-
1
-
-
80052770972
-
The repatterning of eukaryotic genomes by random genetic drift
-
Lynch M., Bobay L.M., Catania F., Gout J.F., Rho M. The repatterning of eukaryotic genomes by random genetic drift. Annu. Rev. Genomics Hum. Genet. 2011, 12:347-366.
-
(2011)
Annu. Rev. Genomics Hum. Genet.
, vol.12
, pp. 347-366
-
-
Lynch, M.1
Bobay, L.M.2
Catania, F.3
Gout, J.F.4
Rho, M.5
-
2
-
-
33644847698
-
The evolution of spliceosomal introns: patterns, puzzles and progress
-
Roy S.W., Gilbert W. The evolution of spliceosomal introns: patterns, puzzles and progress. Nat. Rev. Genet. 2006, 7:211-221.
-
(2006)
Nat. Rev. Genet.
, vol.7
, pp. 211-221
-
-
Roy, S.W.1
Gilbert, W.2
-
3
-
-
0035941407
-
The complete gene sequence of titin, expression of an unusual approximately 700-kDa titin isoform, and its interaction with obscurin identify a novel Z-line to I-band linking system
-
Bang M.L., Centner T., Fornoff F., Geach A.J., Gotthardt M., McNabb M., Witt C.C., Labeit D., Gregorio C.C., Granzier H., Labeit S. The complete gene sequence of titin, expression of an unusual approximately 700-kDa titin isoform, and its interaction with obscurin identify a novel Z-line to I-band linking system. Circ. Res. 2001, 89:1065-1072.
-
(2001)
Circ. Res.
, vol.89
, pp. 1065-1072
-
-
Bang, M.L.1
Centner, T.2
Fornoff, F.3
Geach, A.J.4
Gotthardt, M.5
McNabb, M.6
Witt, C.C.7
Labeit, D.8
Gregorio, C.C.9
Granzier, H.10
Labeit, S.11
-
4
-
-
0029810306
-
Quality not quantity: the pufferfish genome
-
Elgar G. Quality not quantity: the pufferfish genome. Hum. Mol. Genet. 1996, 5(Spec No):1437-1442.
-
(1996)
Hum. Mol. Genet.
, vol.5
, Issue.SPEC. NO
, pp. 1437-1442
-
-
Elgar, G.1
-
6
-
-
12344291073
-
Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments
-
Johnson J.M., Edwards S., Shoemaker D., Schadt E.E. Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments. Trends Genet. 2005, 21:93-102.
-
(2005)
Trends Genet.
, vol.21
, pp. 93-102
-
-
Johnson, J.M.1
Edwards, S.2
Shoemaker, D.3
Schadt, E.E.4
-
8
-
-
16844364675
-
E-cadherin intron 2 contains cis-regulatory elements essential for gene expression
-
Stemmler M.P., Hecht A., Kemler R. E-cadherin intron 2 contains cis-regulatory elements essential for gene expression. Development 2005, 132:965-976.
-
(2005)
Development
, vol.132
, pp. 965-976
-
-
Stemmler, M.P.1
Hecht, A.2
Kemler, R.3
-
9
-
-
51149120433
-
Intron-mediated regulation of gene expression
-
Rose A.B. Intron-mediated regulation of gene expression. Curr. Top. Microbiol. Immunol. 2008, 326:277-290.
-
(2008)
Curr. Top. Microbiol. Immunol.
, vol.326
, pp. 277-290
-
-
Rose, A.B.1
-
10
-
-
0025309404
-
Regulatory elements in the introns of the human HPRT gene are necessary for its expression in embryonic stem cells
-
Reid L.H., Gregg R.G., Smithies O., Koller B.H. Regulatory elements in the introns of the human HPRT gene are necessary for its expression in embryonic stem cells. Proc. Natl. Acad. Sci. USA 1990, 87:4299-4303.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 4299-4303
-
-
Reid, L.H.1
Gregg, R.G.2
Smithies, O.3
Koller, B.H.4
-
11
-
-
0033452570
-
Choline acetyltransferase: the structure, distribution and pathologic changes in the central nervous system
-
Oda Y. Choline acetyltransferase: the structure, distribution and pathologic changes in the central nervous system. Pathol. Int. 1999, 49:921-937.
