-
1
-
-
0035252648
-
How enzymes adapt: Lessons from directed evolution
-
1:CAS:528:DC%2BD3MXptV2gsQ%3D%3D 11166567 10.1016/S0968-0004(00)01755-2
-
Arnold FH, Wintrode PL, Miyazaki K, Gershenson A (2001) How enzymes adapt: lessons from directed evolution. Trends Biochem Sci 26:100-106
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 100-106
-
-
Arnold, F.H.1
Wintrode, P.L.2
Miyazaki, K.3
Gershenson, A.4
-
3
-
-
58149200943
-
The Carbohydrate-Active EnZymes database (CAZy): An expert resource for Glycogenomics
-
2686590 18838391 10.1093/nar/gkn663
-
Cantarel B, Coutinho P, Rancurel C, Bernard T, Lombard V, Henrissat B (2008) The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res 37:D233-D238
-
(2008)
Nucleic Acids Res
, vol.37
-
-
Cantarel, B.1
Coutinho, P.2
Rancurel, C.3
Bernard, T.4
Lombard, V.5
Henrissat, B.6
-
4
-
-
0032518266
-
DNA shuffling of a family of genes from diverse species accelerates directed evolution
-
1:CAS:528:DyaK1cXnsV2msA%3D%3D 9440693 10.1038/34663
-
Crameri A, Raillard S-A, Bermudez E, Stemmer WPC (1998) DNA shuffling of a family of genes from diverse species accelerates directed evolution. Nature 391:288-291
-
(1998)
Nature
, vol.391
, pp. 288-291
-
-
Crameri, A.1
Raillard, S.-A.2
Bermudez, E.3
Stemmer, W.P.C.4
-
7
-
-
77950630377
-
Engineering lower inhibitor affinities in β-xylosidase
-
1:CAS:528:DC%2BC3cXjvVehs74%3D 19921178 10.1007/s00253-009-2335-7
-
Fan Z, Yuan L, Jordan DB, Wagschal K, Heng C, Braker JD (2010) Engineering lower inhibitor affinities in β-xylosidase. Appl Microbiol Biotechnol 86:1099-1113
-
(2010)
Appl Microbiol Biotechnol
, vol.86
, pp. 1099-1113
-
-
Fan, Z.1
Yuan, L.2
Jordan, D.B.3
Wagschal, K.4
Heng, C.5
Braker, J.D.6
-
8
-
-
79951801646
-
Hemicellulases and auxiliary enzymes for improved conversion of lignocellulosic biomass to monosaccharides
-
1:CAS:528:DC%2BC3MXjt1Kiu7c%3D 3056733 21342516 10.1186/1754-6834-4-5
-
Gao D, Uppugundla N, Chundawat SP, Yu X, Hermanson S, Gowda K, Brumm P, Mead D, Balan V, Dale BE (2011) Hemicellulases and auxiliary enzymes for improved conversion of lignocellulosic biomass to monosaccharides. Biotechnol Biofuels 4:5
-
(2011)
Biotechnol Biofuels
, vol.4
, pp. 5
-
-
Gao, D.1
Uppugundla, N.2
Chundawat, S.P.3
Yu, X.4
Hermanson, S.5
Gowda, K.6
Brumm, P.7
Mead, D.8
Balan, V.9
Dale, B.E.10
-
9
-
-
77953219138
-
The biochemistry and structural biology of plant cell wall deconstruction
-
1:CAS:528:DC%2BC3cXnvVamsb4%3D 2879781 20406913 10.1104/pp.110.156646
-
Gilbert HJ (2010) The biochemistry and structural biology of plant cell wall deconstruction. Plant Physiol 153:444-455
-
(2010)
Plant Physiol
, vol.153
, pp. 444-455
-
-
Gilbert, H.J.1
-
10
-
-
0032573217
-
Directed evolution of a thermostable esterase
-
1:CAS:528:DyaK1cXntFWksbc%3D 9788996 10.1073/pnas.95.22.12809
-
Giver L, Gershenson A, Freskgard P-O, Arnold FH (1998) Directed evolution of a thermostable esterase. Proc Natl Acad Sci 95:12809-12813
-
(1998)
Proc Natl Acad Sci
, vol.95
, pp. 12809-12813
-
-
Giver, L.1
Gershenson, A.2
Freskgard, P.-O.3
Arnold, F.H.4
-
11
-
-
10744233518
-
