Reprogramming of the circadian clock by nutritional challenge

Cell

Volumn 155, Issue 7, 2013, Pages 1464-1478

  Eckel Mahan, Kristin L ^a   Patel, Vishal R ^a   De Mateo, Sara ^a   Orozco Solis, Ricardo ^a   Ceglia, Nicholas J ^a   Sahar, Saurabh ^a   Dilag Penilla, Sherry A ^a   Dyar, Kenneth A ^b   Baldi, Pierre ^a   Sassone Corsi, Paolo ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b VENETIAN INSTITUTE OF MOLECULAR MEDICINE   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

COENZYME A; GLUCOSE; NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE; PER2 PROTEIN; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA; PROTEIN BMAL1; TRANSCRIPTION FACTOR CLOCK; TRANSCRIPTOME; ARNTL PROTEIN, MOUSE; CLOCK PROTEIN, MOUSE; TRANSCRIPTION FACTOR ARNTL;

ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; CHROMATIN; CIRCADIAN RHYTHM; CONTROLLED STUDY; ENZYME ACTIVATION; EPIGENETICS; GLUCONEOGENESIS; LIPID DIET; MALE; METABOLISM; METABOLOME; MOUSE; NONHUMAN; NUCLEAR REPROGRAMMING; NUCLEOTIDE SEQUENCE; NUTRITION; OBESITY; OSCILLATION; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DEGRADATION; PURINE METABOLISM; SIGNAL TRANSDUCTION; ANIMAL; C57BL MOUSE; GENE EXPRESSION REGULATION;

ANIMALS; ARNTL TRANSCRIPTION FACTORS; CIRCADIAN CLOCKS; CIRCADIAN RHYTHM; CLOCK PROTEINS; DIET, HIGH-FAT; GENE EXPRESSION REGULATION; MALE; METABOLIC NETWORKS AND PATHWAYS; MICE; MICE, INBRED C57BL; OBESITY; PPAR GAMMA; TRANSCRIPTOME;

EID: 84894590704     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2013.11.034     Document Type: Article

References (75)

