메뉴 건너뛰기




Volumn 111, Issue 11, 2014, Pages 4019-4024

Hydroxylation of the eukaryotic ribosomal decoding center affects translational accuracy

Author keywords

2 oxoglutarate oxygenase; Hypoxia; Nonsense readthrough; Ribosomal hydroxylation; Translation

Indexed keywords

AMINO ACID; CELL PROTEIN; INITIATION FACTOR 5A; MESSENGER RNA; OXYGENASE; PROCOLLAGEN PROLINE 2 OXOGLUTARATE 4 DIOXYGENASE; RIBOSOMAL PROTEIN RPS23P; RIBOSOME PROTEIN; SHORT HAIRPIN RNA; TRANSLATION TERMINATION FACTOR; UNCLASSIFIED DRUG;

EID: 84896519650     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1311750111     Document Type: Article
Times cited : (99)

References (44)
  • 2
    • 78650864017 scopus 로고    scopus 로고
    • Physiological and biochemical aspects of hydroxylations and demethylations catalyzed by human 2-oxoglutarate oxygenases
    • Loenarz C, Schofield CJ (2011) Physiological and biochemical aspects of hydroxylations and demethylations catalyzed by human 2-oxoglutarate oxygenases. Trends Biochem Sci 36(1):7-18.
    • (2011) Trends Biochem Sci , vol.36 , Issue.1 , pp. 7-18
    • Loenarz, C.1    Schofield, C.J.2
  • 6
    • 78650887484 scopus 로고    scopus 로고
    • The hypoxia-inducible transcription factor pathway regulates oxygen sensing in the simplest animal, trichoplax adhaerens
    • Loenarz C, et al. (2011) The hypoxia-inducible transcription factor pathway regulates oxygen sensing in the simplest animal, Trichoplax adhaerens. EMBO Rep 12(1):63-70.
    • (2011) EMBO Rep , vol.12 , Issue.1 , pp. 63-70
    • Loenarz, C.1
  • 7
    • 67650072604 scopus 로고    scopus 로고
    • Jmjd6 catalyses lysyl-hydroxylation of u2af65, a protein associated with rna splicing
    • Webby CJ, et al. (2009) Jmjd6 catalyses lysyl-hydroxylation of U2AF65, a protein associated with RNA splicing. Science 325(5936):90-93.
    • (2009) Science , vol.325 , Issue.5936 , pp. 90-93
    • Webby, C.J.1
  • 9
    • 66149146320 scopus 로고    scopus 로고
    • Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian dna by mll partner tet1
    • Tahiliani M, et al. (2009) Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324(5929):930-935.
    • (2009) Science , vol.324 , Issue.5929 , pp. 930-935
    • Tahiliani, M.1
  • 10
    • 0347418197 scopus 로고    scopus 로고
    • Collagens, modifying enzymes and their mutations in humans, flies and worms
    • DOI 10.1016/j.tig.2003.11.004
    • Myllyharju J, Kivirikko KI (2004) Collagens, modifying enzymes and their mutations in humans, flies and worms. Trends Genet 20(1):33-43. (Pubitemid 38032818)
    • (2004) Trends in Genetics , vol.20 , Issue.1 , pp. 33-43
    • Myllyharju, J.1    Kivirikko, K.I.2
  • 11
    • 63049120802 scopus 로고    scopus 로고
    • Proteomics-based identification of novel factor inhibiting hypoxia-inducible factor (fih) substrates indicates widespread asparaginyl hydroxylation of ankyrin repeat domain-containing proteins
    • Cockman ME, Webb JD, Kramer HB, Kessler BM, Ratcliffe PJ (2009) Proteomics-based identification of novel factor inhibiting hypoxia-inducible factor (FIH) substrates indicates widespread asparaginyl hydroxylation of ankyrin repeat domain-containing proteins. Mol Cell Proteomics 8(3):535-546.
    • (2009) Mol Cell Proteomics , vol.8 , Issue.3 , pp. 535-546
    • Cockman, M.E.1    Webb, J.D.2    Kramer, H.B.3    Kessler, B.M.4    Ratcliffe, P.J.5
  • 12
    • 0033229970 scopus 로고    scopus 로고
    • The economics of ribosome biosynthesis in yeast
    • DOI 10.1016/S0968-0004(99)01460-7, PII S0968000499014607
    • Warner JR (1999) The economics of ribosome biosynthesis in yeast. Trends Biochem Sci 24(11):437-440. (Pubitemid 29528205)
    • (1999) Trends in Biochemical Sciences , vol.24 , Issue.11 , pp. 437-440
    • Warner, J.R.1
  • 13
    • 33744931688 scopus 로고
    • Streptomycin-induced oversuppression in E. Coli
    • Gorini L, Kataja E (1964) Streptomycin-induced oversuppression in E. coli. Proc Natl Acad Sci USA 51:995-1001.