Increased rigidity of domain structures enhances the stability of a mutant enzyme created by directed evolution
-
1:CAS:528:DC%2BD3sXptVKnu74%3D 14661958 10.1021/bi034776z
-
Hoseki J, Okamoto A, Takada N, Suenaga A, Futatsugi N, Konagaya A, Taiji M, Yano T, Kuramitsu S, Kagamiyama H (2003) Increased rigidity of domain structures enhances the stability of a mutant enzyme created by directed evolution. Biochemistry 42(49):14469-14475
-
(2003)
Biochemistry
, vol.42
, Issue.49
, pp. 14469-14475
-
-
Hoseki, J.1
Okamoto, A.2
Takada, N.3
Suenaga, A.4
Futatsugi, N.5
Konagaya, A.6
Taiji, M.7
Yano, T.8
Kuramitsu, S.9
Kagamiyama, H.10
-
12
-
-
78649277331
-
Thermostabilization of an esterase by alignment-guided focused directed evolution
-
1:CAS:528:DC%2BC3cXhsVejsb7F 20947674 10.1093/protein/gzq071
-
Jochens H, Aerts D, Bornscheuer UT (2010) Thermostabilization of an esterase by alignment-guided focused directed evolution. Protein Eng Des Sel 23(12):903-909
-
(2010)
Protein Eng des Sel
, vol.23
, Issue.12
, pp. 903-909
-
-
Jochens, H.1
Aerts, D.2
Bornscheuer, U.T.3
-
13
-
-
34547512927
-
Structure-function relationships of a catalytically efficient β-d-xylosidase
-
1:CAS:528:DC%2BD2sXlsFCns7g%3D 17625266 10.1007/s12010-007-9210-8
-
Jordan DB, Li X-L, Dunlap CA, Whitehead TR, Cotta MA (2007) Structure-function relationships of a catalytically efficient β-d-xylosidase. Appl Biochem Biotechnol 141:51-76
-
(2007)
Appl Biochem Biotechnol
, vol.141
, pp. 51-76
-
-
Jordan, D.B.1
Li, X.-L.2
Dunlap, C.A.3
Whitehead, T.R.4
Cotta, M.A.5
-
14
-
-
77952881793
-
Properties and applications of microbial β-D-xylosidases featuring the catalytically efficient enzyme from Selenomonas ruminantium
-
1:CAS:528:DC%2BC3cXltVyls7c%3D 20352422 10.1007/s00253-010-2538-y
-
Jordan DB, Wagschal K (2010) Properties and applications of microbial β-D-xylosidases featuring the catalytically efficient enzyme from Selenomonas ruminantium. Appl Microbiol Biotechnol 86:1647-1658
-
(2010)
Appl Microbiol Biotechnol
, vol.86
, pp. 1647-1658
-
-
Jordan, D.B.1
Wagschal, K.2
-
15
-
-
80855143728
-
Engineering lower inhibitor affinities in β-D-xylosidase of Selenomonas ruminantium by site-directed mutagenesis of Trp145
-
1:CAS:528:DC%2BC3MXhtlGhtrjF 21528413 10.1007/s10295-011-0971-2
-
Jordan DB, Wagschal K, Fan Z, Yuan L, Braker JD, Heng C (2011) Engineering lower inhibitor affinities in β-D-xylosidase of Selenomonas ruminantium by site-directed mutagenesis of Trp145. J Ind Microbiol Biotechnol 38:1821-1835
-
(2011)
J Ind Microbiol Biotechnol
, vol.38
, pp. 1821-1835
-
-
Jordan, D.B.1
Wagschal, K.2
Fan, Z.3
Yuan, L.4
Braker, J.D.5
Heng, C.6
-
16
-
-
84877736470
-
Highly active β-xylosidases of glycoside hydrolase family 43 operating on natural and artificial substrates
-
doi: 10.1007/s00253-00012-04475-00254
-
Jordan DB, Wagschal K, Grigorescu AA, Braker JD (2012) Highly active β-xylosidases of glycoside hydrolase family 43 operating on natural and artificial substrates. Appl Microbiol Biotechnol. 97: 4415-4428. doi: 10.1007/s00253-00012-04475-00254
-
(2012)
Appl Microbiol Biotechnol