1. Lda.C. Antunes, M.N. Jornada, L. Ramalho, and M.P. Hidalgo Correlation of shift work and waist circumference, body mass index, chronotype and depressive symptoms Arq. Bras. Endocrinol. Metabol. 54 2010 652 656
2. D.M. Arble, J. Bass, A.D. Laposky, M.H. Vitaterna, and F.W. Turek Circadian timing of food intake contributes to weight gain Obesity (Silver Spring) 17 2009 2100 2102
3. M.S. Bray, and M.E. Young The role of cell-specific circadian clocks in metabolism and disease Obes. Rev. 10 2009 6 13
4. P. Carmona-Saez, M. Chagoyen, F. Tirado, J.M. Carazo, and A. Pascual-Montano GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists Genome Biol. 8 2007 R3
5. K. Daily, V.R. Patel, P. Rigor, X. Xie, and P. Baldi MotifMap: integrative genome-wide maps of regulatory motif sites for model species BMC Bioinformatics 12 2011 495
6. R. Dallmann, A.U. Viola, L. Tarokh, C. Cajochen, and S.A. Brown The human circadian metabolome Proc. Natl. Acad. Sci. USA 109 2012 2625 2629
7. F. Damiola, N. Le Minh, N. Preitner, B. Kornmann, F. Fleury-Olela, and U. Schibler Restricted feeding uncouples circadian oscillators in peripheral tissues from the central pacemaker in the suprachiasmatic nucleus Genes Dev. 14 2000 2950 2961
8. U.N. Das, and A.A. Rao Gene expression profile in obesity and type 2 diabetes mellitus Lipids Health Dis. 6 2007 35
9. C. Dibner, U. Schibler, and U. Albrecht The mammalian circadian timing system: organization and coordination of central and peripheral clocks Annu. Rev. Physiol. 72 2010 517 549
10. M. Doi, Y. Takahashi, R. Komatsu, F. Yamazaki, H. Yamada, S. Haraguchi, N. Emoto, Y. Okuno, G. Tsujimoto, and A. Kanematsu et al. Salt-sensitive hypertension in circadian clock-deficient Cry-null mice involves dysregulated adrenal Hsd3b6 Nat. Med. 16 2010 67 74
11. C.L. Drake, T. Roehrs, G. Richardson, J.K. Walsh, and T. Roth Shift work sleep disorder: prevalence and consequences beyond that of symptomatic day workers Sleep 27 2004 1453 1462
12. K.L. Eckel-Mahan, V.R. Patel, R.P. Mohney, K.S. Vignola, P. Baldi, and P. Sassone-Corsi Coordination of the transcriptome and metabolome by the circadian clock Proc. Natl. Acad. Sci. USA 109 2012 5541 5546
13. A.M. Evans, C.D. DeHaven, T. Barrett, M. Mitchell, and E. Milgram Integrated, nontargeted ultrahigh performance liquid chromatography/electrospray ionization tandem mass spectrometry platform for the identification and relative quantification of the small-molecule complement of biological systems Anal. Chem. 81 2009 6656 6667
14. L. Fajas, M.B. Debril, and J. Auwerx PPAR gamma: an essential role in metabolic control Nutr. Metab. Cardiovasc. Dis. 11 2001 64 69
15. D. Feng, and M.A. Lazar Clocks, metabolism, and the epigenome Mol. Cell 47 2012 158 167
16. L.K. Fonken, J.L. Workman, J.C. Walton, Z.M. Weil, J.S. Morris, A. Haim, and R.J. Nelson Light at night increases body mass by shifting the time of food intake Proc. Natl. Acad. Sci. USA 107 2010 18664 18669
17. O. Froy Metabolism and circadian rhythms - implications for obesity Endocr. Rev. 31 2010 1 24
18. J.R. Gerstner, L.C. Lyons, K.P. Wright Jr., D.H. Loh, O. Rawashdeh, K.L. Eckel-Mahan, and G.W. Roman Cycling behavior and memory formation J. Neurosci. 29 2009 12824 12830
19. C.B. Green, N. Douris, S. Kojima, C.A. Strayer, J. Fogerty, D. Lourim, S.R. Keller, and J.C. Besharse Loss of Nocturnin, a circadian deadenylase, confers resistance to hepatic steatosis and diet-induced obesity Proc. Natl. Acad. Sci. USA 104 2007 9888 9893
20. M.H. Hastings, E.S. Maywood, and A.B. Reddy Two decades of circadian time J. Neuroendocrinol. 20 2008 812 819
