-
1
-
-
0035997389
-
RNA editing by adenosine deaminases that act on RNA
-
DOI 10.1146/annurev.biochem.71.110601.135501
-
Bass, B. L. RNA editing by adenosine deaminases that act on RNA. A nnu. Rev. Biochem. 7 1, 817-846 ( 2002). (Pubitemid 34800236)
-
(2002)
Annual Review of Biochemistry
, vol.71
, pp. 817-846
-
-
Bass, B.L.1
-
2
-
-
77954313452
-
ADAR editing in double-stranded UTRs and other noncoding RNA sequences
-
Hundley, H. A. & Bass, B. L. ADAR editing in double-stranded UTRs and other noncoding RNA sequences. Trends Biochem. Sci. 35, 377-383 ( 2010).
-
(2010)
Trends Biochem. Sci.
, vol.35
, pp. 377-383
-
-
Hundley, H.A.1
Bass, B.L.2
-
3
-
-
77952293063
-
Functions and regulation of RNA editing by ADAR deaminases
-
Nishikura, K. Functions and regulation of RNA editing by ADAR deaminases. Annu. Rev. Biochem. 79, 321-349 ( 2010).
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 321-349
-
-
Nishikura, K.1
-
4
-
-
3543004084
-
Systematic identification of abundant A-to-I editing sites in the human transcriptome
-
DOI 10.1038/nbt996
-
Levanon, E. Y. et al. Systematic identifi cation of abundant A-to-I editing sites in the human transcriptome. Nat. Biotechnol. 22, 1001-1005 ( 2004). (Pubitemid 39014477)
-
(2004)
Nature Biotechnology
, vol.22
, Issue.8
, pp. 1001-1005
-
-
Levanon, E.Y.1
Eisenberg, E.2
Yelin, R.3
Nemzer, S.4
Hallegger, M.5
Shemesh, R.6
Fligelman, Z.Y.7
Shoshan, A.8
Pollock, S.R.9
Sztybel, D.10
Olshansky, M.11
Rechavi, G.12
Jantsch, M.F.13
-
5
-
-
66349122954
-
Genome-wide identifi cation of human RNA editing sites by parallel DNA capturing and sequencing
-
Li, J. B. et al. Genome-wide identifi cation of human RNA editing sites by parallel DNA capturing and sequencing. S cience 3 24, 1210-1213 ( 2009).
-
(2009)
Science
, vol.3
, Issue.24
, pp. 1210-1213
-
-
Li, J.B.1
-
6
-
-
0030916712
-
Regulation of serotonin-2C receptor G-protein coupling by RNA editing
-
DOI 10.1038/387303a0
-
Burns, C. M. et al. Regulation of serotonin-2C receptor G-protein coupling by RNA editing. Nature 387, 303-308 ( 1997). (Pubitemid 27220768)
-
(1997)
Nature
, vol.387
, Issue.6630
, pp. 303-308
-
-
Burns, C.M.1
Chu, H.2
Rueter, S.M.3
Hutchinson, L.K.4
Canton, H.5
Sanders-Bush, E.6
Emeson, R.B.7
-
7
-
-
33749614155
-
A-to-I pre-mRNA editing of the serotonin 2C receptor: Comparisons among inbred mouse strains
-
DOI 10.1016/j.gene.2006.06.007, PII S0378111906003817
-
Du, Y., Davisson, M. T., Kafadar, K. & Gardiner, K. A-to-I pre-mRNA editing of the serotonin 2C receptor: comparisons among inbred mouse strains. Gene 382, 39-46 ( 2006). (Pubitemid 44548253)
-
(2006)
Gene
, vol.382
, pp. 39-46
-
-
Du, Y.1
Davisson, M.T.2
Kafadar, K.3
Gardiner, K.4
-
8
-
-
33847007668
-
Early life stress alters adult serotonin 2C receptor pre-mRNA editing and expression of the alpha subunit of the heterotrimeric G-protein G q
-
Bhansali, P., Dunning, J., Singer, S. E., David, L. & Schmauss, C. Early life stress alters adult serotonin 2C receptor pre-mRNA editing and expression of the alpha subunit of the heterotrimeric G-protein G q. J. Neurosci. 2 7, 1467-1473 ( 2007).