-
(1999)
Pathol. Int.
, vol.49
, pp. 921-937
-
-
Oda, Y.1
-
12
-
-
80053384136
-
IGD: a resource for intronless genes in the human genome
-
Louhichi A., Fourati A., Rebai A. IGD: a resource for intronless genes in the human genome. Gene 2011, 488:35-40.
-
(2011)
Gene
, vol.488
, pp. 35-40
-
-
Louhichi, A.1
Fourati, A.2
Rebai, A.3
-
13
-
-
70350512023
-
Alternative splicing of G protein-coupled receptors: physiology and pathophysiology
-
Markovic D., Challiss R.A. Alternative splicing of G protein-coupled receptors: physiology and pathophysiology. Cell. Mol. Life Sci. 2009, 66:3337-3352.
-
(2009)
Cell. Mol. Life Sci.
, vol.66
, pp. 3337-3352
-
-
Markovic, D.1
Challiss, R.A.2
-
14
-
-
33846474121
-
G-protein-coupled receptors and cancer
-
Dorsam R.T., Gutkind J.S. G-protein-coupled receptors and cancer. Nat. Rev. Cancer 2007, 7:79-94.
-
(2007)
Nat. Rev. Cancer
, vol.7
, pp. 79-94
-
-
Dorsam, R.T.1
Gutkind, J.S.2
-
15
-
-
77954968805
-
Distinct patterns of expression and evolution of intronless and intron-containing mammalian genes
-
Shabalina S.A., Ogurtsov A.Y., Spiridonov A.N., Novichkov P.S., Spiridonov N.A., Koonin E.V. Distinct patterns of expression and evolution of intronless and intron-containing mammalian genes. Mol. Biol. Evol. 2010, 27:1745-1749.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 1745-1749
-
-
Shabalina, S.A.1
Ogurtsov, A.Y.2
Spiridonov, A.N.3
Novichkov, P.S.4
Spiridonov, N.A.5
Koonin, E.V.6
-
16
-
-
56449118064
-
Retrocopy contributions to the evolution of the human genome
-
Baertsch R., Diekhans M., Kent W.J., Haussler D., Brosius J. Retrocopy contributions to the evolution of the human genome. BMC Genomics 2008, 9:466.
-
(2008)
BMC Genomics
, vol.9
, pp. 466
-
-
Baertsch, R.1
Diekhans, M.2
Kent, W.J.3
Haussler, D.4
Brosius, J.5
-
17
-
-
34247344319
-
Retrotransposable elements and human disease
-
Callinan P.A., Batzer M.A. Retrotransposable elements and human disease. Genome Dyn. 2006, 1:104-115.
-
(2006)
Genome Dyn.
, vol.1
, pp. 104-115
-
-
Callinan, P.A.1
Batzer, M.A.2
-
18
-
-
27844557002
-
Emergence of young human genes after a burst of retroposition in primates
-
Marques A.C., Dupanloup I., Vinckenbosch N., Reymond A., Kaessmann H. Emergence of young human genes after a burst of retroposition in primates. PLoS Biol. 2005, 3:e357.
-
(2005)
PLoS Biol.
, vol.3
-
-
Marques, A.C.1
Dupanloup, I.2
Vinckenbosch, N.3
Reymond, A.4
Kaessmann, H.5
-
19
-
-
57749177443
-
RNA-based gene duplication: mechanistic and evolutionary insights
-
Kaessmann H., Vinckenbosch N., Long M. RNA-based gene duplication: mechanistic and evolutionary insights. Nat. Rev. Genet. 2009, 10:19-31.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 19-31
-
-
Kaessmann, H.1
Vinckenbosch, N.2
Long, M.3
-
20
-
-
1342308231
-
X chromosomes, retrogenes and their role in male reproduction
-
Wang P.J. X chromosomes, retrogenes and their role in male reproduction. Trends Endocrinol. Metab. 2004, 15:79-83.
