메뉴 건너뛰기




Volumn 57, Issue 3, 2014, Pages 280-286

Analysis of plastid and nuclear DNA data in plant phylogenetics-evaluation and improvement

Author keywords

combined analysis; incongruence; nuclear DNA; phylogenetics; plastid DNA

Indexed keywords

CHLOROPLAST DNA; PLANT DNA;

EID: 84895923654     PISSN: 16747305     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11427-014-4620-7     Document Type: Review
Times cited : (40)

References (74)
  • 1
    • 70350218974 scopus 로고    scopus 로고
    • An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG III
    • APG III
    • APG III. An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG III. Bot J Linn Soc, 2009, 161: 105-121.
    • (2009) Bot J Linn Soc , vol.161 , pp. 105-121
  • 3
    • 78650511270 scopus 로고    scopus 로고
    • Multigene phylogeny of the green lineage reveals the origin and diversification of land plants
    • Finet C, Timme RE, Delwiche CF, Marlétaz F. Multigene phylogeny of the green lineage reveals the origin and diversification of land plants. Curr Biol, 2010, 20: 2217-2222.
    • (2010) Curr Biol , vol.20 , pp. 2217-2222
    • Finet, C.1    Timme, R.E.2    Delwiche, C.F.3    Marlétaz, F.4
  • 4
    • 80054726331 scopus 로고    scopus 로고
    • Towards resolving the complete fern Tree of Life
    • Lehtonen S. Towards resolving the complete fern Tree of Life. PLoS ONE, 2011, 6: e24851.
    • (2011) PLoS ONE , vol.6
    • Lehtonen, S.1
  • 6
    • 0033604619 scopus 로고    scopus 로고
    • Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology
    • Soltis PS, Soltis DE, Chase MW. Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology. Nature, 1999, 402: 402-404.
    • (1999) Nature , vol.402 , pp. 402-404
    • Soltis, P.S.1    Soltis, D.E.2    Chase, M.W.3
  • 7
    • 77956488850 scopus 로고    scopus 로고
    • New insights into the species problem
    • Yang Y, Zhou ZK. New insights into the species problem. Sci China Life Sci, 2010, 53: 964-972.
    • (2010) Sci China Life Sci , vol.53 , pp. 964-972
    • Yang, Y.1    Zhou, Z.K.2
  • 8
    • 84865522931 scopus 로고    scopus 로고
    • Complete mitochondrial genome of the Japanese snapping shrimp Alpheus japonicus (Crustacea: Decapoda: Caridea): gene rearrangement and phylogeny within Caridea
    • Shen X, Li X, Sha Z, Yan B, Xu Q. Complete mitochondrial genome of the Japanese snapping shrimp Alpheus japonicus (Crustacea: Decapoda: Caridea): gene rearrangement and phylogeny within Caridea. Sci China Life Sci, 2012, 55: 591-598.
    • (2012) Sci China Life Sci , vol.55 , pp. 591-598
    • Shen, X.1    Li, X.2    Sha, Z.3    Yan, B.4    Xu, Q.5
  • 9
    • 84872332496 scopus 로고    scopus 로고
    • Four new species of the genus Hymenoscyphus (fungi) based on morphology and molecular data
    • Zheng H, Zhuang W. Four new species of the genus Hymenoscyphus (fungi) based on morphology and molecular data. Sci China Life Sci, 2013, 56: 90-100.
    • (2013) Sci China Life Sci , vol.56 , pp. 90-100
    • Zheng, H.1    Zhuang, W.2
  • 11
    • 36448934485 scopus 로고    scopus 로고
    • Polyphyly of the fern family Tectariaceae sensu Ching: insights from cpDNA sequence data
    • Liu H, Zhang X, Chen Z, Dong S, Qiu Y. Polyphyly of the fern family Tectariaceae sensu Ching: insights from cpDNA sequence data. Sci China Ser C-Life Sci, 2007, 50: 789-798.