-
(2007)
J. Neurosci.
, vol.2
, Issue.7
, pp. 1467-1473
-
-
Bhansali, P.1
Dunning, J.2
Singer, S.E.3
David, L.4
Schmauss, C.5
-
9
-
-
0037171846
-
Altered editing of serotonin 2C receptor pre-mRNA in the prefrontal cortex of depressed suicide victims
-
DOI 10.1016/S0896-6273(02)00660-8
-
Gurevich, I. et al. Altered editing of serotonin 2C receptor pre-mRNA in the prefrontal cortex of depressed suicide victims. Neuron 3 4, 349-356 ( 2002). (Pubitemid 34465494)
-
(2002)
Neuron
, vol.34
, Issue.3
, pp. 349-356
-
-
Gurevich, I.1
Tamir, H.2
Arango, V.3
Dwork, A.J.4
Mann, J.J.5
Schmauss, C.6
-
10
-
-
54349084037
-
A-to-I RNA editing and cancer: From pathology to basic science
-
Gallo, A. & Galardi, S. A-to-I RNA editing and cancer: from pathology to basic science. R NA Biol. 5, 135-139 ( 2008).
-
(2008)
R NA Biol.
, vol.5
, pp. 135-139
-
-
Gallo, A.1
Galardi, S.2
-
11
-
-
34250624128
-
How does RNA editing aff ect dsRNA-mediated gene silencing
-
Bass, B. L. How does RNA editing aff ect dsRNA-mediated gene silencing? Cold Spring Harb. Symp. Quant. Biol. 71, 285-292 ( 2006).
-
(2006)
Cold Spring Harb. Symp. Quant. Biol.
, vol.71
, pp. 285-292
-
-
Bass, B.L.1
-
12
-
-
33847317017
-
Redirection of silencing targets by adenosine-to-inosine editing of miRNAs
-
DOI 10.1126/science.1138050
-
Kawahara, Y. et al. Redirection of silencing targets by adenosine-to-inosine editing of miRNAs. Science 3 15, 1137-1140 ( 2007). (Pubitemid 46328026)
-
(2007)
Science
, vol.315
, Issue.5815
, pp. 1137-1140
-
-
Kawahara, Y.1
Zinshteyn, B.2
Sethupathy, P.3
Iizasa, H.4
Hatzigeorgiou, A.G.5
Nishikura, K.6
-
13
-
-
33845315229
-
Editor meets silencer: Crosstalk between RNA editing and RNA interference
-
DOI 10.1038/nrm2061, PII NRM2061
-
Nishikura, K. Editor meets silencer: crosstalk between RNA editing and RNA interference. N at. Rev. Mol. Cell Biol. 7, 919-931 ( 2006). (Pubitemid 44871418)
-
(2006)
Nature Reviews Molecular Cell Biology
, vol.7
, Issue.12
, pp. 919-931
-
-
Nishikura, K.1
-
14
-
-
24644519954
-
Structural biology: Inositol hexakisphosphate is bound in the ADAR2 core and required for RNA editing
-
DOI 10.1126/science.1113150
-
Macbeth, M. R. et al. Inositol hexakisphosphate is bound in the ADAR2 core and required for RNA editing. Science 309, 1534-1539 ( 2005). (Pubitemid 41266474)
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1534-1539
-
-
Macbeth, M.R.1
Schubert, H.L.2
VanDemark, A.F.3
Lingam, A.T.4
Hill, C.P.5
Bass, B.L.6
-
15
-
-
77957822421
-
Th e solution structure of the ADAR2 dsRBM-RNA complex reveals a sequence-specifi c readout of the minor groove
-
Stefl, R. et al. Th e solution structure of the ADAR2 dsRBM-RNA complex reveals a sequence-specifi c readout of the minor groove. C ell 1 43, 225-237 ( 2010).
