binding specificity. Cell Rep. 1, 570-581
-
(2012)
Cell Rep.
, vol.1
, pp. 570-581
-
-
Campbell, Z.T.1
Bhimsaria, D.2
Valley, C.T.3
Rodriguez-Martinez, J.A.4
Menichelli, E.5
Williamson, J.R.6
Ansari, A.Z.7
Wickens, M.8
-
48
-
-
44949231424
-
Analyzing real-time PCR data by the comparative C(T) method
-
Schmittgen, T. D., and Livak, K. J. (2008) Analyzing real-time PCR data by the comparative C(T) method. Nat. Protoc. 3, 1101-1108
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1101-1108
-
-
Schmittgen, T.D.1
Livak, K.J.2
-
49
-
-
0035941485
-
Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans
-
Timmons, L., Court, D. L., and Fire, A. (2001) Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans. Gene 263, 103-112
-
(2001)
Gene
, vol.263
, pp. 103-112
-
-
Timmons, L.1
Court, D.L.2
Fire, A.3
-
50
-
-
77649253620
-
Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C elegans soma
-
Gent, J. I., Lamm, A. T., Pavelec, D. M., Maniar, J. M., Parameswaran, P., Tao, L., Kennedy, S., and Fire, A. Z. (2010) Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C. elegans soma. Mol. Cell 37, 679-689
-
(2010)
Mol. Cell
, vol.37
, pp. 679-689
-
-
Gent, J.I.1
Lamm, A.T.2
Pavelec, D.M.3
Maniar, J.M.4
Parameswaran, P.5
Tao, L.6
Kennedy, S.7
Fire, A.Z.8
-
51
-
-
77951169802
-
Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs
-
Welker, N. C., Pavelec, D. M., Nix, D. A., Duchaine, T. F., Kennedy, S., and Bass, B. L. (2010) Dicer's helicase domain is required for accumulation of some, but not all, C. elegans endogenous siRNAs. RNA 16, 893-903
-
(2010)
RNA
, vol.16
, pp. 893-903
-
-
Welker, N.C.1
Pavelec, D.M.2
Nix, D.A.3
Duchaine, T.F.4
Kennedy, S.5
Bass, B.L.6
-
52
-
-
0345628581
-
Mammalian staufen is a double-stranded-RNA- and tubulin-binding protein which localizes to the rough endoplasmic reticulum
-
Wickham, L., Duchaîne, T., Luo, M., Nabi, I. R., and DesGroseillers, L. (1999) Mammalian staufen is a double-stranded-RNA- and tubulin-binding protein which localizes to the rough endoplasmic reticulum. Mol. Cell Biol. 19, 2220-2230
-
(1999)
Mol. Cell Biol.
, vol.19
, pp. 2220-2230
-
-
Wickham, L.1
Duchaîne, T.2
Luo, M.3
Nabi, I.R.4
Desgroseillers, L.5
-
53
-
-
1342346710
-
A conserved siRNA-degrading RNase negatively regulates RNA interference in Celegans
-
Kennedy, S., Wang, D., and Ruvkun, G. (2004) A conserved siRNA-degrading RNase negatively regulates RNA interference in C. elegans. Nature 427, 645-649
-
(2004)
Nature
, vol.427
, pp. 645-649
-
-
Kennedy, S.1
Wang, D.2
Ruvkun, G.3
-
54
-
-
77954711627
-
Enhanced neuronal RNAi in C elegans using SID-1
-
Calixto, A., Chelur, D., Topalidou, I., Chen, X., and Chalfie, M. (2010) Enhanced neuronal RNAi in C. elegans using SID-1. Nat. Methods 7, 554-559
-
(2010)
Nat. Methods
, vol.7
, pp. 554-559
-
-
Calixto, A.1
Chelur, D.2
Topalidou, I.3
Chen, X.4
Chalfie, M.5
-
55
-
-
33646501892
-
Diverse chromatin remodeling genes antagonize the Rb-involved SynMuv pathways in C elegans
-
Cui, M., Kim, E. B., and Han, M. (2006) Diverse chromatin remodeling genes antagonize the Rb-involved SynMuv pathways in C. elegans. PLoS Genet. 2, e74
-
(2006)
PLoS Genet
, vol.2
-
-
Cui, M.1
Kim, E.B.2
Han, M.3
-
56
-
-
47749119122
-
Proteomic analysis uncovers a metabolic phenotype in C elegans after nhr-40 reduction of function
-
Pohludka, M., Simeckova, K., Vohanka, J., Yilma, P., Novak, P., Krause, M. W., Kostrouchova, M., and Kostrouch, Z. (2008) Proteomic analysis uncovers a metabolic phenotype in C. elegans after nhr-40 reduction of function. Biochem. Biophys. Res. Commun. 374, 49-54
