Transcript profiling during preimplantation mouse development

Developmental Biology

Volumn 272, Issue 2, 2004, Pages 483-496

  Zeng, Fanyi ^a   Baldwin, Don A ^a   Schultz, Richard M ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

Blastocyst; Compaction; Gene expression; Genome activation; Maternal mRNA; Microarray

Indexed keywords

DNA; RNA;

ANIMAL CELL; ARTICLE; BLASTOCYST; DEVELOPMENTAL STAGE; DNA DAMAGE; DNA MICROARRAY; DNA REPAIR; EMBRYO; EMBRYO DEVELOPMENT; FERTILIZATION; GENE ACTIVATION; GENE EXPRESSION; GENETIC IDENTIFICATION; GENETIC TRANSCRIPTION; GENOME; HYPOTHESIS; MOUSE; NONHUMAN; OOCYTE; PREIMPLANTATION EMBRYO; PRESSURE; PRIORITY JOURNAL; RNA PROCESSING; VALIDATION PROCESS;

EID: 3342929529     PISSN: 00121606     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ydbio.2004.05.018     Document Type: Article

References (70)

1. Adenot P.G., Mercier Y., Renard J.-P., Thompson E.M. Differential H4 acetylation of paternal and maternal chromatin precedes DNA replication and differential transcriptional activity in pronuclei of 1-cell mouse embryos. Development. 124:1997;4615-4625
2. Aoki E., Schultz R.M. DNA replication in the 1-cell mouse embryo: stimulatory effect of histone acetylation. Zygote. 7:1999;165-172
3. Aoki F., Worrad D.M., Schultz R.M. Regulation of transcriptional activity during the first and second cell cycles in the preimplantation mouse embryo. Dev. Biol. 181:1997;296-307
4. Aoki F., Hara K.T., Schultz R.M. Acquisition of transcriptional competence in the 1-cell mouse embryo: requirement for recruitment of maternal mRNAs. Mol. Reprod. Dev. 64:2003;270-274
5. Beck F., Erler T., Russell A., James R. Expression of Cdx-2 in the mouse embryo and placenta: possible role in patterning of the extra-embryonic membranes. Dev. Dyn. 204:1995;219-227
6. Biggers J.D., Bell J.E., Benos D.J. Mammalian blastocyst: transport functions in a developing epithelium. Am. J. Physiol. 255:1988;C419-C432
7. Bolton V.N., Oades P.J., Johnson M.H. The relationship between cleavage, DNA replication, and gene expression in the mouse 2-cell embryo. J. Embryol. Exp. Morphol. 79:1984;139-163
8. Bouniol C., Nguyen E., Debey P. Endogenous transcription occurs at the 1-cell stage in the mouse embryo. Exp. Cell Res. 218:1995;57-62
9. Calarco P.G., Brown E.H. An ultrastructural and cytological study of preimplantation development of the mouse. J. Exp. Zool. 171:1969;253-283
10. Christians E., Campion E., Thompson E.M., Renard J.-P. Expression of the HSP 70.1 gene, a landmark of early zygotic gene activity in the mouse embryo, is restricted to the first burst of transcription. Development. 121:1995;113-122
11. Davis W. Jr., Schultz R.M. Developmental change in TATA-box utilization during preimplantation mouse development. Dev. Biol. 218:2000;275-283
12. Davis W. Jr., DeSousa P.D., Schultz R.M. Transient expression of translation initiation factor eIF-4C during the 2-cell stage of the preimplantation mouse embryo: identification by mRNA differential display and the role of DNA replication. Dev. Biol. 181:1996;296-307
13. Doherty A.S., Mann M.R., Tremblay K.D., Bartolomei M.S., Schultz R.M. Differential effects of culture on imprinted H19 expression in the preimplantation mouse embryo. Biol. Reprod. 62:2000;1526-1535
14. Epstein C.J., Smith S.A. Amino acid uptake and protein synthesis in preimplantation mouse embryos. Dev. Biol. 33:1973;171-184
15. Featherstone C., Jackson S.P. Ku, a DNA repair protein with multiple cellular functions? Mutat. Res. 434:1999;3-15
16. Fleming T.P., Sheth B., Fesenko I. Cell adhesion in the preimplantation mammalian embryo and its role in trophectoderm differentiation and blastocyst morphogenesis. Front. Biosci. 6:2001;D1000-D1007