-
(2010)
Cell
, vol.1
, Issue.43
, pp. 225-237
-
-
Stefl, R.1
-
16
-
-
32044468729
-
Structure and specific RNA binding of ADAR2 double-stranded RNA binding motifs
-
DOI 10.1016/j.str.2005.11.013, PII S096921260600044X
-
Stefl, R., Xu, M., Skrisovska, L., Emeson, R. B. & Allain, F. H. Structure and specifi c RNA binding of ADAR2 double-stranded RNA binding motifs. Structure 14, 345-355 ( 2006). (Pubitemid 43202023)
-
(2006)
Structure
, vol.14
, Issue.2
, pp. 345-355
-
-
Stefl, R.1
Xu, M.2
Skrisovska, L.3
Emeson, R.B.4
Allain, F.H.-T.5
-
17
-
-
0027967784
-
Preferential selection of adenosines for modification by double-stranded RNA adenosine deaminase
-
Polson, A. G. & Bass, B. L. Preferential selection of adenosines for modifi cation by double-stranded RNA adenosine deaminase. EMBO J. 1 3, 5701-5711 ( 1994). (Pubitemid 24363038)
-
(1994)
EMBO Journal
, vol.13
, Issue.23
, pp. 5701-5711
-
-
Polson, A.G.1
Bass, B.L.2
-
18
-
-
0034711082
-
Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specifi cities
-
Lehmann, K. A. & Bass, B. L. Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specifi cities. Biochemistry 3 9, 12875-12884 ( 2000).
-
(2000)
Biochemistry
, vol.3
, Issue.9
, pp. 12875-12884
-
-
Lehmann, K.A.1
Bass, B.L.2
-
19
-
-
0030914301
-
RNA editing and hypermutation by adenosine deamination
-
DOI 10.1016/S0968-0004(97)01035-9, PII S0968000497010359
-
Bass, B. L. RNA editing and hypermutation by adenosine deamination. Trends Biochem. Sci. 2 2, 157-162 ( 1997). (Pubitemid 27199315)
-
(1997)
Trends in Biochemical Sciences
, vol.22
, Issue.5
, pp. 157-162
-
-
Bass, B.L.1
-
20
-
-
0344035669
-
The importance of internal loops within RNA substrates of ADAR1
-
DOI 10.1006/jmbi.1999.2914
-
Lehmann, K. A. & Bass, B. L. Th e importance of internal loops within RNA substrates of ADAR1. J. Mol. Biol. 2 91, 1-13 ( 1999). (Pubitemid 29391401)
-
(1999)
Journal of Molecular Biology
, vol.291
, Issue.1
, pp. 1-13
-
-
Lehmann, K.A.1
Bass, B.L.2
-
21
-
-
4644234057
-
The binding selectivity of ADAR2's dsRBMs contributes to RNA-editing selectivity
-
DOI 10.1016/j.chembiol.2004.06.009, PII S1074552104002200
-
Stephens, O. M., Haudenschild, B. L. & Beal, P. A. Th e binding selectivity of ADAR2's dsRBMs contributes to RNA-editing selectivity. Chem. Biol. 1 1, 1239-1250 ( 2004). (Pubitemid 39282799)
-
(2004)
Chemistry and Biology
, vol.11
, Issue.9
, pp. 1239-1250
-
-
Stephens, O.M.1
Haudenschild, B.L.2
Beal, P.A.3
-
22
-
-
34548562454
-
Purifi cation and assay of ADAR activity
-
Keegan, L. P., Rosenthal, J. J., Roberson, L. M. & O 'Connell, M. A. Purifi cation and assay of ADAR activity. Methods Enzymol. 4 24, 301-317 ( 2007).
-
(2007)
Methods Enzymol.