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.374
, pp. 49-54
-
-
Pohludka, M.1
Simeckova, K.2
Vohanka, J.3
Yilma, P.4
Novak, P.5
Krause, M.W.6
Kostrouchova, M.7
Kostrouch, Z.8
-
57
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher, V. G., Tibshirani, R., and Chu, G. (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. U.S.A. 98, 5116-5121
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
58
-
-
7044272280
-
Evidence for reassociation of RNA-binding proteins after cell lysis. Implications for the interpretation of immunoprecipitation analyses
-
Mili, S., and Steitz, J. A. (2004) Evidence for reassociation of RNA-binding proteins after cell lysis. Implications for the interpretation of immunoprecipitation analyses. RNA 10, 1692-1694
-
(2004)
RNA
, vol.10
, pp. 1692-1694
-
-
Mili, S.1
Steitz, J.A.2
-
59
-
-
3242683216
-
Gene expression profiling of cells, tissues, and developmental stages of the nematode C elegans
-
McKay, S. J., Johnsen, R., Khattra, J., Asano, J., Baillie, D. L., Chan, S., Dube, N., Fang, L., Goszczynski, B., Ha, E., Halfnight, E., Hollebakken, R., Huang, P., Hung, K., Jensen, V., Jones, S. J., Kai, H., Li, D., Mah, A., Marra, M., McGhee, J., Newbury, R., Pouzyrev, A., Riddle, D. L., Sonnhammer, E., Tian, H., Tu, D., Tyson, J. R., Vatcher, G., Warner, A., Wong, K., Zhao, Z., and Moerman, D. G. (2003) Gene expression profiling of cells, tissues, and developmental stages of the nematode C. elegans. Cold Spring Harb. Symp. Quant. Biol. 68, 159-169
-
(2003)
Cold Spring Harb. Symp. Quant. Biol.
, vol.68
, pp. 159-169
-
-
McKay, S.J.1
Johnsen, R.2
Khattra, J.3
Asano, J.4
Baillie, D.L.5
Chan, S.6
Dube, N.7
Fang, L.8
Goszczynski, B.9
Ha, E.10
Halfnight, E.11
Hollebakken, R.12
Huang, P.13
Hung, K.14
Jensen, V.15
Jones, S.J.16
Kai, H.17
Li, D.18
Mah, A.19
Marra, M.20
McGhee, J.21
Newbury, R.22
Pouzyrev, A.23
Riddle, D.L.24
Sonnhammer, E.25
Tian, H.26
Tu, D.27
Tyson, J.R.28
Vatcher, G.29
Warner, A.30
Wong, K.31
Zhao, Z.32
Moerman, D.G.33
more..
-
60
-
-
0037062438
-
RNA hairpins in noncoding regions of human brain and Caenorhabditis elegansmRNAare edited by adenosine deaminases that act on RNA
-
Morse, D. P., Aruscavage, P. J., and Bass, B. L. (2002) RNA hairpins in noncoding regions of human brain and Caenorhabditis elegansmRNAare edited by adenosine deaminases that act on RNA. Proc. Natl. Acad. Sci. U.S.A. 99, 7906-7911
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 7906-7911
-
-
Morse, D.P.1
Aruscavage, P.J.2
Bass, B.L.3
-
61
-
-
0038005018
-
David. database for annotation, visualization, and integrated discovery
-
Dennis, G., Jr., Sherman, B. T., Hosack, D. A., Yang, J., Gao, W., Lane, H. C., and Lempicki, R. A. (2003) DAVID. Database for Annotation, Visualization, and Integrated Discovery. Genome Biol. 4, P3
-
(2003)
Genome Biol
, vol.4
, pp. 3
-
-
Dennis Jr., G.1
Sherman, B.T.2
Hosack, D.A.3
Yang, J.4
Gao, W.5
Lane, H.C.6
Lempicki, R.A.7
-
62
-
-
0033523286
-
The polarisation of the anteriorposterior and dorsal-ventral axes during Drosophila oogenesis
-
van Eeden, F., and St Johnston, D. (1999) The polarisation of the anteriorposterior and dorsal-ventral axes during Drosophila oogenesis. Curr. Opin. Genet. Dev. 9, 396-404
-
(1999)
Curr. Opin. Genet. Dev.
, vol.9
, pp. 396-404
-
-
Van Eeden, F.1
St Johnston, D.2
-
63
-
-
34249977890
-
Staufen1 regulates diverse classes of mammalian transcripts
-
Kim, Y. K., Furic, L., Parisien, M., Major, F., DesGroseillers, L., and Maquat, L. E. (2007) Staufen1 regulates diverse classes of mammalian transcripts. EMBO J. 26, 2670-2681
-
(2007)
EMBO J.