    • (2007) Sci China Ser C-Life Sci , vol.50 , pp. 789-798
    • Liu, H.1    Zhang, X.2    Chen, Z.3    Dong, S.4    Qiu, Y.5
  • 12
    • 0001907141 scopus 로고
    • Phylogenetic consequences of cytoplasmic gene flow in plants
    • Rieseberg LH, Soltis DE. Phylogenetic consequences of cytoplasmic gene flow in plants. Evol Trends Plant, 1991, 5: 65-83.
    • (1991) Evol Trends Plant , vol.5 , pp. 65-83
    • Rieseberg, L.H.1    Soltis, D.E.2
  • 13
    • 0036062110 scopus 로고    scopus 로고
    • Utility of low-copy nuclear gene sequences in plant phylogenetics
    • Sang T. Utility of low-copy nuclear gene sequences in plant phylogenetics. Crit Rev Biochem Molec Biol, 2002, 37: 121-147.
    • (2002) Crit Rev Biochem Molec Biol , vol.37 , pp. 121-147
    • Sang, T.1
  • 14
    • 0346091308 scopus 로고    scopus 로고
    • Use of nuclear genes for phylogeny reconstruction in plants
    • Small RL, Cronn RC, Wendel JF. Use of nuclear genes for phylogeny reconstruction in plants. Aust Syst Biol, 2004, 17: 145-170.
    • (2004) Aust Syst Biol , vol.17 , pp. 145-170
    • Small, R.L.1    Cronn, R.C.2    Wendel, J.F.3
  • 15
    • 0000989175 scopus 로고
    • Gene trees and species trees: molecular systematics as one character taxonomy
    • Doyle JJ. Gene trees and species trees: molecular systematics as one character taxonomy. Syst Biol, 1992, 17: 144-163.
    • (1992) Syst Biol , vol.17 , pp. 144-163
    • Doyle, J.J.1
  • 17
    • 0028837216 scopus 로고
    • Discordance between nuclear and chloroplast phylogenies in the Heuchera group (Saxifragaceae)
    • Soltis DE, Kuzoff RK. Discordance between nuclear and chloroplast phylogenies in the Heuchera group (Saxifragaceae). Evolution, 1995, 49: 727-742.
    • (1995) Evolution , vol.49 , pp. 727-742
    • Soltis, D.E.1    Kuzoff, R.K.2
  • 19
    • 44149083778 scopus 로고    scopus 로고
    • Reticulate evolution in Thuja inferred from multiple gene sequences: implications for the study of biogeographical disjunction between eastern Asia and North America
    • Peng D, Wang XQ. Reticulate evolution in Thuja inferred from multiple gene sequences: implications for the study of biogeographical disjunction between eastern Asia and North America. Molec Phylog Evol, 2008, 47: 1190-1202.
    • (2008) Molec Phylog Evol , vol.47 , pp. 1190-1202
    • Peng, D.1    Wang, X.Q.2
  • 20
    • 64749105282 scopus 로고    scopus 로고
    • A Pleistocene inter-tribal allopolyploidization event precedes the species radiation of Pachycladon (Brassicaceae) in New Zealand
    • Joly S, Heenan PB, Lockhart PJ. A Pleistocene inter-tribal allopolyploidization event precedes the species radiation of Pachycladon (Brassicaceae) in New Zealand. Molec Phylog Evol, 2009, 51: 365-372.
    • (2009) Molec Phylog Evol , vol.51 , pp. 365-372
    • Joly, S.1    Heenan, P.B.2    Lockhart, P.J.3
  • 21
    • 0030311441 scopus 로고    scopus 로고
    • Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae)
    • Mason-Gamer RJ, Kellogg EA. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Syst Biol, 1996, 45: 524-545.
    • (1996) Syst Biol , vol.45 , pp. 524-545
    • Mason-Gamer, R.J.1    Kellogg, E.A.2
  • 22
    • 0032226105 scopus 로고    scopus 로고
    • Combining data sets with different phylogenetic histories
    • Wiens JJ. Combining data sets with different phylogenetic histories. Syst Biol, 1998, 47: 568-581.
    • (1998) Syst Biol , vol.47 , pp. 568-581
    • Wiens, J.J.1
  • 24
    • 7444248604 scopus 로고
    • PAUP*: Phylogenetic Analysis Using Parsimony
    • Sunderland: Sinauer Associates
    • Swofford DL. PAUP*: Phylogenetic Analysis Using Parsimony, Beta Test Version 40. Sunderland: Sinauer Associates, 1995.
