Spectroscopic and computational study of a nonheme iron nitrosyl center in a biosynthetic model of nitric oxide reductase

Angewandte Chemie - International Edition

Volumn 53, Issue 9, 2014, Pages 2417-2421

  Chakraborty, Saumen ^a   Reed, Julian ^a   Ross, Matthew ^a   Nilges, Mark J ^a   Petrik, Igor D ^a   Ghosh, Soumya ^a   Hammes Schiffer, Sharon ^a   Sage, J Timothy ^b   Zhang, Yong ^c   Schulz, Charles E ^d   Lu, Yi ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b NORTHEASTERN UNIVERSITY   (United States)

^c Stevens Institute of Technology   (United States)

^d KNOX COLLEGE   (United States)

Author keywords

computational chemistry; EPR spectroscopy; heme proteins; iron; reaction mechanisms

Indexed keywords

DINITROSYL IRON COMPLEX; FISH PROTEIN; IRON; NITRIC OXIDE; NITRIC OXIDE REDUCTASE; NITRIC-OXIDE REDUCTASE; NITROGEN OXIDE; OXIDOREDUCTASE;

ANIMAL; ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTATIONAL CHEMISTRY; ELECTRON SPIN RESONANCE; HEME PROTEINS; METABOLISM; REACTION MECHANISMS; SPERM WHALE;

COMPUTATIONAL CHEMISTRY; EPR SPECTROSCOPY; HEME PROTEINS; IRON; REACTION MECHANISMS;

ANIMALS; BINDING SITES; ELECTRON SPIN RESONANCE SPECTROSCOPY; FISH PROTEINS; IRON; MODELS, MOLECULAR; NITRIC OXIDE; NITROGEN OXIDES; OXIDOREDUCTASES; SPERM WHALE;

EID: 84894420721     PISSN: 14337851     EISSN: 15213773     Source Type: Journal    
DOI: 10.1002/anie.201308431     Document Type: Article

References (57)