21. F. Hatanaka, C. Matsubara, J. Myung, T. Yoritaka, N. Kamimura, S. Tsutsumi, A. Kanai, Y. Suzuki, P. Sassone-Corsi, and H. Aburatani et al. Genome-wide profiling of the core clock protein BMAL1 targets reveals a strict relationship with metabolism Mol. Cell. Biol. 30 2010 5636 5648
22. M. Hatori, C. Vollmers, A. Zarrinpar, L. DiTacchio, E.A. Bushong, S. Gill, M. Leblanc, A. Chaix, M. Joens, and J.A. Fitzpatrick et al. Time-restricted feeding without reducing caloric intake prevents metabolic diseases in mice fed a high-fat diet Cell Metab. 15 2012 848 860
23. M.E. Hughes, L. DiTacchio, K.R. Hayes, C. Vollmers, S. Pulivarthy, J.E. Baggs, S. Panda, and J.B. Hogenesch Harmonics of circadian gene transcription in mammals PLoS Genet. 5 2009 e1000442
24. M.E. Hughes, J.B. Hogenesch, and K. Kornacker JTK-CYCLE: an efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets J. Biol. Rhythms 25 2010 372 380
25. M. Inoue, T. Ohtake, W. Motomura, N. Takahashi, Y. Hosoki, S. Miyoshi, Y. Suzuki, H. Saito, Y. Kohgo, and T. Okumura Increased expression of PPARgamma in high fat diet-induced liver steatosis in mice Biochem. Biophys. Res. Commun. 336 2005 215 222
26. N. Itoh, S. Sakaue, H. Nakagawa, M. Kurogochi, H. Ohira, K. Deguchi, S. Nishimura, and M. Nishimura Analysis of N-glycan in serum glycoproteins from db/db mice and humans with type 2 diabetes Am. J. Physiol. Endocrinol. Metab. 293 2007 E1069 E1077
27. S. Jitrapakdee, A. Vidal-Puig, and J.C. Wallace Anaplerotic roles of pyruvate carboxylase in mammalian tissues Cell. Mol. Life Sci. 63 2006 843 854
28. T. Kasukawa, M. Sugimoto, A. Hida, Y. Minami, M. Mori, S. Honma, K. Honma, K. Mishima, T. Soga, and H.R. Ueda Human blood metabolite timetable indicates internal body time Proc. Natl. Acad. Sci. USA 109 2012 15036 15041
29. S. Katada, and P. Sassone-Corsi The histone methyltransferase MLL1 permits the oscillation of circadian gene expression Nat. Struct. Mol. Biol. 17 2010 1414 1421
30. M. Kawai, C.B. Green, B. Lecka-Czernik, N. Douris, M.R. Gilbert, S. Kojima, C. Ackert-Bicknell, N. Garg, M.C. Horowitz, and M.L. Adamo et al. A circadian-regulated gene, Nocturnin, promotes adipogenesis by stimulating PPAR-gamma nuclear translocation Proc. Natl. Acad. Sci. USA 107 2010 10508 10513
31. A. Knutsson Health disorders of shift workers Occup. Med. (Lond.) 53 2003 103 108
32. C.H. Ko, and J.S. Takahashi Molecular components of the mammalian circadian clock Hum. Mol. Genet. 15 Spec No 2 2006 R271 R277
33. A. Kohsaka, A.D. Laposky, K.M. Ramsey, C. Estrada, C. Joshu, Y. Kobayashi, F.W. Turek, and J. Bass High-fat diet disrupts behavioral and molecular circadian rhythms in mice Cell Metab. 6 2007 414 421
34. N. Koike, S.H. Yoo, H.C. Huang, V. Kumar, C. Lee, T.K. Kim, and J.S. Takahashi Transcriptional architecture and chromatin landscape of the core circadian clock in mammals Science 338 2012 349 354
35. R.V. Kondratov, M.V. Chernov, A.A. Kondratova, V.Y. Gorbacheva, A.V. Gudkov, and M.P. Antoch BMAL1-dependent circadian oscillation of nuclear CLOCK: posttranslational events induced by dimerization of transcriptional activators of the mammalian clock system Genes Dev. 17 2003 1921 1932
36. R.V. Kondratov, A.A. Kondratova, V.Y. Gorbacheva, O.V. Vykhovanets, and M.P. Antoch Early aging and age-related pathologies in mice deficient in BMAL1, the core componentof the circadian clock Genes Dev. 20 2006 1868 1873
37. N. Kumashiro, S.A. Beddow, D.F. Vatner, S.K. Majumdar, J.L. Cantley, F. Guebre-Egziabher, I. Fat, B. Guigni, M.J. Jurczak, A.L. Birkenfeld, and M. Kahn et al. Targeting pyruvate carboxylase reduces gluconeogenesis and adiposity and improves insulin resistance Diabetes 62 2013 2183 2194