, vol.26
, pp. 2670-2681
-
-
Kim, Y.K.1
Furic, L.2
Parisien, M.3
Major, F.4
Desgroseillers, L.5
Maquat, L.E.6
-
64
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
65
-
-
0037031152
-
Loss of the putative RNA-directed RNA polymerase RRF-3 makes Celegans hypersensitive to RNAi
-
Simmer, F., Tijsterman, M., Parrish, S., Koushika, S. P., Nonet, M. L., Fire, A., Ahringer, J., and Plasterk, R. H. (2002) Loss of the putative RNA-directed RNA polymerase RRF-3 makes C. elegans hypersensitive to RNAi. Curr. Biol. 12, 1317-1319
-
(2002)
Curr. Biol.
, vol.12
, pp. 1317-1319
-
-
Simmer, F.1
Tijsterman, M.2
Parrish, S.3
Koushika, S.P.4
Nonet, M.L.5
Fire, A.6
Ahringer, J.7
Plasterk, R.H.8
-
66
-
-
0025942107
-
Efficient gene transfer in C. elegans. Extrachromosomal maintenance and integration of transforming sequences
-
Mello, C. C., Kramer, J. M., Stinchcomb, D., and Ambros, V. (1991) Efficient gene transfer in C. elegans. Extrachromosomal maintenance and integration of transforming sequences. EMBO J. 10, 3959-3970
-
(1991)
EMBO J.
, vol.10
, pp. 3959-3970
-
-
Mello, C.C.1
Kramer, J.M.2
Stinchcomb, D.3
Ambros, V.4
-
67
-
-
71549147194
-
Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans
-
Pavelec, D. M., Lachowiec, J., Duchaine, T. F., Smith, H. E., and Kennedy, S. (2009) Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans. Genetics 183, 1283-1295
-
(2009)
Genetics
, vol.183
, pp. 1283-1295
-
-
Pavelec, D.M.1
Lachowiec, J.2
Duchaine, T.F.3
Smith, H.E.4
Kennedy, S.5
-
68
-
-
80455164552
-
Competition between ADAR and RNAi pathways for an extensive class ofRNAtargets
-
Wu, D., Lamm, A. T., and Fire, A. Z. (2011) Competition between ADAR and RNAi pathways for an extensive class ofRNAtargets. Nat. Struct. Mol. Biol. 18, 1094-1101
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 1094-1101
-
-
Wu, D.1
Lamm, A.T.2
Fire, A.Z.3
-
69
-
-
84862528937
-
Tobacco calmodulin-like protein provides secondary defense by binding to and directing degradation of virus RNA silencing suppressors
-
Nakahara, K. S., Masuta, C., Yamada, S., Shimura, H., Kashihara, Y., Wada, T. S., Meguro, A., Goto, K., Tadamura, K., Sueda, K., Sekiguchi, T., Shao, J., Itchoda, N., Matsumura, T., Igarashi, M., Ito, K., Carthew, R. W., and Uyeda, I. (2012) Tobacco calmodulin-like protein provides secondary defense by binding to and directing degradation of virus RNA silencing suppressors. Proc. Natl. Acad. Sci. U.S.A. 109, 10113-10118
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 10113-10118
-
-
Nakahara, K.S.1
Masuta, C.2
Yamada, S.3
Shimura, H.4
Kashihara, Y.5
Wada, T.S.6
Meguro, A.7
Goto, K.8
Tadamura, K.9
Sueda, K.10
Sekiguchi, T.11
Shao, J.12
Itchoda, N.13
Matsumura, T.14
Igarashi, M.15
Ito, K.16
Carthew, R.W.17
Uyeda, I.18
-
70
-
-
33744910840
-
Double-stranded RNA binding may be a general plant RNA viral strategy to suppress RNA silencing
-
Mérai, Z., Kerényi, Z., Kertész, S., Magna, M., Lakatos, L., and Silhavy, D. (2006) Double-stranded RNA binding may be a general plant RNA viral strategy to suppress RNA silencing. J. Virol. 80, 5747-5756
-
(2006)
J. Virol.
, vol.80
, pp. 5747-5756
-
-
Mérai, Z.1
Kerényi, Z.2
Kertész, S.3
Magna, M.4
Lakatos, L.5
Silhavy, D.6
-
71
-
-
79951495822
-
LncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3'-UTRs via Alu elements
-
Gong, C., and Maquat, L. E. (2011) lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3'-UTRs via Alu elements. Nature 470, 284-288
-
(2011)
Nature
, vol.470
, pp. 284-288
-
-
Gong, C.1
Maquat, L.E.2
-
72
-
-
0043123153
-
Vienna RNA secondary structure server
-
Hofacker, I. L. (2003) Vienna RNA secondary structure server. Nucleic Acids Res. 31, 3429-3431
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3429-3431
-
-
Hofacker, I.L.1
|