    • (1964) Proc Natl Acad Sci USA , vol.51 , pp. 995-1001
    • Gorini, L.1    Kataja, E.2
  • 14
    • 34247115033 scopus 로고    scopus 로고
    • Mutational analysis of the ribosome
    • Triman KL (2007) Mutational analysis of the ribosome. Adv Genet 58:89-119.
    • (2007) Adv Genet , vol.58 , pp. 89-119
    • Triman, K.L.1
  • 16
    • 0034699519 scopus 로고    scopus 로고
    • Functional insights from the structure of the 30s ribosomal subunit and its interactions with antibiotics
    • Carter AP, et al. (2000) Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics. Nature 407(6802):340-348.
    • (2000) Nature , vol.407 , Issue.6802 , pp. 340-348
    • Carter, A.P.1
  • 18
    • 0025810272 scopus 로고
    • Translation Initiation Factor 5A and Its Hypusine Modification Are Essential for Cell Viability in the Yeast Saccharomyces cerevisiae
    • Schnier J, Schwelberger HG, Smit-McBride Z, Kang HA, Hershey JW (1991) Translation initiation factor 5A and its hypusine modification are essential for cell viability in the yeast Saccharomyces cerevisiae. Mol Cell Biol 11(6):3105-3114. (Pubitemid 21895697)
    • (1991) Molecular and Cellular Biology , vol.11 , Issue.6 , pp. 3105-3114
    • Schnier, J.1    Schwelberger, H.G.2    Smit-McBride, Z.3    Kang, H.A.4    Hershey, J.W.B.5
  • 20
    • 39349105090 scopus 로고    scopus 로고
    • Expanding chemical biology of 2-oxoglutarate oxygenases
    • DOI 10.1038/nchembio0308-152, PII NCHEMBIO0308152
    • Loenarz C, Schofield CJ (2008) Expanding chemical biology of 2-oxoglutarate oxygenases. Nat Chem Biol 4(3):152-156. (Pubitemid 351264133)
    • (2008) Nature Chemical Biology , vol.4 , Issue.3 , pp. 152-156
    • Loenarz, C.1    Schofield, C.J.2
  • 21
    • 33745806590 scopus 로고    scopus 로고
    • Tpa1p is part of an mRNP complex that influences translation termination, mRNA deadenylation, and mRNA turnover in Saccharomyces cerevisiae
    • DOI 10.1128/MCB.02448-05
    • Keeling KM, Salas-Marco J, Osherovich LZ, Bedwell DM (2006) Tpa1p is part of an mRNP complex that influences translation termination, mRNA deadenylation, and mRNA turnover in Saccharomyces cerevisiae. Mol Cell Biol 26(14):5237-5248. (Pubitemid 44036195)
    • (2006) Molecular and Cellular Biology , vol.26 , Issue.14 , pp. 5237-5248
    • Keeling, K.M.1    Salas-Marco, J.2    Osherovich, L.Z.3    Bedwell, D.M.4
  • 22
    • 77951222526 scopus 로고    scopus 로고
    • Crystal structure of tpa1 from saccharomyces cerevisiae, a component of the messenger ribonucleoprotein complex
    • Kim HS, et al. (2010) Crystal structure of Tpa1 from Saccharomyces cerevisiae, a component of the messenger ribonucleoprotein complex. Nucleic Acids Res 38(6):2099-2110.
    • (2010) Nucleic Acids Res , vol.38 , Issue.6 , pp. 2099-2110
    • Kim, H.S.1
  • 23
    • 77957281190 scopus 로고    scopus 로고
    • Structural and functional insights into saccharomyces cerevisiae tpa1, a putative prolylhydroxylase influencing translation termination and transcription
    • Henri J, et al. (2010) Structural and functional insights into Saccharomyces cerevisiae Tpa1, a putative prolylhydroxylase influencing translation termination and transcription. J Biol Chem 285(40):30767-30778.
    • (2010) J Biol Chem , vol.285 , Issue.40 , pp. 30767-30778
    • Henri, J.1
  • 24
    • 77950686223 scopus 로고    scopus 로고
    • Ogfod1, a novel modulator of eukaryotic translation initiation factor 2alpha phosphorylation and the cellular response to stress
    • Wehner KA, Schütz S, Sarnow P (2010) OGFOD1, a novel modulator of eukaryotic translation initiation factor 2alpha phosphorylation and the cellular response to stress. Mol Cell Biol 30(8):2006-2016.
    • (2010) Mol Cell Biol , vol.30 , Issue.8 , pp. 2016
    • Wehner, K.A.1    Schütz, S.2    Sarnow, P.3
  • 25
    • 77955276499 scopus 로고    scopus 로고
    • Ogfod1, a member of the 2-oxoglutarate and iron dependent dioxygenase family, functions in ischemic signaling
