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Volumn 5, Issue 3, 2013, Pages 849-860

ADAR Regulates RNA Editing, Transcript Stability, and Gene Expression

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; ADENOSINE DEAMINASES ACTING ON RNA PROTEIN; CELL DNA; GUANINE; HUR PROTEIN; REGULATOR PROTEIN; SMALL INTERFERING RNA; UNCLASSIFIED DRUG; ADARB1 PROTEIN, HUMAN; ADENOSINE DEAMINASE; ELAVL1 PROTEIN, HUMAN; HU ANTIGEN; MESSENGER RNA; RNA; RNA BINDING PROTEIN;

EID: 84887617987     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2013.10.002     Document Type: Article
Times cited : (163)

References (53)
  • 2
    • 12344300804 scopus 로고    scopus 로고
    • Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome
    • Athanasiadis A., Rich A., Maas S. Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome. PLoS Biol. 2004, 2:e391.
    • (2004) PLoS Biol. , vol.2
    • Athanasiadis, A.1    Rich, A.2    Maas, S.3
  • 3
    • 84855320189 scopus 로고    scopus 로고
    • Accurate identification of A-to-I RNA editing in human by transcriptome sequencing
    • Bahn J.H., Lee J.-H., Li G., Greer C., Peng G., Xiao X. Accurate identification of A-to-I RNA editing in human by transcriptome sequencing. Genome Res. 2012, 22:142-150.
    • (2012) Genome Res. , vol.22 , pp. 142-150
    • Bahn, J.H.1    Lee, J.-H.2    Li, G.3    Greer, C.4    Peng, G.5    Xiao, X.6
  • 5
    • 0024233053 scopus 로고
    • An unwinding activity that covalently modifies its double-stranded RNA substrate
    • Bass B.L., Weintraub H. An unwinding activity that covalently modifies its double-stranded RNA substrate. Cell 1988, 55:1089-1098.
    • (1988) Cell , vol.55 , pp. 1089-1098
    • Bass, B.L.1    Weintraub, H.2
  • 8
    • 80055076214 scopus 로고    scopus 로고
    • Identification of widespread ultra-edited human RNAs
    • Carmi S., Borukhov I., Levanon E.Y. Identification of widespread ultra-edited human RNAs. PLoS Genet. 2011, 7:e1002317.
    • (2011) PLoS Genet. , vol.7
    • Carmi, S.1    Borukhov, I.2    Levanon, E.Y.3
  • 11
    • 0034078399 scopus 로고    scopus 로고
    • A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains
    • Chen C.X., Cho D.S., Wang Q., Lai F., Carter K.C., Nishikura K. A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains. RNA 2000, 6:755-767.
    • (2000) RNA , vol.6 , pp. 755-767
    • Chen, C.X.1    Cho, D.S.2    Wang, Q.3    Lai, F.4    Carter, K.C.5    Nishikura, K.6
  • 15
    • 70349283034 scopus 로고    scopus 로고
    • ADAR1 interacts with PKR during human immunodeficiency virus infection of lymphocytes and contributes to viral replication
    • Clerzius G., Gélinas J.-F., Daher A., Bonnet M., Meurs E.F., Gatignol A. ADAR1 interacts with PKR during human immunodeficiency virus infection of lymphocytes and contributes to viral replication. J.Virol. 2009, 83:10119-10128.
    • (2009) J.Virol. , vol.83 , pp. 10119-10128
    • Clerzius, G.1    Gélinas, J.-F.2    Daher, A.3    Bonnet, M.4    Meurs, E.F.5    Gatignol, A.6
  • 16
    • 84868106296 scopus 로고    scopus 로고
    • A distant cis acting intronic element induces site-selective RNA editing
    • Daniel C., Venø M.T., Ekdahl Y., Kjems J., Öhman M. A distant cis acting intronic element induces site-selective RNA editing. Nucleic Acids Res. 2012, 40:9876-9886.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 9876-9886
    • Daniel, C.1    Venø, M.T.2    Ekdahl, Y.3    Kjems, J.4    Öhman, M.5
  • 17
    • 1042289731 scopus 로고    scopus 로고
    • Structure and sequence determinants required for the RNA editing of ADAR2 substrates
    • Dawson T.R., Sansam C.L., Emeson R.B. Structure and sequence determinants required for the RNA editing of ADAR2 substrates. J.Biol. Chem. 2004, 279:4941-4951.