, vol.97
, pp. 4415-4428
-
-
Jordan, D.B.1
Wagschal, K.2
Grigorescu, A.A.3
Braker, J.D.4
-
17
-
-
0022538679
-
Cumulative effect of intragenic amino-acid replacements on the thermostability of a protein
-
1:CAS:528:DyaL28Xmt1Whs7w%3D 3020429 10.1038/323356a0
-
Matsumura M, Yasumura S, Aiba S (1986) Cumulative effect of intragenic amino-acid replacements on the thermostability of a protein. Nature 323:356-358
-
(1986)
Nature
, vol.323
, pp. 356-358
-
-
Matsumura, M.1
Yasumura, S.2
Aiba, S.3
-
18
-
-
0023430560
-
Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding
-
1:CAS:528:DyaL1cXntFKnsw%3D%3D 3477797 10.1073/pnas.84.19.6663
-
Matthews BW, Nicholson H, Becktel WJ (1987) Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding. Proc Natl Acad Sci 84:6663-6667
-
(1987)
Proc Natl Acad Sci
, vol.84
, pp. 6663-6667
-
-
Matthews, B.W.1
Nicholson, H.2
Becktel, W.J.3
-
19
-
-
84860122751
-
Introducing endo-xylanase activity into an exo-acting arabinofuranosidase that targets side chains
-
1:CAS:528:DC%2BC38XmslyjtLc%3D 22492980 10.1073/pnas.1117686109
-
McKee LS, Peñab MJ, Rogowskia A, Jackson A, Lewis RJ, York WS, Krogh KBRM, Viksø-Nielsen A, Skjøt M, Gilbert HJ, Marles-Wright J (2012) Introducing endo-xylanase activity into an exo-acting arabinofuranosidase that targets side chains. Proc Natl Acad Sci 109:6537-6542
-
(2012)
Proc Natl Acad Sci
, vol.109
, pp. 6537-6542
-
-
McKee, L.S.1
Peñab, M.J.2
Rogowskia, A.3
Jackson, A.4
Lewis, R.J.5
York, W.S.6
Krogh, K.7
Viksø-Nielsen, A.8
Skjøt, M.9
Gilbert, H.J.10
Marles-Wright, J.11
-
20
-
-
77956931949
-
Site-directed mutagenesis and saturation mutagenesis for the functional study of transcription factors involved in plant secondary metabolite biosynthesis
-
1:CAS:528:DC%2BC3cXos1Cqs7g%3D 20552443 10.1007/978-1-60761-723-5-4
-
Pattanaik S, Werkman J, Kong Q, Yuan L (2010) Site-directed mutagenesis and saturation mutagenesis for the functional study of transcription factors involved in plant secondary metabolite biosynthesis. Methods Mol Biol 643:47-57
-
(2010)
Methods Mol Biol
, vol.643
, pp. 47-57
-
-
Pattanaik, S.1
Werkman, J.2
Kong, Q.3
Yuan, L.4
-
21
-
-
34248567845
-
Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes
-
1:CAS:528:DC%2BD2sXhtFGnur%2FP 17446890 10.1038/nprot.2007.72
-
Reetz MT, Carballeira JD (2007) Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes. Nat Protoc 2(4):891-903
-
(2007)
Nat Protoc
, vol.2
, Issue.4
, pp. 891-903
-
-
Reetz, M.T.1
Carballeira, J.D.2
-
22
-
-
33845288649
-
Iterative saturation mutagenesis on the basis of B factors as a strategy for increasing protein thermostability
-
1:CAS:528:DC%2BD28Xht12rs7zM 10.1002/anie.200602795
-
Reetz MT, Carballeira JD, Vogel A (2006) Iterative saturation mutagenesis on the basis of B factors as a strategy for increasing protein thermostability. Angew Chem Int Ed 45:7745-7751
-
(2006)
Angew Chem Int Ed
, vol.45
, pp. 7745-7751
-
-
Reetz, M.T.1
Carballeira, J.D.2
Vogel, A.3
-
23
-
-
0022994226
-
Mutant forms of Staphylococcal nuclease with altered patterns of guanidine hydrochloride and urea denaturation