17. Gardiner C.S., Williams J.S., Menino A.R. Jr. Sodium/potassium adenosine triphosphatase α- and β-subunit and α-subunit mRNA levels during mouse development in vitro. Biol. Reprod. 43:1990;788-794
18. Gardner D.K. Changes in requirements and utilization of nutrients during mammalian preimplantation embryo development and their significance in embryo culture. Theriogenology. 49:1998;83-102
19. Ginsberg L., Hillman N. Shifts in ATP synthesis during preimplantation stages of mouse embryos. J. Reprod. Fertil. 43:1975;83-90
20. Hamatani T., Carter M.G., Sharov A.A., Ko M.S. Dynamics of global gene expression changes during mouse preimplantation development. Dev. Cell. 6:2004;117-131
21. Handyside A.H. Time of commitment of inside cells isolated from preimplantation mouse embryos. J. Embryol. Exp. Morphol. 45:1978;37-53
22. Hartshorn C., Rice J.E., Wangh L.J. Developmentally-regulated changes of Xist RNA levels in single preimplantation mouse embryos, as revealed by quantitative real-time PCR. Mol. Reprod. Dev. 61:2002;425-436
23. Ho Y., Doherty A.S., Schultz R.M. Mouse preimplantation embryo development in vitro: effect of sodium concentration in culture media on RNA synthesis and accumulation and gene expression. Mol. Reprod. Dev. 38:1994;131-141
24. Hosack D.A., Dennis G. Jr., Sherman B.T., Lane H.C., Lempicki R.A. Identifying biological themes within lists of genes with EASE. Genome Biol. 4:2003;R70
25. Hyafil F., Babinet C., Jacob F. Cell-cell interactions in early embryogenesis: a molecular approach to the role of calcium. Cell. 26:1981;447-454
26. Johnson M.H., Maro B. Time and space in the mouse early embryo: a cell biological approach to cell diversification. Rossant J., Pedersen R.A. Experimental Approaches to Mammalian Embryonic Development. 1986;35-65 Cambridge Univ. Press, Cambridge
27. Kidder G.M., Winterhager E. Intercellular communication in preimplantation development: the role of gap junctions. Front. Biosci. 6:2001;D731-D736
28. Kigami D., Minami N., Takayama H., Imai H. MuERV-L is one of the earliest transcribed genes in mouse one-cell embryos. Biol. Reprod. 68:2003;651-654
29. Ko M.S., Kitchen J.R., Wang X., Threat T.A., Hasegawa A., Sun T., Grahovac M.J., Kargul G.J., Lim M.K., Cui Y., Sano Y., Tanaka T., Liang Y., Mason S., Paonessa P.D., Sauls A.D., DePalma G.E., Sharara R., Rowe L.B., Eppig J., Morrell C., Doi H. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 127:2000;1737-1749
30. LaMarca M.J., Wassarman P.M. Program of early development in the mammal: changes in the absolute rates of synthesis of ribosomal proteins during oogenesis and early embryogenesis in the mouse. Dev. Biol. 73:1979;103-119
31. Latham K.E., Garrels J.I., Chang C., Solter D. Quantitative analysis of protein synthesis in mouse embryos: I. Extensive reprogramming at the one- and two-cell stages. Development. 112:1991;921-932
32. Latham K.E., Solter D., Schultz R.M. Acquisition of a transcriptionally permissive state during the 1-cell stage of mouse embryogenesis. Dev. Biol. 149:1992;457-462
33. Latham K.E., Rambhatla L., Hayashizaki Y., Chapman V.M. Stage-specific induction and regulation by genomic imprinting of the mouse U2afbp-rs gene during preimplantation development. Dev. Biol. 168:1995;670-676
34. Ma J., Svoboda P., Schultz R.M., Stein P. Regulation of zygotic gene activation in the preimplantation mouse embryo: global activation and repression of gene expression. Biol. Reprod. 64:2001;1713-1721
35. Majumder S., DePamphilis M.L. TATA-dependent enhancer stimulation of promoter activity in mice is developmentally acquired. Mol. Cell. Biol. 14:1994;4258-4268
36. Majumder S., DePamphilis M.L. A unique role for enhancers is revealed during early mouse development. BioEssays. 17:1995;879-889