-
(2004)
Trends Endocrinol. Metab.
, vol.15
, pp. 79-83
-
-
Wang, P.J.1
-
21
-
-
0242422377
-
Mitochondrial ferritin: a new player in iron metabolism
-
Drysdale J., Arosio P., Invernizzi R., Cazzola M., Volz A., Corsi B., Biasiotto G., Levi S. Mitochondrial ferritin: a new player in iron metabolism. Blood Cells Mol. Dis. 2002, 29:376-383.
-
(2002)
Blood Cells Mol. Dis.
, vol.29
, pp. 376-383
-
-
Drysdale, J.1
Arosio, P.2
Invernizzi, R.3
Cazzola, M.4
Volz, A.5
Corsi, B.6
Biasiotto, G.7
Levi, S.8
-
22
-
-
0036010641
-
An element in the 3' untranslated region of human LINE-1 retrotransposon mRNA binds NXF1(TAP) and can function as a nuclear export element
-
Lindtner S., Felber B.K., Kjems J. An element in the 3' untranslated region of human LINE-1 retrotransposon mRNA binds NXF1(TAP) and can function as a nuclear export element. RNA 2002, 8:345-356.
-
(2002)
RNA
, vol.8
, pp. 345-356
-
-
Lindtner, S.1
Felber, B.K.2
Kjems, J.3
-
23
-
-
0037041395
-
An extensive network of coupling among gene expression machines
-
Maniatis T., Reed R. An extensive network of coupling among gene expression machines. Nature 2002, 416:499-506.
-
(2002)
Nature
, vol.416
, pp. 499-506
-
-
Maniatis, T.1
Reed, R.2
-
24
-
-
60149110358
-
Pre-mRNA processing reaches back to transcription and ahead to translation
-
Moore M.J., Proudfoot N.J. Pre-mRNA processing reaches back to transcription and ahead to translation. Cell 2009, 136:688-700.
-
(2009)
Cell
, vol.136
, pp. 688-700
-
-
Moore, M.J.1
Proudfoot, N.J.2
-
25
-
-
0036472015
-
The human intronless melanocortin 4-receptor gene is NMD insensitive
-
Brocke K.S., Neu-Yilik G., Gehring N.H., Hentze M.W., Kulozik A.E. The human intronless melanocortin 4-receptor gene is NMD insensitive. Hum. Mol. Genet. 2002, 11:331-335.
-
(2002)
Hum. Mol. Genet.
, vol.11
, pp. 331-335
-
-
Brocke, K.S.1
Neu-Yilik, G.2
Gehring, N.H.3
Hentze, M.W.4
Kulozik, A.E.5
-
26
-
-
0035028094
-
Mammalian heat shock p70 and histone H4 transcripts, which derive from naturally intronless genes, are immune to nonsense-mediated decay
-
Maquat L.E., Li X. Mammalian heat shock p70 and histone H4 transcripts, which derive from naturally intronless genes, are immune to nonsense-mediated decay. RNA 2001, 7:445-456.
-
(2001)
RNA
, vol.7
, pp. 445-456
-
-
Maquat, L.E.1
Li, X.2
-
27
-
-
81055126291
-
Export and stability of naturally intronless mRNAs require specific coding region sequences and the TREX mRNA export complex
-
Lei H., Dias A.P., Reed R. Export and stability of naturally intronless mRNAs require specific coding region sequences and the TREX mRNA export complex. Proc. Natl. Acad. Sci. USA 2011, 108:17985-17990.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 17985-17990
-
-
Lei, H.1
Dias, A.P.2
Reed, R.3
-
28
-
-
0034758864
-
Role of polypyrimidine tract binding protein in the function of the hepatitis B virus posttranscriptional regulatory element
-
Zang W.Q., Li B., Huang P.Y., Lai M.M., Yen T.S. Role of polypyrimidine tract binding protein in the function of the hepatitis B virus posttranscriptional regulatory element. J. Virol. 2001, 75:10779-10786.