    • Saito K, Adachi N, Koyama H, Matsushita M (2010) OGFOD1, a member of the 2-oxoglutarate and iron dependent dioxygenase family, functions in ischemic signaling. FEBS Lett 584(15):3340-3347.
    • (2010) FEBS Lett , vol.584 , Issue.15 , pp. 3340-3347
    • Saito, K.1    Adachi, N.2    Koyama, H.3    Matsushita, M.4
  • 26
    • 44349091967 scopus 로고    scopus 로고
    • Oxygen-regulated degradation of fission yeast SREBP by Ofd1, a prolyl hydroxylase family member
    • DOI 10.1038/emboj.2008.83, PII EMBOJ200883
    • Hughes BT, Espenshade PJ (2008) Oxygen-regulated degradation of fission yeast SREBP by Ofd1, a prolyl hydroxylase family member. EMBO J 27(10):1491-1501. (Pubitemid 351733338)
    • (2008) EMBO Journal , vol.27 , Issue.10 , pp. 1491-1501
    • Hughes, B.T.1    Espenshade, P.J.2
  • 27
    • 82455172129 scopus 로고    scopus 로고
    • Regulation of the sre1 hypoxic transcription factor by oxygen-dependent control of dna binding
    • Lee CY, Yeh TL, Hughes BT, Espenshade PJ (2011) Regulation of the Sre1 hypoxic transcription factor by oxygen-dependent control of DNA binding. Mol Cell 44(2):225-234.
    • (2011) Mol Cell , vol.44 , Issue.2 , pp. 225-234
    • Lee, C.Y.1    Yeh, T.L.2    Hughes, B.T.3    Espenshade, P.J.4
  • 28
    • 84896511439 scopus 로고    scopus 로고
    • Ogfod1 catalyzes prolyl hydroxylation of rps23 and is involved in translation control and stress granule formation
    • Singleton RS, et al. (2014) OGFOD1 catalyzes prolyl hydroxylation of RPS23 and is involved in translation control and stress granule formation. Proc Natl Acad Sci USA 111:4031-4036.
    • (2014) Proc Natl Acad Sci USA , vol.111 , pp. 4031-4036
    • Singleton, R.S.1
  • 29
    • 84896506732 scopus 로고    scopus 로고
    • Drosophila ribosomal prolyl-hydroxylase required for mrna translation, cell homeostasis and organ growth
    • Katz MJ, et al. (2014) Drosophila ribosomal prolyl-hydroxylase required for mRNA translation, cell homeostasis and organ growth. Proc Natl Acad Sci USA 111: 4025-4030.
    • (2014) Proc Natl Acad Sci USA , vol.111 , pp. 4025-4030
    • Katz, M.J.1
  • 31
    • 0014685219 scopus 로고
    • 3,4-dihydroxyproline: A new amino acid in diatom cell walls
    • Nakajima T, Volcani BE (1969) 3,4-dihydroxyproline: A new amino acid in diatom cell walls. Science 164(3886):1400-1401.
    • (1969) Science , vol.164 , Issue.3886 , pp. 1400-1401
    • Nakajima, T.1    Volcani, B.E.2
  • 32
    • 83855162728 scopus 로고    scopus 로고
    • The structure of the eukaryotic ribosome at 3.0 a resolution
    • Ben-Shem A, et al. (2011) The structure of the eukaryotic ribosome at 3.0 A resolution. Science 334(6062):1524-1529.
    • (2011) Science , vol.334 , Issue.6062 , pp. 1524-1529
    • Ben-Shem, A.1
  • 33
    • 0035958547 scopus 로고    scopus 로고
    • +] prion
    • DOI 10.1016/S0092-8674(01)00440-8
    • Osherovich LZ, Weissman JS (2001) Multiple Gln/Asn-rich prion domains confer susceptibility to induction of the yeast [PSI(+)] prion. Cell 106(2):183-194. (Pubitemid 32772629)
    • (2001) Cell , vol.106 , Issue.2 , pp. 183-194
    • Osherovich, L.Z.1    Weissman, J.S.2
  • 34
    • 0029780647 scopus 로고    scopus 로고
    • Support for the prion hypothesis for inheritance of a phenotypic trait in yeast
    • Patino MM, Liu JJ, Glover JR, Lindquist S (1996) Support for the prion hypothesis for inheritance of a phenotypic trait in yeast. Science 273(5275):622-626. (Pubitemid 26262109)
    • (1996) Science , vol.273 , Issue.5275 , pp. 622-626
    • Patino, M.M.1    Liu, J.-J.2    Glover, J.R.3    Lindquist, S.4
  • 35
    • 4544235083 scopus 로고    scopus 로고
    • Epigenetic regulation of translation reveals hidden genetic variation to produce complex traits
    • DOI 10.1038/nature02885
    • True HL, Berlin I, Lindquist SL (2004) Epigenetic regulation of translation reveals hidden genetic variation to produce complex traits. Nature 431(7005):184-187. (Pubitemid 39243470)