    • (1995) Beta Test Version 40
    • Swofford, D.L.1
  • 25
    • 0021084212 scopus 로고
    • Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes
    • Templeton AR. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution, 1983, 37: 221-244.
    • (1983) Evolution , vol.37 , pp. 221-244
    • Templeton, A.R.1
  • 26
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molec Biol Evol, 1999, 16: 1114-1116.
    • (1999) Molec Biol Evol , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 27
    • 41049106881 scopus 로고    scopus 로고
    • Dealing with incongruence in the quest for the species tree: a case study from the orchid genus Satyrium
    • van der Niet T, Linder HP. Dealing with incongruence in the quest for the species tree: a case study from the orchid genus Satyrium. Molec Phylog Evol, 2008, 47: 154-174.
    • (2008) Molec Phylog Evol , vol.47 , pp. 154-174
    • van der Niet, T.1    Linder, H.P.2
  • 29
    • 70149100417 scopus 로고    scopus 로고
    • A statistical approach for distinguishing hybridization and incomplete lineage sorting
    • Joly S, McLenachan PA, Lockhart PJ. A statistical approach for distinguishing hybridization and incomplete lineage sorting. Am Nat, 2009, 174: E54-E70.
    • (2009) Am Nat , vol.174
    • Joly, S.1    McLenachan, P.A.2    Lockhart, P.J.3
  • 30
    • 1642356002 scopus 로고    scopus 로고
    • Congruence versus phylogenetic accuracy: revisiting the incongruence length difference test
    • Hipp AL, Hall JC, Sytsma KJ. Congruence versus phylogenetic accuracy: revisiting the incongruence length difference test. Syst Biol, 2004, 53: 81-89.
    • (2004) Syst Biol , vol.53 , pp. 81-89
    • Hipp, A.L.1    Hall, J.C.2    Sytsma, K.J.3
  • 31
    • 84959806898 scopus 로고
    • A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes)
    • Kluge AG. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Syst Zool, 1989, 38: 7-25.
    • (1989) Syst Zool , vol.38 , pp. 7-25
    • Kluge, A.G.1
  • 32
    • 0042592785 scopus 로고    scopus 로고
    • On simultaneous analysis
    • Nixon KC, Carpenter JM. On simultaneous analysis. Cladistics, 1996, 12: 221-241.
    • (1996) Cladistics , vol.12 , pp. 221-241
    • Nixon, K.C.1    Carpenter, J.M.2
  • 33
    • 34547729636 scopus 로고    scopus 로고
    • Staminal evolution in the genus Salvia (Lamiaceae): molecular phylogenetic evidence for multiple origins of the staminal lever
    • Walker JB, Sytsma KJ. Staminal evolution in the genus Salvia (Lamiaceae): molecular phylogenetic evidence for multiple origins of the staminal lever. Ann Bot, 2007, 100: 375-391.
    • (2007) Ann Bot , vol.100 , pp. 375-391
    • Walker, J.B.1    Sytsma, K.J.2
  • 34
    • 70149117540 scopus 로고    scopus 로고
    • DNA barcoding: species delimitation in tree peonies
    • Zhang J, Wang J, Xia T, Zhou S. DNA barcoding: species delimitation in tree peonies. Sci China Ser C-Life Sci, 2009, 52: 568-578.
    • (2009) Sci China Ser C-Life Sci , vol.52 , pp. 568-578
    • Zhang, J.1    Wang, J.2    Xia, T.3    Zhou, S.4
  • 35
    • 79955724832 scopus 로고    scopus 로고
    • Do model-based phylogenetic analyses perform better than parsimony? A test with empirical data
    • Rindal E, Brower AVZ. Do model-based phylogenetic analyses perform better than parsimony? A test with empirical data. Cladistics, 2011, 27: 331-334.