1. Y. Shiro, H. Sugimoto, T. Tosha, S. Nagano, T. Hino, Philos. Trans. R. Soc. London Ser. B 2012, 367, 1195-1203
2. M. P. Schopfer, J. Wang, K. D. Karlin, Inorg. Chem. 2010, 49, 6267-6282
3. I. M. Wasser, S. de Vries, P. Moënne-Loccoz, I. Schröder, K. D. Karlin, Chem. Rev. 2002, 102, 1201-1234.
4. J. R. Laver, T. M. Stevanin, S. L. Messenger, A. D. Lunn, M. E. Lee, J. W. Moir, R. K. Poole, R. C. Read, FASEB J. 2010, 24, 286-295
5. T. M. Stevanin, J. W. Moir, R. C. Read, Infect. Immun. 2005, 73, 3322-3329.
6. P. Möenne-Loccoz, Nat. Prod. Rep. 2007, 24, 610-620
7. N. Xu, A. L. O. Campbell, D. R. Powell, J. Khandogin, G. B. Richter-Addo, J. Am. Chem. Soc. 2009, 131, 2460-2461.
8. L. E. Goodrich, F. Paulat, V. K. K. Praneeth, N. Lehnert, Inorg. Chem. 2010, 49, 6293-6316.
9. L. Cheng, G. B. Richter-Addo, The Porphyrin Handbook Kadish, Vol. 4 (Eds.:, K. M. Kadish, K. M. Smith, R. Guilard,), Academic Press, New York, 2000, Chap. 33, pp. 219-291
10. C. M. Coyle, K. M. Vogel, T. S. Rush, P. M. Kozlowski, R. Williams, T. G. Spiro, Y. Dou, M. Ikeda-Saito, J. S. Olson, M. Z. Zgierski, Biochemistry 2003, 42, 4896-4903
11. N. Lehnert, T. C. Berto, M. G. I. Galinato, L. E. Goodrich, in The Handbook of Porphyrin Science, Vol. 14, Chapter 63 (Eds.:, K. M. Kadish, K. M. Smith, R. Guilard,), World Scientific, Singapore, 2011, pp. 1-247
12. N. J. Silvernail, A. Barabanschikov, J. T. Sage, B. C. Noll, W. R. Scheidt, J. Am. Chem. Soc. 2009, 131, 2131-2140
13. G. R. Wyllie, W. R. Scheidt, Chem. Rev. 2002, 102, 1067-1090
14. V. Praneeth, F. Neese, N. Lehnert, Inorg. Chem. 2005, 44, 2570-2572
15. M. Radoul, M. Sundararajan, A. Potapov, C. Riplinger, F. Neese, D. Goldfarb, Phys. Chem. Chem. Phys. 2010, 12, 7276-7289.
16. J. P. Collman, Y. Yang, A. Dey, R. A. Decréau, S. Ghosh, T. Ohta, E. I. Solomon, Proc. Natl. Acad. Sci. USA 2008, 105, 15660-15665
17. T. C. Berto, M. B. Hoffman, Y. Murata, K. B. Landenberger, E. E. Alp, J. Zhao, N. Lehnert, J. Am. Chem. Soc. 2011, 133, 16714-16717
18. I. M. Wasser, H. Huang, P. Möenne-Loccoz, K. D. Karlin, J. Am. Chem. Soc. 2005, 127, 3310-3320
19. J. P. Collman, A. Dey, Y. Yang, R. A. Decréau, T. Ohta, E. I. Solomon, J. Am. Chem. Soc. 2008, 130, 16498-16499.
20. N. Yeung, Y.-W. Lin, Y.-G. Gao, X. Zhao, B. S. Russell, L. Lei, K. D. Miner, H. Robinson, Y. Lu, Nature 2009, 462, 1079-1082
21. Y. Lu, N. Yeung, N. Sieracki, N. M. Marshall, Nature 2009, 460, 855-862
22. Y.-W. Lin, N. Yeung, Y.-G. Gao, K. D. Miner, S. Tian, H. Robinson, Y. Lu, Proc. Natl. Acad. Sci. USA 2010, 107, 8581-8586
23. Y.-W. Lin, N. Yeung, Y.-G. Gao, K. D. Miner, L. Lei, H. Robinson, Y. Lu, J. Am. Chem. Soc. 2010, 132, 9970-9972
24. Y. Lu, S. Chakraborty, K. D. Miner, T. D. Wilson, A. Mukherjee, Y. Yu, J. Liu, N. M. Marshall, Comprehensive Inorganic Chemistry II (Eds.:, J. Reedijk, K. Poeppelmeier,), Elsevier, Amsterdam, 2013, pp. 565-593
25. T. Hayashi, K. D. Miner, N. Yeung, Y.-W. Lin, Y. Lu, P. Möenne-Loccoz, Biochemistry 2011, 50, 5939-5947.
26. T. Hino, Y. Matsumoto, S. Nagano, H. Sugimoto, Y. Fukumori, T. Murata, S. Iwata, Y. Shiro, Science 2010, 330, 1666-1670.
27. W. L. DeLano, The PyMOL Molecular Graphics System, DeLano Scientific, Palo Alto, California, USA 2005, http://www.pymol.org.