, vol.4
, Issue.24
, pp. 301-317
-
-
Keegan, L.P.1
Rosenthal, J.J.2
Roberson, L.M.3
O'Connell, M.A.4
-
23
-
-
0037492813
-
Fluorescent dye terminator sequencing methods for quantitative determination of replication fitness of human immunodeficiency virus type 1 containing the codon 74 and 184 mutations in reverse transcriptase
-
DOI 10.1128/JCM.41.7.3306-3311.2003
-
Nurpeisov, V., Hurwitz, S. J. & Sharma, P. L. Fluorescent dye terminator sequencing methods for quantitative determination of replication fi tness of human immunodefi ciency virus type 1 containing the codon 74 and 184 mutations in reverse transcriptase. J. Clin. Microbiol. 4 1, 3306-3311 ( 2003). (Pubitemid 36842337)
-
(2003)
Journal of Clinical Microbiology
, vol.41
, Issue.7
, pp. 3306-3311
-
-
Nurpeisov, V.1
Hurwitz, S.J.2
Sharma, P.L.3
-
24
-
-
44149094073
-
Specificity of ADAR-mediated RNA editing in newly identified targets
-
DOI 10.1261/rna.923308
-
Riedmann, E. M., Schopoff, S., Hartner, J. C. & Jantsch, M. F. Specifi city of ADAR-mediated RNA editing in newly identifi ed targets. RNA 1 4, 1110-1118 ( 2008). (Pubitemid 351717491)
-
(2008)
RNA
, vol.14
, Issue.6
, pp. 1110-1118
-
-
Riedmann, E.M.1
Schopoff, S.2
Hartner, J.C.3
Jantsch, M.F.4
-
25
-
-
33745622868
-
Two Sample Logo: A graphical representation of the differences between two sets of sequence alignments
-
DOI 10.1093/bioinformatics/btl151
-
Vacic, V., Iakoucheva, L. M. & Radivojac, P. Two Sample Logo: a graphical representation of the diff erences between two sets of sequence alignments. Bioinformatics 2 2, 1536-1537 ( 2006). (Pubitemid 43985328)
-
(2006)
Bioinformatics
, vol.22
, Issue.12
, pp. 1536-1537
-
-
Vacic, V.1
Iakoucheva, L.M.2
Radivojac, P.3
-
26
-
-
0029940185
-
RNA editing of hepatitis delta virus antigenome by dsRNA-adenosine deaminase
-
DOI 10.1038/380454a0
-
Polson, A. G., Bass, B. L. & Casey, J. L. RNA editing of hepatitis delta virus antigenome by dsRNA-adenosine deaminase. Nature 3 80, 454-456 ( 1996). (Pubitemid 26102724)
-
(1996)
Nature
, vol.380
, Issue.6573
, pp. 454-456
-
-
Polson, A.G.1
Bass, B.L.2
Casey, J.L.3
-
27
-
-
0034612640
-
Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2
-
DOI 10.1038/35017558
-
Higuchi, M. et al. Point mutation in an AMPA receptor gene rescues lethality in mice defi cient in the RNA-editing enzyme ADAR2. Nature 4 06, 78-81 ( 2000). (Pubitemid 30460214)
-
(2000)
Nature
, vol.406
, Issue.6791
, pp. 78-81
-
-
Higuchi, M.1
Maas, S.2
Single, F.N.3
Hartner, J.4
Rozov, A.5
Burnashev, N.6
Feldmeyer, D.7
Sprengel, R.8
Seeburg, P.H.9
-
28
-
-
1942517473
-
2C receptor induced by interferon: Implications for depression associated with cytokine therapy
-
DOI 10.1016/j.molbrainres.2004.02.010, PII S0169328X04000877
-
Yang, W., Wang, Q., Kanes, S. J., Murray, J. M. & Nishikura, K. Altered RNA editing of serotonin 5-HT2C receptor induced by interferon: implications for depression associated with cytokine therapy. B rain Res. Mol. Brain Res. 1 24, 70-78 ( 2004). (Pubitemid 38496275)