-
(2001)
J. Virol.
, vol.75
, pp. 10779-10786
-
-
Zang, W.Q.1
Li, B.2
Huang, P.Y.3
Lai, M.M.4
Yen, T.S.5
-
29
-
-
0029142841
-
HnRNP L binds a cis-acting RNA sequence element that enables intron-dependent gene expression
-
Liu X., Mertz J.E. HnRNP L binds a cis-acting RNA sequence element that enables intron-dependent gene expression. Genes Dev. 1995, 9:1766-1780.
-
(1995)
Genes Dev.
, vol.9
, pp. 1766-1780
-
-
Liu, X.1
Mertz, J.E.2
-
30
-
-
0035061509
-
Constitutive transport element-mediated nuclear export
-
Hammarskjold M.L. Constitutive transport element-mediated nuclear export. Curr. Top. Microbiol. Immunol. 2001, 259:77-93.
-
(2001)
Curr. Top. Microbiol. Immunol.
, vol.259
, pp. 77-93
-
-
Hammarskjold, M.L.1
-
31
-
-
0033818905
-
Rous sarcoma virus DR posttranscriptional elements use a novel RNA export pathway
-
Paca R.E., Ogert R.A., Hibbert C.S., Izaurralde E., Beemon K.L. Rous sarcoma virus DR posttranscriptional elements use a novel RNA export pathway. J. Virol. 2000, 74:9507-9514.
-
(2000)
J. Virol.
, vol.74
, pp. 9507-9514
-
-
Paca, R.E.1
Ogert, R.A.2
Hibbert, C.S.3
Izaurralde, E.4
Beemon, K.L.5
-
33
-
-
17644375511
-
Pre-mRNA processing enhancer (PPE) elements from intronless genes play additional roles in mRNA biogenesis than do ones from intron-containing genes
-
Guang S., Mertz J.E. Pre-mRNA processing enhancer (PPE) elements from intronless genes play additional roles in mRNA biogenesis than do ones from intron-containing genes. Nucleic Acids Res. 2005, 33:2215-2226.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2215-2226
-
-
Guang, S.1
Mertz, J.E.2
-
34
-
-
0033135976
-
The human Tap protein is a nuclear mRNA export factor that contains novel RNA-binding and nucleocytoplasmic transport sequences
-
Kang Y., Cullen B.R. The human Tap protein is a nuclear mRNA export factor that contains novel RNA-binding and nucleocytoplasmic transport sequences. Genes Dev. 1999, 13:1126-1139.
-
(1999)
Genes Dev.
, vol.13
, pp. 1126-1139
-
-
Kang, Y.1
Cullen, B.R.2
-
35
-
-
0036892520
-
ICP27 interacts with the RNA export factor Aly/REF to direct herpes simplex virus type 1 intronless mRNAs to the TAP export pathway
-
Chen I.H., Sciabica K.S., Sandri-Goldin R.M. ICP27 interacts with the RNA export factor Aly/REF to direct herpes simplex virus type 1 intronless mRNAs to the TAP export pathway. J. Virol. 2002, 76:12877-12889.
-
(2002)
J. Virol.
, vol.76
, pp. 12877-12889
-
-
Chen, I.H.1
Sciabica, K.S.2
Sandri-Goldin, R.M.3
-
36
-
-
3042635320
-
CRM1-dependent, but not ARE-mediated, nuclear export of IFN-alpha1 mRNA
-
Kimura T., Hashimoto I., Nagase T., Fujisawa J. CRM1-dependent, but not ARE-mediated, nuclear export of IFN-alpha1 mRNA. J. Cell Sci. 2004, 117:2259-2270.
-
(2004)
J. Cell Sci.
, vol.117
, pp. 2259-2270
-
-
Kimura, T.1
Hashimoto, I.2
Nagase, T.3
Fujisawa, J.4
-
37
-
-
0034597057
-
Protein ligands to HuR modulate its interaction with target mRNAs in vivo
-
Brennan C.M., Gallouzi I.E., Steitz J.A. Protein ligands to HuR modulate its interaction with target mRNAs in vivo. J. Cell Biol. 2000, 151:1-14.