-
1:CAS:528:DyaL2sXhsFKk 3449854 10.1002/prot.340010113
-
Shortle D, Meeker AK (1986) Mutant forms of Staphylococcal nuclease with altered patterns of guanidine hydrochloride and urea denaturation. Proteins 1:81-89
-
(1986)
Proteins
, vol.1
, pp. 81-89
-
-
Shortle, D.1
Meeker, A.K.2
-
24
-
-
0028110130
-
DNA shuffling by random fragmentation and reassembly: In vitro recombination for molecular evolution
-
1:CAS:528:DyaK2MXhsleltLw%3D 7938023 10.1073/pnas.91.22.10747
-
Stemmer WPC (1994) DNA shuffling by random fragmentation and reassembly: in vitro recombination for molecular evolution. Proc Natl Acad Sci 91:10747-10751
-
(1994)
Proc Natl Acad Sci
, vol.91
, pp. 10747-10751
-
-
Stemmer, W.P.C.1
-
25
-
-
33847347613
-
Genetic and biochemical characterization of an α-l- arabinofuranosidase isolated from a compost starter mixture
-
1:CAS:528:DC%2BD2sXit1GksLk%3D 10.1016/j.enzmictec.2006.06.007
-
Wagschal K, Franqui-Espiet D, Lee CC, Kibblewhite-Accinelli RE, Robertson GH, Wong DWS (2007) Genetic and biochemical characterization of an α-l-arabinofuranosidase isolated from a compost starter mixture. Enzyme Microb Technol 40:747-753
-
(2007)
Enzyme Microb Technol
, vol.40
, pp. 747-753
-
-
Wagschal, K.1
Franqui-Espiet, D.2
Lee, C.C.3
Kibblewhite-Accinelli, R.E.4
Robertson, G.H.5
Wong, D.W.S.6
-
26
-
-
25144473735
-
Enzyme-coupled assay for β-xylosidase hydrolysis of natural substrates
-
1:CAS:528:DC%2BD2MXhtVahtr%2FO 1214693 16151120 10.1128/AEM.71.9.5318- 5323.2005
-
Wagschal K, Franqui-Espiet D, Lee CC, Robertson GH, Wong DWS (2005) Enzyme-coupled assay for β-xylosidase hydrolysis of natural substrates. Appl Environ Microbiol 71(9):5318-5323
-
(2005)
Appl Environ Microbiol
, vol.71
, Issue.9
, pp. 5318-5323
-
-
Wagschal, K.1
Franqui-Espiet, D.2
Lee, C.C.3
Robertson, G.H.4
Wong, D.W.S.5
-
27
-
-
84856233808
-
Catalytic properties of β-d-xylosidase XylBH43 from Bacillus halodurans C-125 and mutant XylBH43-W147G
-
1:CAS:528:DC%2BC38XhsFGrsb8%3D 10.1016/j.procbio.2011.07.009
-
Wagschal K, Jordan DB, Braker JD (2012) Catalytic properties of β-d-xylosidase XylBH43 from Bacillus halodurans C-125 and mutant XylBH43-W147G. Process Biochem 47:366-372
-
(2012)
Process Biochem
, vol.47
, pp. 366-372
-
-
Wagschal, K.1
Jordan, D.B.2
Braker, J.D.3
-
28
-
-
84862817365
-
Microplate-bases active/inactive 1 screen for biomass degrading enzyme library purification and gene discovery
-
1:CAS:528:DC%2BC38XktlGltbk%3D 22285853 10.1016/j.mimet.2012.01.008
-
Wagschal K, Lee CC (2012) Microplate-bases active/inactive 1 screen for biomass degrading enzyme library purification and gene discovery. J Microbiol Methods 89:83-85
-
(2012)
J Microbiol Methods
, vol.89
, pp. 83-85
-
-
Wagschal, K.1
Lee, C.C.2
-
29
-
-
0028130117
-
Multiple proline substitutions cumulatively thermostabilize Bacillus cereus ATCC7064 oligo-1,6-glucosidase: Irrefragable proof supporting the proline rule
-
1:CAS:528:DyaK2cXmvFGqsrw%3D 8001545 10.1111/j.1432-1033.1994.tb20051.x
-
