-
1
-
-
0028951325
-
Divalent metal ion binding to a conserved wobble pair defining the upstream site of cleavage of group i selfsplicing introns
-
Allain FHT, Varani G. 1995. Divalent metal ion binding to a conserved wobble pair defining the upstream site of cleavage of group I selfsplicing introns. Nucleic Acids Res 23: 341-350.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 341-350
-
-
Allain, F.H.T.1
Varani, G.2
-
2
-
-
80051779948
-
Probing the metal-ion-binding strength of the hydroxyl group
-
Al-Sogair FM, Operschall BP, Sigel A, Sigel H, Schnabl J, Sigel RKO. 2011. Probing the metal-ion-binding strength of the hydroxyl group. Chem Rev 111: 4964-5003.
-
(2011)
Chem Rev
, vol.111
, pp. 4964-5003
-
-
Al-Sogair, F.M.1
Operschall, B.P.2
Sigel, A.3
Sigel, H.4
Schnabl, J.5
Sigel, R.K.O.6
-
3
-
-
0025097912
-
Reverse self-splicing of group II intron RNAs in vitro
-
Augustin S, Müller MW, Schweyen RJ. 1990. Reverse self-splicing of group II intron RNAs in vitro. Nature 343: 383-386.
-
(1990)
Nature
, vol.343
, pp. 383-386
-
-
Augustin, S.1
Müller, M.W.2
Schweyen, R.J.3
-
4
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA. 2001. Electrostatics of nanosystems: Application to microtubules and the ribosome. Proc Natl Acad Sci 98: 10037-10041.
-
(2001)
Proc Natl Acad Sci
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
5
-
-
79956192345
-
Exon sequence requirements for excision in vivo of the bacterial group II intron RmInt1
-
Barrientos-Durán A, Chillón I, Martínez-Abarca F, Toro N. 2011. Exon sequence requirements for excision in vivo of the bacterial group II intron RmInt1. BMC Mol Biol 12: 24.
-
(2011)
BMC Mol Biol
, vol.12
, pp. 24
-
-
Barrientos-Durán, A.1
Chillón, I.2
Martínez-Abarca, F.3
Toro, N.4
-
6
-
-
0027153328
-
Essential nucleotide sequences and secondary structure elements of the hairpin ribozyme
-
Berzal-Herranz A, Joseph S, Chowrira BM, Butcher SE, Burke JM. 1993. Essential nucleotide sequences and secondary structure elements of the hairpin ribozyme. EMBO J 12: 2567-2573.
-
(1993)
EMBO J
, vol.12
, pp. 2567-2573
-
-
Berzal-Herranz, A.1
Joseph, S.2
Chowrira, B.M.3
Butcher, S.E.4
Burke, J.M.5
-
7
-
-
0242366429
-
Manganese ions induce miscleavage in the Escherichia coli RNase P RNA-catalyzed reaction
-
Branvall M, Kirsebom LA. 1999. Manganese ions induce miscleavage in the Escherichia coli RNase P RNA-catalyzed reaction. J Mol Biol 292: 53-63.
-
(1999)
J Mol Biol
, vol.292
, pp. 53-63
-
-
Branvall, M.1
Kirsebom, L.A.2
-
8
-
-
0000112965
-
Isotope-filtered NMR methods for the study of biomolecular structure and interactions
-
Breeze AL. 2000. Isotope-filtered NMR methods for the study of biomolecular structure and interactions. Prog Nucl Magn Reson Spectrosc 36: 323-372.
-
(2000)
Prog Nucl Magn Reson Spectrosc
, vol.36
, pp. 323-372
-
-
Breeze, A.L.1
-
9
-
-
3543012707
-
Crystallography & NMRSystem: A new software suite for macromolecular structure determination
-
Brünger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang J-S, Kuszewski J, Nilges M, Pannu NS, et al. 1998. Crystallography & NMRSystem: A new software suite for macromolecular structure determination. Acta Crystallogr D54: 905-921.
-
(1998)
Acta Crystallogr D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.-S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
10
-
-
84862217072
-
Database for bacterial group II introns
-
Candales MA, Duong A, Hood KS, Li T, Neufeld RAE, Sun R, McNeil BA, Wu L, Jarding AM, Zimmerly S. 2012. Database for bacterial group II introns. Nucleic Acids Res 40: D187-D190.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Candales, M.A.1
Duong, A.2
Hood, K.S.3
Li, T.4
Neufeld, R.A.E.5
Sun, R.6
McNeil, B.A.7
Wu, L.8
Jarding, A.M.9
Zimmerly, S.10
-
11
-
-
0025810123
-
Intron phylogeny: A new hypothesis
-
Cavalier-Smith T. 1991. Intron phylogeny: A new hypothesis. Trends Genet 7: 145-148.