-
(2000)
J. Cell Biol.
, vol.151
, pp. 1-14
-
-
Brennan, C.M.1
Gallouzi, I.E.2
Steitz, J.A.3
-
38
-
-
0037474226
-
Leptomycin B, an inhibitor of the nuclear export receptor CRM1, inhibits COX-2 expression
-
Jang B.C., Munoz-Najar U., Paik J.H., Claffey K., Yoshida M., Hla T. Leptomycin B, an inhibitor of the nuclear export receptor CRM1, inhibits COX-2 expression. J. Biol. Chem. 2003, 278:2773-2776.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 2773-2776
-
-
Jang, B.C.1
Munoz-Najar, U.2
Paik, J.H.3
Claffey, K.4
Yoshida, M.5
Hla, T.6
-
39
-
-
33750681957
-
EIF4E is a central node of an RNA regulon that governs cellular proliferation
-
Culjkovic B., Topisirovic I., Skrabanek L., Ruiz-Gutierrez M., Borden K.L. EIF4E is a central node of an RNA regulon that governs cellular proliferation. J. Cell Biol. 2006, 175:415-426.
-
(2006)
J. Cell Biol.
, vol.175
, pp. 415-426
-
-
Culjkovic, B.1
Topisirovic, I.2
Skrabanek, L.3
Ruiz-Gutierrez, M.4
Borden, K.L.5
-
40
-
-
33646078931
-
Stimulated expression of mRNAs in activated T cells depends on a functional CRM1 nuclear export pathway
-
Schutz S., Chemnitz J., Spillner C., Frohme M., Hauber J., Kehlenbach R.H. Stimulated expression of mRNAs in activated T cells depends on a functional CRM1 nuclear export pathway. J. Mol. Biol. 2006, 358:997-1009.
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 997-1009
-
-
Schutz, S.1
Chemnitz, J.2
Spillner, C.3
Frohme, M.4
Hauber, J.5
Kehlenbach, R.H.6
-
41
-
-
62049085851
-
Adaptor Aly and co-adaptor Thoc5 function in the Tap-p15-mediated nuclear export of HSP70 mRNA
-
Katahira J., Inoue H., Hurt E., Yoneda Y. Adaptor Aly and co-adaptor Thoc5 function in the Tap-p15-mediated nuclear export of HSP70 mRNA. EMBO J. 2009, 28:556-567.
-
(2009)
EMBO J.
, vol.28
, pp. 556-567
-
-
Katahira, J.1
Inoue, H.2
Hurt, E.3
Yoneda, Y.4
-
42
-
-
11144335418
-
Nuclear export of metazoan replication-dependent histone mRNAs is dependent on RNA length and is mediated by TAP
-
Erkmann J.A., Sanchez R., Treichel N., Marzluff W.F., Kutay U. Nuclear export of metazoan replication-dependent histone mRNAs is dependent on RNA length and is mediated by TAP. RNA 2005, 11:45-58.
-
(2005)
RNA
, vol.11
, pp. 45-58
-
-
Erkmann, J.A.1
Sanchez, R.2
Treichel, N.3
Marzluff, W.F.4
Kutay, U.5
-
43
-
-
0030886617
-
The mouse histone H2a gene contains a small element that facilitates cytoplasmic accumulation of intronless gene transcripts and of unspliced HIV-1-related mRNAs
-
Huang Y., Carmichael G.G. The mouse histone H2a gene contains a small element that facilitates cytoplasmic accumulation of intronless gene transcripts and of unspliced HIV-1-related mRNAs. Proc. Natl. Acad. Sci. USA 1997, 94:10104-10109.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 10104-10109
-
-
Huang, Y.1
Carmichael, G.G.2
-
44
-
-
0344211508
-
SR splicing factors serve as adapter proteins for TAP-dependent mRNA export
-
Huang Y., Gattoni R., Stevenin J., Steitz J.A. SR splicing factors serve as adapter proteins for TAP-dependent mRNA export. Mol. Cell 2003, 11:837-843.