    • (2004) J.Biol. Chem. , vol.279 , pp. 4941-4951
    • Dawson, T.R.1    Sansam, C.L.2    Emeson, R.B.3
  • 18
    • 0032526427 scopus 로고    scopus 로고
    • Overexpression of HuR, a nuclear-cytoplasmic shuttling protein, increases the invivo stability of ARE-containing mRNAs
    • Fan X.C., Steitz J.A. Overexpression of HuR, a nuclear-cytoplasmic shuttling protein, increases the invivo stability of ARE-containing mRNAs. EMBO J. 1998, 17:3448-3460.
    • (1998) EMBO J. , vol.17 , pp. 3448-3460
    • Fan, X.C.1    Steitz, J.A.2
  • 21
    • 54949148332 scopus 로고    scopus 로고
    • Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system
    • Hogan D.J., Riordan D.P., Gerber A.P., Herschlag D., Brown P.O. Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol. 2008, 6:e255.
    • (2008) PLoS Biol. , vol.6
    • Hogan, D.J.1    Riordan, D.P.2    Gerber, A.P.3    Herschlag, D.4    Brown, P.O.5
  • 22
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4:44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 23
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of largegene lists
    • Huang W., Sherman B.T., Lempicki R.A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of largegene lists. Nucleic Acids Res. 2009, 37:1-13.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 24
    • 79960914208 scopus 로고    scopus 로고
    • Extensive genomic and transcriptional diversityidentified through massively parallel DNA and RNA sequencing of eighteen Korean individuals
    • Ju Y.S., Kim J.-I., Kim S., Hong D., Park H., Shin J.-Y., Lee S., Lee W.-C., Kim S., Yu S.-B., et al. Extensive genomic and transcriptional diversityidentified through massively parallel DNA and RNA sequencing of eighteen Korean individuals. Nat. Genet. 2011, 43:745-752.
    • (2011) Nat. Genet. , vol.43 , pp. 745-752
    • Ju, Y.S.1    Kim, J.-I.2    Kim, S.3    Hong, D.4    Park, H.5    Shin, J.-Y.6    Lee, S.7    Lee, W.-C.8    Kim, S.9    Yu, S.-B.10
  • 25
    • 0027972952 scopus 로고
    • Molecular cloning of cDNA for double-stranded RNA adenosine deaminase, a candidate enzyme for nuclear RNA editing
    • Kim U., Wang Y., Sanford T., Zeng Y., Nishikura K. Molecular cloning of cDNA for double-stranded RNA adenosine deaminase, a candidate enzyme for nuclear RNA editing. Proc. Natl. Acad. Sci. USA 1994, 91:11457-11461.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 11457-11461
    • Kim, U.1    Wang, Y.2    Sanford, T.3    Zeng, Y.4    Nishikura, K.5
  • 27
    • 77954505224 scopus 로고    scopus 로고
    • DARNED: a DAtabase of RNa EDiting in humans
    • Kiran A., Baranov P.V. DARNED: a DAtabase of RNa EDiting in humans. Bioinformatics 2010, 26:1772-1776.
    • (2010) Bioinformatics , vol.26 , pp. 1772-1776
    • Kiran, A.1    Baranov, P.V.2
  • 28
    • 79959813870 scopus 로고    scopus 로고
    • A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins
    • Kishore S., Jaskiewicz L., Burger L., Hausser J., Khorshid M., Zavolan M. A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins. Nat. Methods 2011, 8:559-564.