    • (2011) Cladistics , vol.27 , pp. 331-334
    • Rindal, E.1    Brower, A.V.Z.2
  • 36
    • 7444225822 scopus 로고    scopus 로고
    • Phylogenetic and biogeographic diversification of Rhus (Anacardiaceae) in the Northern Hemisphere
    • Yi T, Miller AJ, Wen J. Phylogenetic and biogeographic diversification of Rhus (Anacardiaceae) in the Northern Hemisphere. Molec Phylog Evol, 2004, 33: 861-879.
    • (2004) Molec Phylog Evol , vol.33 , pp. 861-879
    • Yi, T.1    Miller, A.J.2    Wen, J.3
  • 37
    • 33847027594 scopus 로고    scopus 로고
    • Phylogeny and morphological evolution of tribe Menispermeae (Menispermaceae) inferred from chloroplast and nuclear sequences
    • Wang W, Wang HC, Chen ZD. Phylogeny and morphological evolution of tribe Menispermeae (Menispermaceae) inferred from chloroplast and nuclear sequences. Perspect Plant Ecol Evol Syst, 2007, 8: 141-154.
    • (2007) Perspect Plant Ecol Evol Syst , vol.8 , pp. 141-154
    • Wang, W.1    Wang, H.C.2    Chen, Z.D.3
  • 38
    • 0028093739 scopus 로고
    • A phylogenetic analysis of Epilobium (Onagraceae) based on nuclear ribosomal DNA sequence
    • Baum DA, Sytsma KJ, Hoch PC. A phylogenetic analysis of Epilobium (Onagraceae) based on nuclear ribosomal DNA sequence. Syst Biol, 1994, 19: 363-388.
    • (1994) Syst Biol , vol.19 , pp. 363-388
    • Baum, D.A.1    Sytsma, K.J.2    Hoch, P.C.3
  • 39
    • 79956344248 scopus 로고    scopus 로고
    • Estimating the species tree for Hawaiian Schiedea (Caryophyllaceae) from multiple loci in the presence of reticulate evolution
    • Willyard A, Wallace LE, Wagner WL, Weller SG, Sakai AK, Nepokroeff M. Estimating the species tree for Hawaiian Schiedea (Caryophyllaceae) from multiple loci in the presence of reticulate evolution. Molec Phylog Evol, 2011, 60: 29-48.
    • (2011) Molec Phylog Evol , vol.60 , pp. 29-48
    • Willyard, A.1    Wallace, L.E.2    Wagner, W.L.3    Weller, S.G.4    Sakai, A.K.5    Nepokroeff, M.6
  • 40
    • 75649110865 scopus 로고    scopus 로고
    • Discordant mitochondrial and nuclear gene phylogenies in emydid turtles: implications for speciation and conservation
    • Wiens JJ, Kuczynski CA, Stephens PR. Discordant mitochondrial and nuclear gene phylogenies in emydid turtles: implications for speciation and conservation. Biol J Linn Soc, 2010, 99: 445-461.
    • (2010) Biol J Linn Soc , vol.99 , pp. 445-461
    • Wiens, J.J.1    Kuczynski, C.A.2    Stephens, P.R.3
  • 41
    • 0036375819 scopus 로고    scopus 로고
    • Relationships within Cornales and circumscription of Cornaceae-matK and rbcL sequence data and effects of outgroups and long branches
    • Xiang JQ, Moody ML, Soltis DE, Fan C, Soltis PS. Relationships within Cornales and circumscription of Cornaceae-matK and rbcL sequence data and effects of outgroups and long branches. Molec Phylog Evol, 2002, 24: 35-57.
    • (2002) Molec Phylog Evol , vol.24 , pp. 35-57
    • Xiang, J.Q.1    Moody, M.L.2    Soltis, D.E.3    Fan, C.4    Soltis, P.S.5
  • 42
    • 0032025770 scopus 로고    scopus 로고
    • Long-branch distraction and the strepsiptera
    • Whiting MF. Long-branch distraction and the strepsiptera. Syst Biol, 1998, 47: 134-138.
    • (1998) Syst Biol , vol.47 , pp. 134-138
    • Whiting, M.F.1
  • 43
    • 0030000952 scopus 로고    scopus 로고
    • Relative apparent synapomorphy analysis (RASA) I: the statistical measurement of phylogenetic signal
    • Lyons-Weiler J, Hoelzer GA, Tausch RJ. Relative apparent synapomorphy analysis (RASA) I: the statistical measurement of phylogenetic signal. Molec Biol Evol, 1996, 13: 749-757.