-
(2004)
Molecular Brain Research
, vol.124
, Issue.1
, pp. 70-78
-
-
Yang, W.1
Wang, Q.2
Kanes, S.J.3
Murray, J.M.4
Nishikura, K.5
-
29
-
-
1042278125
-
Liver disintegration in the mouse embryo caused by deficiency in the RNA-editing enzyme ADAR1
-
DOI 10.1074/jbc.M311347200
-
Hartner, J. C. et al. Liver disintegration in the mouse embryo caused by defi ciency in the RNA-editing enzyme ADAR1. J. Biol. Chem. 2 79, 4894-4902 ( 2004). (Pubitemid 38199085)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.6
, pp. 4894-4902
-
-
Hartner, J.C.1
Schmittwolf, C.2
Kispert, A.3
Muller, A.M.4
Higuchi, M.5
Seeburg, P.H.6
-
30
-
-
2342460272
-
Evidence that RNA editing modulates splice site selection in the 5-HT2C receptor gene
-
DOI 10.1093/nar/gkh536
-
Flomen, R., Knight, J., Sham, P., Kerwin, R. & Makoff, A. Evidence that RNA editing modulates splice site selection in the 5-HT2C receptor gene. Nucleic Acids Res. 32, 2113-2122 ( 2004). (Pubitemid 38864685)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.7
, pp. 2113-2122
-
-
Flomen, R.1
Knight, J.2
Sham, P.3
Kerwin, R.4
Makoff, A.5
-
31
-
-
0034974268
-
Substrate recognition by ADAR1 and ADAR2
-
DOI 10.1017/S135583820101007X
-
Wong, S. K., Sato, S. & Lazinski, D. W. Substrate recognition by ADAR1 and ADAR2. RNA 7, 846-858 ( 2001). (Pubitemid 32552872)
-
(2001)
RNA
, vol.7
, Issue.6
, pp. 846-858
-
-
Wong, S.K.1
Sato, S.2
Lazinski, D.W.3
-
32
-
-
0032956724
-
A minor fraction of basic fibroblast growth factor mRNA is deaminated in Xenopus stage VI and matured oocytes
-
DOI 10.1017/S1355838299981335
-
Saccomanno, L. & Bass, B. L. A minor fraction of basic fi broblast growth factor mRNA is deaminated in Xenopus stage VI and matured oocytes. RNA 5, 39-48 ( 1999). (Pubitemid 29036119)
-
(1999)
RNA
, vol.5
, Issue.1
, pp. 39-48
-
-
Saccomanno, L.1
Bass, B.L.2
-
33
-
-
0036810232
-
The role of RNA editing by ADARs in RNAi
-
DOI 10.1016/S1097-2765(02)00649-4
-
Knight, S. W. & Bass, B. L. Th e role of RNA editing by ADARs in RNAi. Mol. Cell 1 0, 809-817 ( 2002). (Pubitemid 35335636)
-
(2002)
Molecular Cell
, vol.10
, Issue.4
, pp. 809-817
-
-
Knight, S.W.1
Bass, B.L.2
-
34
-
-
0023870174
-
DNA supercoiling
-
Giaever, G. N., Snyder, L. & Wang, J. C. DNA supercoiling i n vivo. B iophys. Chem. 2 9, 7-15 ( 1988).
-
(1988)
Vivo. Biophys. Chem.
, vol.2
, Issue.9
, pp. 7-15
-
-
Giaever, G.N.1
Snyder, L.2
Wang, J.C.3
-
35
-
-
0345721398
-
-
PhD University of Utah
-
Ley, H. L. III PhD D issertation ( University of Utah, 2001).
-
(2001)
Dissertation
-
-
Ley, H.L.1
-
36
-
-
34548594092
-
Large-scale overexpression and purifi cation of ADARs from Saccharomyces cerevisiae for biophysical and biochemical studies
-
Macbeth, M. R. & Bass, B. L. Large-scale overexpression and purifi cation of ADARs from Saccharomyces cerevisiae for biophysical and biochemical studies. Methods Enzymol. 4 24, 319-331 ( 2007).