    • (2011) Nat. Methods , vol.8 , pp. 559-564
    • Kishore, S.1    Jaskiewicz, L.2    Burger, L.3    Hausser, J.4    Khorshid, M.5    Zavolan, M.6
  • 29
    • 0037705633 scopus 로고    scopus 로고
    • Biochemical analysis and scanning force microscopy reveal productive and nonproductive ADAR2 binding to RNA substrates
    • Klaue Y., Källman A.M., Bonin M., Nellen W., Ohman M. Biochemical analysis and scanning force microscopy reveal productive and nonproductive ADAR2 binding to RNA substrates. RNA 2003, 9:839-846.
    • (2003) RNA , vol.9 , pp. 839-846
    • Klaue, Y.1    Källman, A.M.2    Bonin, M.3    Nellen, W.4    Ohman, M.5
  • 30
    • 84870344968 scopus 로고    scopus 로고
    • Mechanistic insights into editing-site specificity of ADARs
    • Kuttan A., Bass B.L. Mechanistic insights into editing-site specificity of ADARs. Proc. Natl. Acad. Sci. USA 2012, 109:E3295-E3304.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109
    • Kuttan, A.1    Bass, B.L.2
  • 31
    • 4143122397 scopus 로고    scopus 로고
    • Concurrent versus individual binding of HuR and AUF1 to common labile target mRNAs
    • Lal A., Mazan-Mamczarz K., Kawai T., Yang X., Martindale J.L., Gorospe M. Concurrent versus individual binding of HuR and AUF1 to common labile target mRNAs. EMBO J. 2004, 23:3092-3102.
    • (2004) EMBO J. , vol.23 , pp. 3092-3102
    • Lal, A.1    Mazan-Mamczarz, K.2    Kawai, T.3    Yang, X.4    Martindale, J.L.5    Gorospe, M.6
  • 33
    • 0034711082 scopus 로고    scopus 로고
    • Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities
    • Lehmann K.A., Bass B.L. Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities. Biochemistry 2000, 39:12875-12884.
    • (2000) Biochemistry , vol.39 , pp. 12875-12884
    • Lehmann, K.A.1    Bass, B.L.2
  • 37
    • 72849106592 scopus 로고    scopus 로고
    • RNA processing and its regulation: global insights into biological networks
    • Licatalosi D.D., Darnell R.B. RNA processing and its regulation: global insights into biological networks. Nat. Rev. Genet. 2010, 11:75-87.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 75-87
    • Licatalosi, D.D.1    Darnell, R.B.2
  • 38
    • 0037041395 scopus 로고    scopus 로고
    • An extensive network of coupling among gene expression machines
    • Maniatis T., Reed R. An extensive network of coupling among gene expression machines. Nature 2002, 416:499-506.
    • (2002) Nature , vol.416 , pp. 499-506
    • Maniatis, T.1    Reed, R.2
  • 40
    • 0030933006 scopus 로고    scopus 로고
    • Identification of HuR as a protein implicated in AUUUA-mediated mRNA decay
    • Myer V.E., Fan X.C., Steitz J.A. Identification of HuR as a protein implicated in AUUUA-mediated mRNA decay. EMBO J. 1997, 16:2130-2139.
    • (1997) EMBO J. , vol.16 , pp. 2130-2139
    • Myer, V.E.1    Fan, X.C.2    Steitz, J.A.3
  • 41
    • 23344449390 scopus 로고    scopus 로고
    • ADAR1 interacts with NF90 through double-stranded RNA and regulates NF90-mediated gene expression independently of RNA editing
    • Nie Y., Ding L., Kao P.N., Braun R., Yang J.-H. ADAR1 interacts with NF90 through double-stranded RNA and regulates NF90-mediated gene expression independently of RNA editing. Mol. Cell. Biol. 2005, 25:6956-6963.