    • (2004) Nature , vol.431 , Issue.7005 , pp. 184-187
    • True, H.L.1    Bedin, I.2    Lindquist, S.L.3
  • 36
    • 0034727077 scopus 로고    scopus 로고
    • A yeast prion provides a mechanism for genetic variation and phenotypic diversity
    • True HL, Lindquist SL (2000) A yeast prion provides a mechanism for genetic variation and phenotypic diversity. Nature 407(6803):477-483.
    • (2000) Nature , vol.407 , Issue.6803 , pp. 477-483
    • True, H.L.1    Lindquist, S.L.2
  • 37
    • 54849413018 scopus 로고    scopus 로고
    • Introducing sense into nonsense in treatments of human genetic diseases
    • Linde L, Kerem B (2008) Introducing sense into nonsense in treatments of human genetic diseases. Trends Genet 24(11):552-563.
    • (2008) Trends Genet , vol.24 , Issue.11 , pp. 552-563
    • Linde, L.1    Kerem, B.2
  • 38
    • 0029047851 scopus 로고
    • Translational termination efficiency in mammals is influenced by the base following the stop codon
    • McCaughan KK, Brown CM, Dalphin ME, Berry MJ, Tate WP (1995) Translational termination efficiency in mammals is influenced by the base following the stop codon. Proc Natl Acad Sci USA 92(12):5431-5435.
    • (1995) Proc Natl Acad Sci USA , vol.92 , Issue.12 , pp. 5431-5435
    • McCaughan, K.K.1    Brown, C.M.2    Dalphin, M.E.3    Berry, M.J.4    Tate, W.P.5
  • 39
    • 0034779875 scopus 로고    scopus 로고
    • Impact of the six nucleotides downstream of the stop codon on translation termination
    • DOI 10.1093/embo-reports/kve176
    • Namy O, Hatin I, Rousset JP (2001) Impact of the six nucleotides downstream of the stop codon on translation termination. EMBO Rep 2(9):787-793. (Pubitemid 32982746)
    • (2001) EMBO Reports , vol.2 , Issue.9 , pp. 787-793
    • Namy, O.1    Hatin, I.2    Rousset, J.-P.3
  • 40
    • 0029153552 scopus 로고
    • The efficiency of translation termination is determined by a synergistic interplay between upstream and downstream sequences in saccharomyces cerevisiae
    • Bonetti B, Fu L, Moon J, Bedwell DM (1995) The efficiency of translation termination is determined by a synergistic interplay between upstream and downstream sequences in Saccharomyces cerevisiae. J Mol Biol 251(3):334-345.
    • (1995) J Mol Biol , vol.251 , Issue.3 , pp. 334-345
    • Bonetti, B.1    Fu, L.2    Moon, J.3    Bedwell, D.M.4
  • 41
    • 84870308013 scopus 로고    scopus 로고
    • Oxygenase-catalyzed ribosome hydroxylation occurs in prokaryotes and humans
    • Ge W, et al. (2012) Oxygenase-catalyzed ribosome hydroxylation occurs in prokaryotes and humans. Nat Chem Biol 8(12):960-962.
    • (2012) Nat Chem Biol , vol.8 , Issue.12 , pp. 960-962
    • Ge, W.1
  • 42
    • 78449233126 scopus 로고    scopus 로고
    • The alkb domain of mammalian abh8 catalyzes hydroxylation of 5-methoxycarbonylmethyluridine at the wobble position of trna
    • Fu Y, et al. (2010) The AlkB domain of mammalian ABH8 catalyzes hydroxylation of 5-methoxycarbonylmethyluridine at the wobble position of tRNA. Angew Chem Int Ed Engl 49(47):8885-8888.
    • (2010) Angew Chem Int Ed Engl , vol.49 , Issue.47 , pp. 8885-8888
    • Fu, Y.1
  • 43
    • 78049396647 scopus 로고    scopus 로고
    • Expanding role of the jumonji c domain as an rna hydroxylase
    • Noma A, et al. (2010) Expanding role of the jumonji C domain as an RNA hydroxylase. J Biol Chem 285(45):34503-34507.
    • (2010) J Biol Chem , vol.285 , Issue.45 , pp. 34503-34507
    • Noma, A.1
  • 44
    • 79551582659 scopus 로고    scopus 로고
    • Alkbh8-mediated formation of a novel diastereomeric pair of wobble nucleosides in mammalian trna
    • van den Born E, et al. (2011) ALKBH8-mediated formation of a novel diastereomeric pair of wobble nucleosides in mammalian tRNA. Nat Commun 2:172.
    • (2011) Nat Commun , vol.2 , pp. 172
    • Van Den Born, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.