Watanabe K, Masuda T, Ohashi H, Mihara H, Suzuki Y (1994) Multiple proline substitutions cumulatively thermostabilize Bacillus cereus ATCC7064 oligo-1,6-glucosidase: Irrefragable proof supporting the proline rule. Eur J Biochem 226:277-283
-
(1994)
Eur J Biochem
, vol.226
, pp. 277-283
-
-
Watanabe, K.1
Masuda, T.2
Ohashi, H.3
Mihara, H.4
Suzuki, Y.5
-
30
-
-
0025082684
-
Additivity of mutational effects in proteins
-
1:CAS:528:DyaK3cXlt1yhtL0%3D 2271534 10.1021/bi00489a001
-
Wells JA (1990) Additivity of mutational effects in proteins. Biochemistry 29(37):8509-8517
-
(1990)
Biochemistry
, vol.29
, Issue.37
, pp. 8509-8517
-
-
Wells, J.A.1
-
31
-
-
0021826423
-
Cassette mutagenesis: An efficient method for generating multiple mutations at defined sites
-
1:CAS:528:DyaL2MXkvVaks7s%3D 3891521 10.1016/0378-1119(85)90140-4
-
Wells JA, Vasser M, Powers DB (1985) Cassette mutagenesis: an efficient method for generating multiple mutations at defined sites. Gene 34:315-323
-
(1985)
Gene
, vol.34
, pp. 315-323
-
-
Wells, J.A.1
Vasser, M.2
Powers, D.B.3
-
32
-
-
0035543093
-
The depth of chemical time and the power of enzymes as catalysts
-
1:CAS:528:DC%2BD3MXntlGrsrc%3D 11747411 10.1021/ar000058i
-
Wolfenden R, Snider MJ (2001) The depth of chemical time and the power of enzymes as catalysts. Acc Chem Res 34:938-945
-
(2001)
Acc Chem Res
, vol.34
, pp. 938-945
-
-
Wolfenden, R.1
Snider, M.J.2
-
33
-
-
84864912702
-
Protein engineering of a thermostable polyol dehydrogenase
-
1:CAS:528:DC%2BC38XhtVOqt7fJ 22883556 10.1016/j.enzmictec.2012.06.006
-
Wulf H, Mallin H, Bornscheuer UT (2012) Protein engineering of a thermostable polyol dehydrogenase. Enzyme Microb Technol 51(4):217-224
-
(2012)
Enzyme Microb Technol
, vol.51
, Issue.4
, pp. 217-224
-
-
Wulf, H.1
Mallin, H.2
Bornscheuer, U.T.3
-
34
-
-
77957834477
-
Domain analysis of a modular α-l-arabinofuranosidase with a unique carbohydrate binding strategy from the fiber-degrading bacterium Fibrobacter succinogenes S85
-
1:CAS:528:DC%2BC3cXhsFSns7bJ 2950500 20709893 10.1128/JB.00503-10
-
Yoshida S, Hespen CW, Beverly RL, Mackie RI, Cann IKO (2010) Domain analysis of a modular α-l-arabinofuranosidase with a unique carbohydrate binding strategy from the fiber-degrading bacterium Fibrobacter succinogenes S85. J Bacteriol 192(20):5424-5436
-
(2010)
J Bacteriol
, vol.192
, Issue.20
, pp. 5424-5436
-
-
Yoshida, S.1
Hespen, C.W.2
Beverly, R.L.3
Mackie, R.I.4
Cann, I.K.O.5
-
35
-
-
24944455200
-
Laboratory-directed protein evolution
-
1:CAS:528:DC%2BD2MXhtFWmsbvK 1197809 16148303 10.1128/MMBR.69.3.373-392. 2005
-
Yuan L, Kurek I, English J, Keenan R (2005) Laboratory-directed protein evolution. Microbiol Mol Biol Rev 69:373-392
-
(2005)
Microbiol Mol Biol Rev
, vol.69
, pp. 373-392
-
-
Yuan, L.1
Kurek, I.2
English, J.3
Keenan, R.4
-
36
-
-
0030754926
-
Optimization of DNA shuffling for high fidelity recombination
-
1:CAS:528:DyaK2sXitF2ns74%3D 146579 9092645 10.1093/nar/25.6.1307
-
Zhao H, Arnold FH (1997) Optimization of DNA shuffling for high fidelity recombination. Nucleic Acids Res 25(6):1307-1308
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.6
, pp. 1307-1308
-
-
Zhao, H.1
Arnold, F.H.2
|