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 6956-6963
    • Nie, Y.1    Ding, L.2    Kao, P.N.3    Braun, R.4    Yang, J.-H.5
  • 42
    • 69049093856 scopus 로고    scopus 로고
    • Widespread cleavage of A-to-I hyperediting substrates
    • Osenberg S., Dominissini D., Rechavi G., Eisenberg E. Widespread cleavage of A-to-I hyperediting substrates. RNA 2009, 15:1632-1639.
    • (2009) RNA , vol.15 , pp. 1632-1639
    • Osenberg, S.1    Dominissini, D.2    Rechavi, G.3    Eisenberg, E.4
  • 44
    • 0023651359 scopus 로고
    • A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine
    • Powell L.M., Wallis S.C., Pease R.J., Edwards Y.H., Knott T.J., Scott J. A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine. Cell 1987, 50:831-840.
    • (1987) Cell , vol.50 , pp. 831-840
    • Powell, L.M.1    Wallis, S.C.2    Pease, R.J.3    Edwards, Y.H.4    Knott, T.J.5    Scott, J.6
  • 45
    • 84863814454 scopus 로고    scopus 로고
    • Nascent-seq indicates widespread cotranscriptional RNA editing in Drosophila
    • Rodriguez J., Menet J.S., Rosbash M. Nascent-seq indicates widespread cotranscriptional RNA editing in Drosophila. Mol. Cell 2012, 47:27-37.
    • (2012) Mol. Cell , vol.47 , pp. 27-37
    • Rodriguez, J.1    Menet, J.S.2    Rosbash, M.3
  • 46
    • 0028961902 scopus 로고
    • Glutamate receptor RNA editing invitro by enzymatic conversion of adenosine to inosine
    • Rueter S.M., Burns C.M., Coode S.A., Mookherjee P., Emeson R.B. Glutamate receptor RNA editing invitro by enzymatic conversion of adenosine to inosine. Science 1995, 267:1491-1494.
    • (1995) Science , vol.267 , pp. 1491-1494
    • Rueter, S.M.1    Burns, C.M.2    Coode, S.A.3    Mookherjee, P.4    Emeson, R.B.5
  • 47
    • 0035422052 scopus 로고    scopus 로고
    • Specific cleavage of hyper-edited dsRNAs
    • Scadden A.D., Smith C.W. Specific cleavage of hyper-edited dsRNAs. EMBO J. 2001, 20:4243-4252.
    • (2001) EMBO J. , vol.20 , pp. 4243-4252
    • Scadden, A.D.1    Smith, C.W.2
  • 50
    • 0034974268 scopus 로고    scopus 로고
    • Substrate recognition by ADAR1 and ADAR2
    • Wong S.K., Sato S., Lazinski D.W. Substrate recognition by ADAR1 and ADAR2. RNA 2001, 7:846-858.
    • (2001) RNA , vol.7 , pp. 846-858
    • Wong, S.K.1    Sato, S.2    Lazinski, D.W.3
  • 51
    • 80455164552 scopus 로고    scopus 로고
    • Competition between ADAR and RNAi pathways for an extensive class of RNA targets
    • Wu D., Lamm A.T., Fire A.Z. Competition between ADAR and RNAi pathways for an extensive class of RNA targets. Nat. Struct. Mol. Biol. 2011, 18:1094-1101.
    • (2011) Nat. Struct. Mol. Biol. , vol.18 , pp. 1094-1101
    • Wu, D.1    Lamm, A.T.2    Fire, A.Z.3
  • 52
    • 0028799677 scopus 로고
    • Editing of glutamate receptor subunit B pre-mRNA invitro by site-specific deamination of adenosine
    • Yang J.H., Sklar P., Axel R., Maniatis T. Editing of glutamate receptor subunit B pre-mRNA invitro by site-specific deamination of adenosine. Nature 1995, 374:77-81.
    • (1995) Nature , vol.374 , pp. 77-81
    • Yang, J.H.1    Sklar, P.2    Axel, R.3    Maniatis, T.4


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