    • (1996) Molec Biol Evol , vol.13 , pp. 749-757
    • Lyons-Weiler, J.1    Hoelzer, G.A.2    Tausch, R.J.3
  • 44
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool, 1978, 27: 401-410.
    • (1978) Syst Zool , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 45
    • 0035527406 scopus 로고    scopus 로고
    • Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods
    • Swofford DL, Waddell PJ, Huelsenbeck JP, Foster PG, Lewis PO, Rogers JS. Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods. Syst Biol, 2001, 50: 525-539.
    • (2001) Syst Biol , vol.50 , pp. 525-539
    • Swofford, D.L.1    Waddell, P.J.2    Huelsenbeck, J.P.3    Foster, P.G.4    Lewis, P.O.5    Rogers, J.S.6
  • 46
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • D. H. Hillis, C. Moritz, and B. K. Mable (Eds.), Sunderland: Sinauer Associates
    • Swofford DL, Olsen GJ, Waddell PJ, Hillis DM. Phylogenetic inference. In: Hillis DH, Moritz C, Mable BK, eds. Molecular Systematics. Sunderland: Sinauer Associates, 1996. 407-514.
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 47
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequence: a maximum likelihood approach
    • Felsenstein J. Evolutionary trees from DNA sequence: a maximum likelihood approach. J Molec Evol, 1981, 17: 368-376.
    • (1981) J Molec Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 48
    • 0023478742 scopus 로고
    • Tempo and mode sequence evolution in mitochondrial DNA of Hawaiian Drosophila
    • DeSalle R, Freedman T, Prager EM, Wilson AC. Tempo and mode sequence evolution in mitochondrial DNA of Hawaiian Drosophila. J Molec Evol, 1987, 26: 157-164.
    • (1987) J Molec Evol , vol.26 , pp. 157-164
    • DeSalle, R.1    Freedman, T.2    Prager, E.M.3    Wilson, A.C.4
  • 49
    • 0031371067 scopus 로고    scopus 로고
    • Multiple sources of character information and the phylogeny of Hawaiian drosophilids
    • Baker RH, DeSalle R. Multiple sources of character information and the phylogeny of Hawaiian drosophilids. Syst Biol, 1997, 46: 654-673.
    • (1997) Syst Biol , vol.46 , pp. 654-673
    • Baker, R.H.1    DeSalle, R.2
  • 53
    • 79959642719 scopus 로고    scopus 로고
    • Molecular evidence for hybridization and introgression in the neotropical coastal desert-endemic Palaua (Malveae, Malvaceae)
    • Schneider JV, Schulte K, Aguilar JF, Huertas ML. Molecular evidence for hybridization and introgression in the neotropical coastal desert-endemic Palaua (Malveae, Malvaceae). Molec Phylog Evol, 2011, 60: 373-384.
    • (2011) Molec Phylog Evol , vol.60 , pp. 373-384
    • Schneider, J.V.1    Schulte, K.2    Aguilar, J.F.3    Huertas, M.L.4
  • 54
    • 37749042071 scopus 로고    scopus 로고
    • An ITS phylogeny of Tribe Senecioneae (Asteraceae) and a new delimitation of Senecio L
    • Pelser PB, Nordenstam B, Kadereit JW, Watson LE. An ITS phylogeny of Tribe Senecioneae (Asteraceae) and a new delimitation of Senecio L. Taxon, 2007, 56: 1077-1104.
    • (2007) Taxon , vol.56 , pp. 1077-1104
    • Pelser, P.B.1    Nordenstam, B.2    Kadereit, J.W.3    Watson, L.E.4
  • 55
    • 0023822631 scopus 로고
    • Relationship between gene trees and species trees
    • Pamilo P, Nei M. Relationship between gene trees and species trees. Molec Biol Evol, 1988, 5: 568-583.
    • (1988) Molec Biol Evol , vol.5 , pp. 568-583
    • Pamilo, P.1    Nei, M.2
  • 56
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima F. Evolutionary relationship of DNA sequences in finite populations. Genetics, 1983, 105: 437-460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 57
    • 67649910835 scopus 로고    scopus 로고
    • The use of digital image-based morphometrics to study the phenotypic mosaic in taxa with porous genomes
    • Lexer C, Joseph J, van Loo M, Prenner G, Heinze B, Chase MW, Kirkup D. The use of digital image-based morphometrics to study the phenotypic mosaic in taxa with porous genomes. Taxon, 2009, 58: 349-364.
    • (2009) Taxon , vol.58 , pp. 349-364
    • Lexer, C.1    Joseph, J.2    van Loo, M.3    Prenner, G.4    Heinze, B.5    Chase, M.W.6    Kirkup, D.7
  • 58
    • 0031465850 scopus 로고    scopus 로고
    • Hybrid origins of plant species
    • Rieseberg LH. Hybrid origins of plant species. Annu Rev Ecol Syst, 1997, 28: 289-359.
    • (1997) Annu Rev Ecol Syst , vol.28 , pp. 289-359
    • Rieseberg, L.H.1
  • 59
    • 0034003389 scopus 로고    scopus 로고
    • Morphological and molecular evidence for hybridization and introgression in a willow (Salix) hybrid zone
    • Hardig TM, Brunsfeld SJ, Fritz RS, Morgan M, Orians CM. Morphological and molecular evidence for hybridization and introgression in a willow (Salix) hybrid zone. Molec Ecol, 2000, 9: 9-24.
    • (2000) Molec Ecol , vol.9 , pp. 9-24
    • Hardig, T.M.1    Brunsfeld, S.J.2    Fritz, R.S.3    Morgan, M.4    Orians, C.M.5
  • 61
    • 34547789863 scopus 로고    scopus 로고
    • Hybridization between two polyploid Cardamine (Brassicaceae) species in northwestern Spain: discordance between morphological and genetic variation patterns
    • Lihová J, Kučera J, Perný M, Marhold K. Hybridization between two polyploid Cardamine (Brassicaceae) species in northwestern Spain: discordance between morphological and genetic variation patterns. Ann Bot, 2007, 99: 1083-1096.
    • (2007) Ann Bot , vol.99 , pp. 1083-1096
    • Lihová, J.1    Kučera, J.2    Perný, M.3    Marhold, K.4
  • 62
    • 77952402263 scopus 로고    scopus 로고
    • Natural hybridisation between kermes (Quercus coccifera L) and holm oaks (Q ilex L) revealed by microsatellite markers
    • Ortego J, Bonal R. Natural hybridisation between kermes (Quercus coccifera L) and holm oaks (Q ilex L) revealed by microsatellite markers. Plant Biol, 2010, 12: 234-238.
    • (2010) Plant Biol , vol.12 , pp. 234-238
    • Ortego, J.1    Bonal, R.2
  • 63
    • 34447299926 scopus 로고    scopus 로고
    • Phylogeny of Rhus (Anacardiaceae) based on sequences of nuclear Nia-i3 intron and chloroplast trnC-trnD
    • Yi T, Miller AJ, Wen J. Phylogeny of Rhus (Anacardiaceae) based on sequences of nuclear Nia-i3 intron and chloroplast trnC-trnD. Syst Bot, 2007, 32: 379-391.
    • (2007) Syst Bot , vol.32 , pp. 379-391
    • Yi, T.1    Miller, A.J.2    Wen, J.3
  • 64
    • 80052205236 scopus 로고    scopus 로고
    • Revisiting monophyly in Haworthia Duval (Asphodelaceae): incongruence, hybridization and contemporary speciation
    • Ramdhani S, Barker N, Cowling RM. Revisiting monophyly in Haworthia Duval (Asphodelaceae): incongruence, hybridization and contemporary speciation. Taxon, 2011, 60: 1001-1014.
    • (2011) Taxon , vol.60 , pp. 1001-1014
    • Ramdhani, S.1    Barker, N.2    Cowling, R.M.3
  • 65
    • 0030497796 scopus 로고    scopus 로고
    • Molecular marker incongruence in plant hybrid zones and phylogenetic trees
    • Rieseberg LH, Whitton J, Linder CR. Molecular marker incongruence in plant hybrid zones and phylogenetic trees. Acta Bot Neerl, 1996, 45: 243-262.