37. Matsumoto K., Anzai M., Nakagata N., Takahashi A., Takahashi Y., Miyata K. Onset of paternal gene activation in early mouse embryos fertilized with transgenic mouse sperm. Mol. Reprod. Dev. 39:1994;136-140
38. Matzuk M.M., Burns K.H., Viveiros M.M., Eppig J.J. Intercellular communication in the mammalian ovary: oocytes carry the conversation. Science. 296:2002;2178-2180
39. Nichols J., Zevnik B., Anastassiadis K., Niwa H., Klewe-Nebenius D., Chambers I., Scholer H., Smith A. Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct 4. Cell. 95:1998;379-391
40. Niswander L., Martin G.R. Fgf-4 expression during gastrulation, myogenesis, limb and tooth development in the mouse. Development. 114:1992;755-768
41. Niwa H., Miyazaki J., Smith A.G. Quantitative expression of oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells. Nat. Genet. 24:2000;372-376
42. Oh B., Hwang S., McLaughlin J., Solter D., Knowles B.B. Timely translation during the mouse oocyte-to-embryo transition. Development. 127:2000;3795-3803
43. Oswald J., Engemann S., Lane N., Mayer W., Olek A., Fundele R., Dean W., Reik W., Walter J. Active demethylation of the paternal genome in the mouse zygote. Curr. Biol. 10:2000;475-478
44. Palmieri S.L., Peter W., Hess H., Schöler H.R. Oct-4 transcription factor is differentially expressed in the mouse embryo during the establishment of the first two extraembryonic cell lineages involved in implantation. Dev. Biol. 166:1994;259-267
45. Pedersen R.A. Potency, lineage, and allocation in preimplantation mouse embryos. Rossant J., Pedersen R.A. Experimental Approaches to Mammalian Embryonic Development. 1986;143-156 Cambridge Univ. Press, Cambridge
46. Pesce M., Scholer H.R. Oct-4: control of totipotency and germline determination. Mol. Reprod. Dev. 55:2000;452-457
47. Pikó L., Taylor K.D. Amounts of mitochondrial DNA and abundance of some mitochondrial gene transcripts in early embryos. Dev. Biol. 123:1987;364-374
48. Poueymirou W.T., Schultz R.M. Regulation of mouse preimplantation development: inhibition of synthesis of proteins in the two-cell embryo that require transcription by inhibitors of cAMP-dependent protein kinase. Dev. Biol. 133:1989;588-599
49. Ram P.T., Schultz R.M. Reporter gene expression in G2 of the 1-cell mouse embryo. Dev. Biol. 156:1993;552-556
50. Santos F., Hendrich B., Reik W., Dean W. Dynamic reprogramming of DNA methylation in the early mouse embryo. Dev. Biol. 241:2002;172-182
51. Schultz R.M. Regulation of zygotic gene activation in the mouse. BioEssays. 15:1993;531-538
52. Schultz R.M. The molecular foundations of the maternal to zygotic transition in the preimplantation embryo. Hum. Reprod. Updat. 8:2002;323-331
53. Schultz R.M., Letourneau G.E., Wassarman P.M. Program of early development in the mammal: changes in patterns and absolute rates of tubulin and total protein synthesis during oogenesis and early embryogenesis in the mouse. Dev. Biol. 68:1979;341-359
54. Sharov A.A., Piao Y., Matoba R., Dudekula D.B., Qian Y., VanBuren V., Falco G., Martin P.R., Stagg C.A., Bassey U.C., Wang Y., Carter M.G., Hamatani T., Aiba K., Akutsu H., Sharova L., Tanaka T.S., Kimber W.L., Yoshikawa T., Jaradat S.A., Pantano S., Nagaraja R., Boheler K.R., Taub D., Hodes R.J., Longo D.L., Schlessinger D., Keller J., Klotz E., Kelsoe G., Umezawa A., Vescovi A.L., Rossant J., Kunath T., Hogan B.L., Curci A., D'Urso M., Kelso J., Hide W., Ko M.S. Transcriptome analysis of mouse stem cells and early embryos. PLoS Biol. 1:2003;410-419
55. Sung P., Krejci L., Van Komen S., Sehorn M.G. Rad51 recombinase and recombination mediators. J. Biol. Chem. 278:2003;42729-42732
56. Tanaka M., Hennebold J.D., Macfarlane J., Adashi E.Y. A mammalian oocyte-specific linker histone gene H1oo: homology with the genes for the oocyte-specific cleavage stage histone (cs-H1) of sea urchin and the B4/H1M histone of the frog. Development. 128:2001;655-664