28. F. W. J. Teale, Biochim. Biophys. Acta 1959, 35, 543
29. T. Koshiyama, M. Shirai, T. Hikage, H. Tabe, K. Tanaka, S. Kitagawa, T. Ueno, Angew. Chem. 2011, 123, 4951-4954
30. Angew. Chem. Int. Ed. 2011, 50, 4849-4852
31. Z.-X. Liang, J. M. Nocek, K. Huang, R. T. Hayes, I. V. Kurnikov, D. N. Beratan, B. M. Hoffman, J. Am. Chem. Soc. 2002, 124, 6849-6859
32. N. Wang, X. Zhao, Y. Lu, J. Am. Chem. Soc. 2005, 127, 16541-16547.
33. J. A. Sigman, B. C. Kwok, A. Gengenbach, Y. Lu, J. Am. Chem. Soc. 1999, 121, 8949-8950
34. J. A. Sigman, B. C. Kwok, Y. Lu, J. Am. Chem. Soc. 2000, 122, 8192-8196.
35. P. D. Adams, P. V. Afonine, G. Bunkoczi, V. B. Chen, I. W. Davis, N. Echols, J. J. Headd, L.-W. Hung, G. J. Kapral, R. W. Grosse-Kunstleve, A. J. McCoy, N. W. Moriarty, R. Oeffner, R. J. Read, D. C. Richardson, J. S. Richardson, T. C. Terwilliger, P. H. Zwart, Acta Crystallogr. Sect. D 2010, 66, 213-221.
36. J. Enemark, R. Feltham, Coord. Chem. Rev. 1974, 13, 339-406.
37. P. Schmidt, R. Kappl, J. Hüttermann, Appl. Magn. Reson. 2001, 21, 423-440.
38. H. Kumita, K. Matsuura, T. Hino, S. Takahashi, H. Hori, Y. Fukumori, I. Morishima, Y. Shiro, J. Biol. Chem. 2004, 279, 55247-55254.
39. D. M. Arciero, J. D. Lipscornb, B. H. Huynh, T. A. Kent, E. Münck, J. Biol. Chem. 1983, 258, 14981-14991
40. B. DAutréaux, N. P. Tucker, R. Dixon, S. Spiro, Nature 2005, 437, 769-772
41. B. S. Pierce, J. D. Gardner, L. J. Bailey, T. C. Brunold, B. G. Fox, Biochemistry 2007, 46, 8569-8578
42. A. M. Orville, V. J. Chen, A. Kriauciunas, M. R. Harpel, B. G. Fox, E. Münck, J. D. Lipscomb, Biochemistry 1992, 31, 4602-4612
43. J. H. Rodriguez, Y.-M. Xia, P. G. Debrunner, J. Am. Chem. Soc. 1999, 121, 7846-7863
44. Y. Zhang, M. A. Pavlosky, C. A. Brown, T. E. Westre, B. Hedman, K. O. Hodgson, E. I. Solomon, J. Am. Chem. Soc. 1992, 114, 9191-9192
45. J. M. Nocek, D. M. Kurtz, Jr., J. T. Sage, Y. M. Xia, P. Debrunner, A. K. Shiemke, J. Sanders-Loehr, T. M. Loehr, Biochemistry 1988, 27, 1014-1024.
46. F. Wells, S. McCann, H. Wickman, S. Kessel, D. Hendrickson, R. Feltham, Inorg. Chem. 1982, 21, 2306-2311
47. C. A. Brown, M. A. Pavlosky, T. E. Westre, Y. Zhang, B. Hedman, K. O. Hodgson, E. I. Solomon, J. Am. Chem. Soc. 1995, 117, 715-732
48. M. Li, D. Bonnet, E. Bill, F. Neese, T. Weyhermüller, N. Blum, D. Sellmann, K. Wieghardt, Inorg. Chem. 2002, 41, 3444-3456
49. C. Hauser, T. Glaser, E. Bill, T. Weyhermüller, K. Wieghardt, J. Am. Chem. Soc. 2000, 122, 4352-4365
50. T. C. Berto, A. L. Speelman, S. Zheng, N. Lehnert, Coord. Chem. Rev. 2013, 257, 244-259.
51. P. G. Debrunner, in Spectroscopic Approaches to Biomolecular Conformation (Ed.:, D. W. Urry,), American Medical Association, Chicago, 1970, pp. 209-262
52. N. N. Greenwood, T. C. Gibb, Mossbauer Spectroscopy, Chapman and Hall, London, 1971.
53. E. Bill, F.-H. Bernhardt, A. X. Trautwein, H. Winkler, Eur. J. Biochem. 1985, 147, 177-182
54. C. J. Haskin, N. Ravi, J. B. Lynch, E. Münck, L. Que, Jr., Biochemistry 1995, 34, 11090-11098
55. Y. Zhang, E. Oldfield, J. Am. Chem. Soc. 2004, 126, 9494-9495.
56. Y. Zhang, E. Oldfield, J. Phys. Chem. A 2003, 107, 4147-4150.
57. H. Matsumura, T. Hayashi, S. Chakraborty, Y. Lu, P. Möenne-Loccoz, J. Am. Chem. Soc. 2014, DOI: