메뉴 건너뛰기




Volumn 6, Issue 2, 2014, Pages 285-292

The earliest transcribed zygotic genes are short, newly evolved, and different across species

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

EID: 84895904232     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2013.12.030     Document Type: Article
Times cited : (161)

References (46)
  • 5
    • 84858771305 scopus 로고    scopus 로고
    • Identification of early zygotic genes in the yellow fever mosquito Aedes aegypti and discovery of a motif involved in early zygotic genome activation
    • Biedler J.K., Hu W., Tae H., Tu Z. Identification of early zygotic genes in the yellow fever mosquito Aedes aegypti and discovery of a motif involved in early zygotic genome activation. PLoS ONE 2012, 7:e33933.
    • (2012) PLoS ONE , vol.7
    • Biedler, J.K.1    Hu, W.2    Tae, H.3    Tu, Z.4
  • 7
    • 84863602540 scopus 로고    scopus 로고
    • Younger genes are less likely to be essential than older genes, and duplicates are less likely to be essential than singletons of the same age
    • Chen W.-H., Trachana K., Lercher M.J., Bork P. Younger genes are less likely to be essential than older genes, and duplicates are less likely to be essential than singletons of the same age. Mol. Biol. Evol. 2012, 29:1703-1706.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 1703-1706
    • Chen, W.-H.1    Trachana, K.2    Lercher, M.J.3    Bork, P.4
  • 8
    • 34249092299 scopus 로고    scopus 로고
    • Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo
    • De Renzis S., Elemento O., Tavazoie S., Wieschaus E.F. Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo. PLoS Biol. 2007, 5:e117.
    • (2007) PLoS Biol. , vol.5
    • De Renzis, S.1    Elemento, O.2    Tavazoie, S.3    Wieschaus, E.F.4
  • 9
    • 0028605603 scopus 로고
    • Temporal colinearity and the phylotypic progression: a basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony
    • Duboule D. Temporal colinearity and the phylotypic progression: a basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony. Dev. Suppl. 1994, 1994:135-142.
    • (1994) Dev. Suppl. , vol.1994 , pp. 135-142
    • Duboule, D.1
  • 12
    • 84864086201 scopus 로고    scopus 로고
    • Human intronless genes: functional groups, associated diseases, evolution, and mRNA processing in absence of splicing
    • Grzybowska E.A. Human intronless genes: functional groups, associated diseases, evolution, and mRNA processing in absence of splicing. Biochem. Biophys. Res. Commun. 2012, 424:1-6.
    • (2012) Biochem. Biophys. Res. Commun. , vol.424 , pp. 1-6
    • Grzybowska, E.A.1
  • 13
    • 0347763875 scopus 로고    scopus 로고
    • Dynamics of global gene expression changes during mouse preimplantation development
    • Hamatani T., Carter M.G., Sharov A.A., Ko M.S.H. Dynamics of global gene expression changes during mouse preimplantation development. Dev. Cell 2004, 6:117-131.
    • (2004) Dev. Cell , vol.6 , pp. 117-131
    • Hamatani, T.1    Carter, M.G.2    Sharov, A.A.3    Ko, M.S.H.4
  • 16
    • 84895902585 scopus 로고    scopus 로고
    • The probability of drawing intersections: extending the hypergeometric distribution
    • Kalinka, A.T. (2013). The probability of drawing intersections: extending the hypergeometric distribution. arXiv, arXiv:1305.0717, http://arxiv.org/abs/1305.0717.
    • (2013)
    • Kalinka, A.T.1
  • 17
    • 84862204815 scopus 로고    scopus 로고
    • The evolution of early animal embryos: conservation or divergence?
    • Kalinka A.T., Tomancak P. The evolution of early animal embryos: conservation or divergence?. Trends Ecol. Evol. 2012, 27:385-393.
    • (2012) Trends Ecol. Evol. , vol.27 , pp. 385-393
    • Kalinka, A.T.1    Tomancak, P.2
  • 18
    • 0027386243 scopus 로고
    • The zebrafish midblastula transition
    • Kane D.A., Kimmel C.B. The zebrafish midblastula transition. Development 1993, 119:447-456.
    • (1993) Development , vol.119 , pp. 447-456
    • Kane, D.A.1    Kimmel, C.B.2
  • 19
  • 20
    • 84883134422 scopus 로고    scopus 로고
    • Pou5f1 transcription factor controls zygotic gene activation in vertebrates
    • Leichsenring M., Maes J., Mössner R., Driever W., Onichtchouk D. Pou5f1 transcription factor controls zygotic gene activation in vertebrates. Science 2013, 341:1005-1009.
    • (2013) Science , vol.341 , pp. 1005-1009
    • Leichsenring, M.1    Maes, J.2    Mössner, R.3    Driever, W.4    Onichtchouk, D.5
  • 22
    • 79952256180 scopus 로고    scopus 로고
    • Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq
    • Lott S.E., Villalta J.E., Schroth G.P., Luo S., Tonkin L.A., Eisen M.B. Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq. PLoS Biol. 2011, 9:e1000590.
    • (2011) PLoS Biol. , vol.9
    • Lott, S.E.1    Villalta, J.E.2    Schroth, G.P.3    Luo, S.4    Tonkin, L.A.5    Eisen, M.B.6
  • 25
    • 0017154513 scopus 로고
    • Ultrastructural patterns of RNA synthesis during early embryogenesis of Drosophila melanogaster
    • McKnight S.L., Miller O.L. Ultrastructural patterns of RNA synthesis during early embryogenesis of Drosophila melanogaster. Cell 1976, 8:305-319.
    • (1976) Cell , vol.8 , pp. 305-319
    • McKnight, S.L.1    Miller, O.L.2
  • 26
    • 84874013460 scopus 로고    scopus 로고
    • Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution
    • Neme R., Tautz D. Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution. BMC Genomics 2013, 14:117.
    • (2013) BMC Genomics , vol.14 , pp. 117
    • Neme, R.1    Tautz, D.2
  • 27
    • 84856473900 scopus 로고    scopus 로고
    • Maternal and paternal genomes contribute equally to the transcriptome of early plant embryos
    • Nodine M.D., Bartel D.P. Maternal and paternal genomes contribute equally to the transcriptome of early plant embryos. Nature 2012, 482:94-97.
    • (2012) Nature , vol.482 , pp. 94-97
    • Nodine, M.D.1    Bartel, D.P.2
  • 30
    • 84876872011 scopus 로고    scopus 로고
    • The hourglass and the early conservation models-co-existing patterns of developmental constraints in vertebrates
    • Piasecka B., Lichocki P., Moretti S., Bergmann S., Robinson-Rechavi M. The hourglass and the early conservation models-co-existing patterns of developmental constraints in vertebrates. PLoS Genet. 2013, 9:e1003476.
    • (2013) PLoS Genet. , vol.9
    • Piasecka, B.1    Lichocki, P.2    Moretti, S.3    Bergmann, S.4    Robinson-Rechavi, M.5
  • 31
    • 84877711740 scopus 로고    scopus 로고
    • Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern
    • Potok M.E., Nix D.A., Parnell T.J., Cairns B.R. Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern. Cell 2013, 153:759-772.
    • (2013) Cell , vol.153 , pp. 759-772
    • Potok, M.E.1    Nix, D.A.2    Parnell, T.J.3    Cairns, B.R.4
  • 33
    • 0026640111 scopus 로고
    • Loss of gene function through rapid mitotic cycles in the Drosophila embryo
    • Rothe M., Pehl M., Taubert H., Jäckle H. Loss of gene function through rapid mitotic cycles in the Drosophila embryo. Nature 1992, 359:156-159.
    • (1992) Nature , vol.359 , pp. 156-159
    • Rothe, M.1    Pehl, M.2    Taubert, H.3    Jäckle, H.4
  • 35
    • 0026006495 scopus 로고
    • Progression of the cell cycle through mitosis leads to abortion of nascent transcripts
    • Shermoen A.W., O'Farrell P.H. Progression of the cell cycle through mitosis leads to abortion of nascent transcripts. Cell 1991, 67:303-310.
    • (1991) Cell , vol.67 , pp. 303-310
    • Shermoen, A.W.1    O'Farrell, P.H.2
  • 38
    • 42049118334 scopus 로고    scopus 로고
    • Intron delays and transcriptional timing during development
    • Swinburne I.A., Silver P.A. Intron delays and transcriptional timing during development. Dev. Cell 2008, 14:324-330.
    • (2008) Dev. Cell , vol.14 , pp. 324-330
    • Swinburne, I.A.1    Silver, P.A.2
  • 39
    • 70350023619 scopus 로고    scopus 로고
    • The maternal-to-zygotic transition: a play in two acts
    • Tadros W., Lipshitz H.D. The maternal-to-zygotic transition: a play in two acts. Development 2009, 136:3033-3042.
    • (2009) Development , vol.136 , pp. 3033-3042
    • Tadros, W.1    Lipshitz, H.D.2
  • 40
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell C., Pachter L., Salzberg S.L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25:1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 43
    • 59949096873 scopus 로고    scopus 로고
    • EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
    • Vilella A.J., Severin J., Ureta-Vidal A., Heng L., Durbin R., Birney E. EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates. Genome Res. 2009, 19:327-335.
    • (2009) Genome Res. , vol.19 , pp. 327-335
    • Vilella, A.J.1    Severin, J.2    Ureta-Vidal, A.3    Heng, L.4    Durbin, R.5    Birney, E.6
  • 44
    • 84883134780 scopus 로고    scopus 로고
    • Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing
    • Xue Z., Huang K., Cai C., Cai L., Jiang C.-Y., Feng Y., Liu Z., Zeng Q., Cheng L., Sun Y.E., et al. Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing. Nature 2013, 500:593-597.
    • (2013) Nature , vol.500 , pp. 593-597
    • Xue, Z.1    Huang, K.2    Cai, C.3    Cai, L.4    Jiang, C.-Y.5    Feng, Y.6    Liu, Z.7    Zeng, Q.8    Cheng, L.9    Sun, Y.E.10
  • 46
    • 3342929529 scopus 로고    scopus 로고
    • Transcript profiling during preimplantation mouse development
    • Zeng F., Baldwin D.A., Schultz R.M. Transcript profiling during preimplantation mouse development. Dev. Biol. 2004, 272:483-496.
    • (2004) Dev. Biol. , vol.272 , pp. 483-496
    • Zeng, F.1    Baldwin, D.A.2    Schultz, R.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.