-
(2003)
Mol. Cell
, vol.11
, pp. 837-843
-
-
Huang, Y.1
Gattoni, R.2
Stevenin, J.3
Steitz, J.A.4
-
45
-
-
0023790358
-
Comparison of intron-dependent and intron-independent gene expression
-
Buchman A.R., Berg P. Comparison of intron-dependent and intron-independent gene expression. Mol. Cell. Biol. 1988, 8:4395-4405.
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 4395-4405
-
-
Buchman, A.R.1
Berg, P.2
-
46
-
-
0024443981
-
Simian virus 40 late transcripts lacking excisable intervening sequences are defective in both stability in the nucleus and transport to the cytoplasm
-
Ryu W.S., Mertz J.E. Simian virus 40 late transcripts lacking excisable intervening sequences are defective in both stability in the nucleus and transport to the cytoplasm. J. Virol. 1989, 63:4386-4394.
-
(1989)
J. Virol.
, vol.63
, pp. 4386-4394
-
-
Ryu, W.S.1
Mertz, J.E.2
-
47
-
-
0037406116
-
A quantitative analysis of intron effects on mammalian gene expression
-
Nott A., Meislin S.H., Moore M.J. A quantitative analysis of intron effects on mammalian gene expression. RNA 2003, 9:607-617.
-
(2003)
RNA
, vol.9
, pp. 607-617
-
-
Nott, A.1
Meislin, S.H.2
Moore, M.J.3
-
48
-
-
0037407941
-
Analysis of the stimulatory effect of splicing on mRNA production and utilization in mammalian cells
-
Lu S., Cullen B.R. Analysis of the stimulatory effect of splicing on mRNA production and utilization in mammalian cells. RNA 2003, 9:618-630.
-
(2003)
RNA
, vol.9
, pp. 618-630
-
-
Lu, S.1
Cullen, B.R.2
-
49
-
-
33645771977
-
Nucleocytoplasmic transport of fluorescent mRNA in living mammalian cells: nuclear mRNA export is coupled to ongoing gene transcription
-
Tokunaga K., Shibuya T., Ishihama Y., Tadakuma H., Ide M., Yoshida M., Funatsu T., Ohshima Y., Tani T. Nucleocytoplasmic transport of fluorescent mRNA in living mammalian cells: nuclear mRNA export is coupled to ongoing gene transcription. Genes Cells 2006, 11:305-317.
-
(2006)
Genes Cells
, vol.11
, pp. 305-317
-
-
Tokunaga, K.1
Shibuya, T.2
Ishihama, Y.3
Tadakuma, H.4
Ide, M.5
Yoshida, M.6
Funatsu, T.7
Ohshima, Y.8
Tani, T.9
-
50
-
-
42149178405
-
Splicing promotes rapid and efficient mRNA export in mammalian cells
-
Valencia P., Dias A.P., Reed R. Splicing promotes rapid and efficient mRNA export in mammalian cells. Proc. Natl. Acad. Sci. USA 2008, 105:3386-3391.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 3386-3391
-
-
Valencia, P.1
Dias, A.P.2
Reed, R.3
-
51
-
-
67650670688
-
Nucleocytoplasmic transport of luciferase gene mRNA requires CRM1/Exportin1 and RanGTPase
-
Kimura T., Hashimoto I., Nishikawa M., Yamada H. Nucleocytoplasmic transport of luciferase gene mRNA requires CRM1/Exportin1 and RanGTPase. Med. Mol. Morphol. 2009, 42:70-81.
-
(2009)
Med. Mol. Morphol.
, vol.42
, pp. 70-81
-
-
Kimura, T.1
Hashimoto, I.2
Nishikawa, M.3
Yamada, H.4
-
52
-
-
70349786356
-
A dual reporter approach to quantify defects in messenger RNA processing
-
Banerjee A., Sammarco M.C., Ditch S., Grabczyk E. A dual reporter approach to quantify defects in messenger RNA processing. Anal. Biochem. 2009, 395:237-243.
-
(2009)
Anal. Biochem.
, vol.395
, pp. 237-243
-
-
Banerjee, A.1
Sammarco, M.C.2
Ditch, S.3
Grabczyk, E.4
|