38. K.A. Lamia, K.F. Storch, and C.J. Weitz Physiological significance of a peripheral tissue circadian clock Proc. Natl. Acad. Sci. USA 105 2008 15172 15177
39. J. Lee, M.S. Kim, R. Li, V.Y. Liu, L. Fu, D.D. Moore, K. Ma, and V.K. Yechoor Loss of Bmal1 leads to uncoupling and impaired glucose-stimulated insulin secretion in beta-cells Islets 3 2011 381 388
40. L.M. Leesnitzer, D.J. Parks, R.K. Bledsoe, J.E. Cobb, J.L. Collins, T.G. Consler, R.G. Davis, E.A. Hull-Ryde, J.M. Lenhard, and L. Patel et al. Functional consequences of cysteine modification in the ligand binding sites of peroxisome proliferator activated receptors by GW9662 Biochemistry 41 2002 6640 6650
41. B. Marcheva, K.M. Ramsey, E.D. Buhr, Y. Kobayashi, H. Su, C.H. Ko, G. Ivanova, C. Omura, S. Mo, and M.H. Vitaterna et al. Disruption of the clock components CLOCK and BMAL1 leads to hypoinsulinaemia and diabetes Nature 466 2010 627 631
42. S. Masri, V.R. Patel, K.L. Eckel-Mahan, S. Peleg, I. Forne, A.G. Ladurner, P. Baldi, A. Imhof, and P. Sassone-Corsi Circadian acetylome reveals regulation of mitochondrial metabolic pathways Proc. Natl. Acad. Sci. USA 110 2013 3339 3344
43. K. Matsusue, T. Kusakabe, T. Noguchi, S. Takiguchi, T. Suzuki, S. Yamano, and F.J. Gonzalez Hepatic steatosis in leptin-deficient mice is promoted by the PPARgamma target gene Fsp27 Cell Metab. 7 2008 302 311
44. J.S. Menet, and M. Rosbash When brain clocks lose track of time: cause or consequence of neuropsychiatric disorders Curr. Opin. Neurobiol. 21 2011 849 857
45. J. Morf, G. Rey, K. Schneider, M. Stratmann, J. Fujita, F. Naef, and U. Schibler Cold-inducible RNA-binding protein modulates circadian gene expression posttranscriptionally Science 338 2012 379 383
46. Y. Nakahata, S. Sahar, G. Astarita, M. Kaluzova, and P. Sassone-Corsi Circadian control of the NAD+ salvage pathway by CLOCK-SIRT1 Science 324 2009 654 657
47. R. Nogales-Cadenas, P. Carmona-Saez, M. Vazquez, C. Vicente, X. Yang, F. Tirado, J.M. Carazo, and A. Pascual-Montano GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information Nucleic Acids Res. 37 2009 W317 W322
48. J.S. O'Neill, E.S. Maywood, J.E. Chesham, J.S. Takahashi, and M.H. Hastings cAMP-dependent signaling as a core component of the mammalian circadian pacemaker Science 320 2008 949 953
49. J.S. O'Neill, G. van Ooijen, L.E. Dixon, C. Troein, F. Corellou, F.Y. Bouget, A.B. Reddy, and A.J. Millar Circadian rhythms persist without transcription in a eukaryote Nature 469 2011 554 558
50. V.R. Patel, K. Eckel-Mahan, P. Sassone-Corsi, and P. Baldi CircadiOmics: integrating circadian genomics, transcriptomics, proteomics and metabolomics Nat. Methods 9 2012 772 773
51. J.S. Pendergast, K.L. Branecky, W. Yang, K.L. Ellacott, K.D. Niswender, and S. Yamazaki High-fat diet acutely affects circadian organisation and eating behavior Eur. J. Neurosci. 37 2013 1350 1356
52. M. Perreault, S. Will, D. Panza, T. Gareski, K. Harding, D. Kubasiak, M. Jalenak, K. Gartrell, S. Wang, and G. Bollag et al. Modulation of nutrient sensing nuclear hormone receptors promotes weight loss through appetite suppression in mice Diabetes Obes. Metab. 12 2010 234 245
53. K.M. Ramsey, J. Yoshino, C.S. Brace, D. Abrassart, Y. Kobayashi, B. Marcheva, H.K. Hong, J.L. Chong, E.D. Buhr, and C. Lee et al. Circadian clock feedback cycle through NAMPT-mediated NAD+ biosynthesis Science 324 2009 651 654
54. G. Rey, F. Cesbron, J. Rougemont, H. Reinke, M. Brunner, and F. Naef Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver PLoS Biol. 9 2011 e1000595
55. J.A. Ripperger, and U. Schibler Rhythmic CLOCK-BMAL1 binding to multiple E-box motifs drives circadian Dbp transcription and chromatin transitions Nat. Genet. 38 2006 369 374