57. Taylor K.D., Piko L. Mitochondrial biogenesis in early mouse embryos: expression of the mRNAs for subunits IV, Vb, and VIIc of cytochrome c oxidase and subunit 9 (P1) of H(+)-ATP synthase. Mol. Reprod. Dev. 40:1995;29-35
58. Trimarchi J.R., Liu L., Porterfield D.M., Smith P.J., Keefe D.L. Oxidative phosphorylation-dependent and-independent oxygen consumption by individual preimplantation mouse embryos. Biol. Reprod. 62:2000;1866-1874
59. Van Blerkom J. Structural relationship and posttranslational modification of stage-specific proteins synthesized during early preimplantation development in the mouse. Proc. Natl. Acad. Sci. U.S.A. 78:1981;7629-7633
60. van Blerkom J., Brockway G.O. Qualitative patterns of protein synthesis in the preimplantation mouse embryo: I. Normal pregnancy. Dev. Biol. 44:1975;148-157
61. Wang Q., Chung Y.G., deVries W.N., Struwe M., Latham K.E. Role of protein synthesis in the development of a transcriptionally permissive state in one-cell stage mouse embryos. Biol. Reprod. 65:2001;748-754
62. Wang Q.T., Piotrowska K., Ciemerych M.A., Milenkovic L., Scott M.P., Davis R.W., Zernicka-Goetz M. A genome-wide study of gene activity reveals developmental signaling pathways in the preimplantation mouse embryo. Dev. Cell. 6:2004;133-144
63. Waterston R.H., Lindblad-Toh K., Birney E., Rogers J., Abril J.F., Agarwal P., Agarwala R., Ainscough R., Alexandersson M., An P., Antonarakis S.E., Attwood J., Baertsch R., Bailey J., Barlow K., Beck S., Berry E., Birren B., Bloom T., Bork P., Botcherby M., Bray N., Brent M.R., Brown D.G., Brown S.D., Bult C., Burton J., Butler J., Campbell R.D., Carninci P., Cawley S., Chiaromonte F., Chinwalla A.T., Church D.M., Clamp M., Clee C., Collins F.S., Cook L.L., Copley R.R., Coulson A., Couronne O., Cuff J., Curwen V., Cutts T., Daly M., David R., Davies J., Delehaunty K.D., Deri J., Dermitzakis E.T., Dewey C., Dickens N.J., Diekhans M., Dodge S., Dubchak I., Dunn D.M., Eddy S.R., Elnitski L., Emes R.D., Eswara P., Eyras E., Felsenfeld A., Fewell G.A., Flicek P., Foley K., Frankel W.N., Fulton L.A., Fulton R.S., Furey T.S., Gage D., Gibbs R.A., Glusman G., Gnerre S., Goldman N., Goodstadt L., Grafham D., Graves T.A., Green E.D., Gregory S., Guigo R., Guyer M., Hardison R.C., Haussler D., Hayashizaki Y., Hillier L.W., Hinrichs A., Hlavina W., Holzer T., Hsu F., Hua A., Hubbard T., Hunt A., Jackson I., Jaffe D.B., Johnson L.S., Jones M., Jones T.A., Joy A., Kamal M., Karlsson E.K., et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420:2002;520-562
64. Watson A.J., Barcroft L.C. Regulation of blastocyst formation. Front. Biosci. 6:2001;D708-D730
65. Williams C.J., Schultz R.M., Kopf G.S. G protein gene expression during mouse oocyte growth and maturation, and preimplantation embryo development. Mol. Reprod. Dev. 44:1996;315-323
66. Williams J.W., Hawes S.M., Patel B., Latham K.E. Trophectoderm-specific expression of the X-linked Bex1/Rex3 gene in preimplantation stage mouse embryos. Mol. Reprod. Dev. 61:2002;281-287
67. Yeom Y.I., Fuhrmann G., Ovitt C.E., Brehm A., Ohbo K., Gross M., Hübner K., Schöler H.R. Germline regulatory element of Oct-4 specific for the totipotent cycle of embryonal cells. Development. 122:1996;881-894
68. Yu J., Hecht N.B., Schultz R.M. Expression of MSY2 in mouse oocytes and preimplantation embryos. Biol. Reprod. 65:2001;1260-1270
69. Zatsepina O., Baly C., Chebrout M., Debey P. The step-wise assembly of a functional nucleolus in preimplantation mouse embryos involves the Cajal (coiled) body. Dev. Biol. 253:2003;66-83
70. Zeng F., Schultz R.M. Gene expression in mouse oocytes and preimplantation embryos: use of suppression subtractive hybridization to identify oocyte- and embryo-specific genes. Biol. Reprod. 68:2003;31-39