-
(2007)
Methods Enzymol.
, vol.4
, Issue.24
, pp. 319-331
-
-
Macbeth, M.R.1
Bass, B.L.2
-
37
-
-
0033551050
-
Human RNA-specific adenosine deaminase ADAR1 transcripts possess alternative exon 1 structures that initiate from different promoters, one constitutively active and the other interferon inducible
-
DOI 10.1073/pnas.96.8.4621
-
George, C. X. & Samuel, C. E. Human RNA-specifi c adenosine deaminase ADAR1 transcripts possess alternative exon 1 structures that initiate from diff erent promoters, one constitutively active and the other interferon inducible. P roc. Natl Acad. Sci. USA 9 6, 4621-4626 ( 1999). (Pubitemid 29190386)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.8
, pp. 4621-4626
-
-
George, C.X.1
Samuel, C.E.2
-
38
-
-
0023666074
-
A developmentally regulated activity that unwinds RNA duplexes
-
Bass, B. L. & Weintraub, H. A developmentally regulated activity that unwinds RNA duplexes. Cell 48, 607-613 ( 1987).
-
(1987)
Cell
, vol.48
, pp. 607-613
-
-
Bass, B.L.1
Weintraub, H.2
-
39
-
-
38749146474
-
Predicting ultraviolet spectrum of single stranded and double stranded deoxyribonucleic acids
-
Tataurov, A. V., You, Y. & Owczarzy, R. Predicting ultraviolet spectrum of single stranded and double stranded deoxyribonucleic acids. Biophys. Chem. 1 33, 66-70 ( 2008).
-
(2008)
Biophys. Chem.
, vol.1
, Issue.33
, pp. 66-70
-
-
Tataurov, A.V.1
You, Y.2
Owczarzy, R.3
-
40
-
-
4644339417
-
Evidence for auto-inhibition by the N terminus of hADAR2 and activation by dsRNA binding
-
DOI 10.1261/rna.7920904
-
Macbeth, M. R., Lingam, A. T. & Bass, B. L. Evidence for auto-inhibition by the N terminus of hADAR2 and activation by dsRNA binding. RNA 10, 1563-1571 ( 2004). (Pubitemid 39288191)
-
(2004)
RNA
, vol.10
, Issue.10
, pp. 1563-1571
-
-
Macbeth, M.R.1
Lingam, A.T.2
Bass, B.L.3
-
41
-
-
0028228507
-
Purification of the Xenopus laevis double-stranded RNA adenosine deaminase
-
Hough, R. F. & Bass, B. L. Purifi cation of the Xenopus laevis double-stranded RNA adenosine deaminase. J. Biol. Chem. 269, 9933-9939 ( 1994). (Pubitemid 24196605)
-
(1994)
Journal of Biological Chemistry
, vol.269
, Issue.13
, pp. 9933-9939
-
-
Hough, R.F.1
Bass, B.L.2
-
42
-
-
0000536634
-
A new formula for predicting the shrinkage of the coeffi cient of multiple correlation
-
Wherry, R. J. A new formula for predicting the shrinkage of the coeffi cient of multiple correlation. A nn. Math. Stat. 2, 440-457 ( 1931).
-
(1931)
Ann. Math. Stat.
, vol.2
, pp. 440-457
-
-
Wherry, R.J.1
-
43
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
DOI 10.1006/jmbi.1999.2700
-
Mathews, D. H., Sabina, J., Zuker, M. & Turner, D. H. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288, 911-940 ( 1999). (Pubitemid 29248642)
-
(1999)
Journal of Molecular Biology
, vol.288
, Issue.5
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
44
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
DOI 10.1093/nar/gkg595
-
Zuker, M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415 ( 2003). (Pubitemid 37442169)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3406-3415
-
-
Zuker, M.1
|