56. J.T. Rodgers, C. Lerin, W. Haas, S.P. Gygi, B.M. Spiegelman, and P. Puigserver Nutrient control of glucose homeostasis through a complex of PGC-1alpha and SIRT1 Nature 434 2005 113 118
57. R.D. Rudic, P. McNamara, A.M. Curtis, R.C. Boston, S. Panda, J.B. Hogenesch, and G.A. Fitzgerald BMAL1 and CLOCK, two essential components of the circadian clock, are involved in glucose homeostasis PLoS Biol. 2 2004 e377
58. L.A. Sadacca, K.A. Lamia, A.S. deLemos, B. Blum, and C.J. Weitz An intrinsic circadian clock of the pancreas is required for normal insulin release and glucose homeostasis in mice Diabetologia 54 2011 120 124
59. S. Sahar, and P. Sassone-Corsi Regulation of metabolism: the circadian clock dictates the time Trends Endocrinol. Metab. 23 2012 1 8
60. U. Schibler, and P. Sassone-Corsi A web of circadian pacemakers Cell 111 2002 919 922
61. A. Sharifian, S. Farahani, P. Pasalar, M. Gharavi, and O. Aminian Shift work as an oxidative stressor J. Circadian Rhythms 3 2005 15
62. S.Q. Shi, T.S. Ansari, O.P. McGuinness, D.H. Wasserman, and C.H. Johnson Circadian disruption leads to insulin resistance and obesity Curr. Biol. 23 2013 372 381
63. B.C. Sos, C. Harris, S.M. Nordstrom, J.L. Tran, M. Balázs, P. Caplazi, M. Febbraio, M.A. Applegate, K.U. Wagner, and E.J. Weiss Abrogation of growth hormone secretion rescues fatty liver in mice with hepatocyte-specific deletion of JAK2 J. Clin. Invest. 121 2011 1412 1423
64. B.M. Spiegelman PPAR-gamma: adipogenic regulator and thiazolidinedione receptor Diabetes 47 1998 507 514
65. K.A. Stokkan, S. Yamazaki, H. Tei, Y. Sakaki, and M. Menaker Entrainment of the circadian clock in the liver by feeding Science 291 2001 490 493
66. Y. Suwazono, M. Dochi, K. Sakata, Y. Okubo, M. Oishi, K. Tanaka, E. Kobayashi, T. Kido, and K. Nogawa A longitudinal study on the effect of shift work on weight gain in male Japanese workers Obesity (Silver Spring) 16 2008 1887 1893
67. P. Tontonoz, and B.M. Spiegelman Fat and beyond: the diverse biology of PPARgamma Annu. Rev. Biochem. 77 2008 289 312
68. F.W. Turek, C. Joshu, A. Kohsaka, E. Lin, G. Ivanova, E. McDearmon, A. Laposky, S. Losee-Olson, A. Easton, and D.R. Jensen et al. Obesity and metabolic syndrome in circadian Clock mutant mice Science 308 2005 1043 1045
69. A. Vidal-Puig, M. Jimenez-Liñan, B.B. Lowell, A. Hamann, E. Hu, B. Spiegelman, J.S. Flier, and D.E. Moller Regulation of PPAR gamma gene expression by nutrition and obesity in rodents J. Clin. Invest. 97 1996 2553 2561
70. C. Vollmers, S. Gill, L. DiTacchio, S.R. Pulivarthy, H.D. Le, and S. Panda Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression Proc. Natl. Acad. Sci. USA 106 2009 21453 21458
71. D.B. West, C.N. Boozer, D.L. Moody, and R.L. Atkinson Dietary obesity in nine inbred mouse strains Am. J. Physiol. 262 1992 R1025 R1032
72. X. Xie, P. Rigor, and P. Baldi MotifMap: a human genome-wide map of candidate regulatory motif sites Bioinformatics 25 2009 167 174
73. S.H. Yoo, J.A. Mohawk, S.M. Siepka, Y. Shan, S.K. Huh, H.K. Hong, I. Kornblum, V. Kumar, N. Koike, and M. Xu et al. Competing E3 ubiquitin ligases govern circadian periodicity by degradation of CRY in nucleus and cytoplasm Cell 152 2013 1091 1105
74. J. Yoshino, K.F. Mills, M.J. Yoon, and S. Imai Nicotinamide mononucleotide, a key NAD(+) intermediate, treats the pathophysiology of diet- and age-induced diabetes in mice Cell Metab. 14 2011 528 536
75. E.E. Zhang, Y. Liu, R. Dentin, P.Y. Pongsawakul, A.C. Liu, T. Hirota, D.A. Nusinow, X. Sun, S. Landais, and Y. Kodama et al. Cryptochrome mediates circadian regulation of cAMP signaling and hepatic gluconeogenesis Nat. Med. 16 2010 1152 1156