    • (1996) Acta Bot Neerl , vol.45 , pp. 243-262
    • Rieseberg, L.H.1    Whitton, J.2    Linder, C.R.3
  • 66
    • 17844377993 scopus 로고    scopus 로고
    • Leaky prezygotic isolation and porous genomes: rapid introgression of maternally inherited DNA
    • Chan KM, Levin SA. Leaky prezygotic isolation and porous genomes: rapid introgression of maternally inherited DNA. Evolution, 2005, 59: 720-729.
    • (2005) Evolution , vol.59 , pp. 720-729
    • Chan, K.M.1    Levin, S.A.2
  • 67
    • 0842322955 scopus 로고    scopus 로고
    • Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA
    • Funk DJ, Omland KE. Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annu Rev Ecol Evol Syst, 2003, 34: 397-423.
    • (2003) Annu Rev Ecol Evol Syst , vol.34 , pp. 397-423
    • Funk, D.J.1    Omland, K.E.2
  • 68
    • 0027136885 scopus 로고
    • Geographic structure of chloroplast DNA polymorphisms in European oaks
    • Petit RJ, Kremer A, Wagner DB. Geographic structure of chloroplast DNA polymorphisms in European oaks. Theor Appl Genet, 1993, 87: 122-128.
    • (1993) Theor Appl Genet , vol.87 , pp. 122-128
    • Petit, R.J.1    Kremer, A.2    Wagner, D.B.3
  • 69
    • 24644453429 scopus 로고    scopus 로고
    • Phylogeny, biogeography, and molecular dating of cornelian cherries (Cornus, Cornaceae): tracking Tertiary plant migration
    • Xiang QY, Manchester SR, Thomas DT, Zhang W, Fan C. Phylogeny, biogeography, and molecular dating of cornelian cherries (Cornus, Cornaceae): tracking Tertiary plant migration. Evolution, 2005, 59: 1685-1700.
    • (2005) Evolution , vol.59 , pp. 1685-1700
    • Xiang, Q.Y.1    Manchester, S.R.2    Thomas, D.T.3    Zhang, W.4    Fan, C.5
  • 70
    • 0031774059 scopus 로고    scopus 로고
    • GeneTree: comparing gene and species phylogenies using reconciled trees
    • Page RDM. GeneTree: comparing gene and species phylogenies using reconciled trees. Bioinformatics, 1998, 14: 819-820.
    • (1998) Bioinformatics , vol.14 , pp. 819-820
    • Page, R.D.M.1
  • 71
    • 0031110886 scopus 로고    scopus 로고
    • From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem
    • Page RDM, Charleston MA. From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem. Molec Phylog Evol, 1997, 7: 231-240.
    • (1997) Molec Phylog Evol , vol.7 , pp. 231-240
    • Page, R.D.M.1    Charleston, M.A.2
  • 72
    • 0042697667 scopus 로고    scopus 로고
    • The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly, and polyphyly in a coalescent model
    • Rosenberg NA. The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly, and polyphyly in a coalescent model. Evolution, 2003, 57: 1465-1477.
    • (2003) Evolution , vol.57 , pp. 1465-1477
    • Rosenberg, N.A.1
  • 73
    • 65649131928 scopus 로고    scopus 로고
    • Gene tree discordance, phylogenetic inference and the multispecies coalescent
    • Degnan JH, Rosenberg NA. Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol Evol, 2009, 24: 332-340.
    • (2009) Trends Ecol Evol , vol.24 , pp. 332-340
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 74
    • 0001466544 scopus 로고
    • A randomization test of the null hypothesis that two cladograms are sample estimates of a parametric phylogenetic tree
    • Rodrigo AG, Kelly-Borges M, Bergquist PR, Bergquist PL. A randomization test of the null hypothesis that two cladograms are sample estimates of a parametric phylogenetic tree. New Zeal J Bot, 1993, 31: 257-268.
    • (1993) New Zeal J Bot , vol.31 , pp. 257-268
    • Rodrigo, A.G.1    Kelly-Borges, M.2    Bergquist, P.R.3    Bergquist, P.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.