-
(1991)
Trends Genet
, vol.7
, pp. 145-148
-
-
Cavalier-Smith, T.1
-
12
-
-
84860765238
-
Crystal structure of a group II intron in the pre-catalytic state
-
Chan RT, Robart AR, Rajashankar KR, Pyle AM, Toor N. 2012. Crystal structure of a group II intron in the pre-catalytic state. Nat Struct Mol Biol 19: 555-557.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 555-557
-
-
Chan, R.T.1
Robart, A.R.2
Rajashankar, K.R.3
Pyle, A.M.4
Toor, N.5
-
13
-
-
0028569768
-
Catalytic site components common to both splicing steps of a group II intron
-
Chanfreau G, Jacquier A. 1994. Catalytic site components common to both splicing steps of a group II intron. Science 266: 1383-1387.
-
(1994)
Science
, vol.266
, pp. 1383-1387
-
-
Chanfreau, G.1
Jacquier, A.2
-
14
-
-
0032707625
-
Calculating the electrostatic properties of RNA provides new insights into molecular interactions and function
-
Chin K, Sharp KA, Honig B, Pyle AM. 1999. Calculating the electrostatic properties of RNA provides new insights into molecular interactions and function. Nat Struct Mol Biol 6: 1055-1061.
-
(1999)
Nat Struct Mol Biol
, vol.6
, pp. 1055-1061
-
-
Chin, K.1
Sharp, K.A.2
Honig, B.3
Pyle, A.M.4
-
15
-
-
0032012610
-
Direct structure refinement against residual dipolar couplings in the presence of rhombicity of unknown magnitude
-
Clore GM, Gronenborn AM, Tjandra N. 1998. Direct structure refinement against residual dipolar couplings in the presence of rhombicity of unknown magnitude. J Magn Reson 131: 159-162.
-
(1998)
J Magn Reson
, vol.131
, pp. 159-162
-
-
Clore, G.M.1
Gronenborn, A.M.2
Tjandra, N.3
-
16
-
-
0033558318
-
Tight binding of the 5' exon to domain i of a group II self-splicing intron requires completion of the intron active site
-
Costa M, Michel F. 1999. Tight binding of the 5' exon to domain I of a group II self-splicing intron requires completion of the intron active site. EMBO J 18: 1025-1037.
-
(1999)
EMBO J
, vol.18
, pp. 1025-1037
-
-
Costa, M.1
Michel, F.2
-
17
-
-
0034665039
-
A three-dimensional perspective on exon binding by a group II self-splicing intron
-
Costa M, Michel F, Westhof E. 2000. A three-dimensional perspective on exon binding by a group II self-splicing intron. EMBO J 19: 5007-5018.
-
(2000)
EMBO J
, vol.19
, pp. 5007-5018
-
-
Costa, M.1
Michel, F.2
Westhof, E.3
-
18
-
-
0030034289
-
Retrohoming: CDNA-mediated mobility of group II introns requires a catalytic RNA
-
Curcio MJ, Belfort M. 1996. Retrohoming: cDNA-mediated mobility of group II introns requires a catalytic RNA. Cell 84: 9-12.
-
(1996)
Cell
, vol.84
, pp. 9-12
-
-
Curcio, M.J.1
Belfort, M.2
-
19
-
-
0037245938
-
Database for mobile group II introns
-
Dai L, Toor N, Olson R, Keeping A, Zimmerly S. 2003. Database for mobile group II introns. Nucleic Acids Res 31: 424-426.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 424-426
-
-
Dai, L.1
Toor, N.2
Olson, R.3
Keeping, A.4
Zimmerly, S.5
-
20
-
-
3242886771
-
PDB2PQR: An automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
-
Dolinsky TJ, Nielsen JE, McCammon JA, Baker NA. 2004. PDB2PQR: An automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Nucleic Acids Res 32: W665-W667.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Dolinsky, T.J.1
Nielsen, J.E.2
McCammon, J.A.3
Baker, N.A.4
-
21
-
-
48149099082
-
Divalent metal ions tune the self-splicing reaction of the yeast mitochondrial group II intron Sc. Ai5γ
-
Erat MC, Sigel RKO. 2008. Divalent metal ions tune the self-splicing reaction of the yeast mitochondrial group II intron Sc.ai5γ. J Biol Inorg Chem 13: 1025-1036.
-
(2008)
J Biol Inorg Chem
, vol.13
, pp. 1025-1036
-
-
Erat, M.C.1
Sigel, R.K.O.2
-
22
-
-
80051751172
-
Methods to detect and characterize metal ion binding sites in RNA
-
Erat MC, Sigel RKO. 2011. Methods to detect and characterize metal ion binding sites in RNA. Met Ions Life Sci 9: 37-100.
-
(2011)
Met Ions Life Sci
, vol.9
, pp. 37-100
-
-
Erat, M.C.1
Sigel, R.K.O.2
-
23
-
-
34250647750
-
Solution structure of domain 6 from a self-splicing group II intron ribozyme: A Mg2+ binding site is located close to the stacked branch adenosine
-
Erat MC, Zerbe O, Fox T, Sigel RKO. 2007. Solution structure of domain 6 from a self-splicing group II intron ribozyme: A Mg2+ binding site is located close to the stacked branch adenosine. ChemBioChem 8: 306-314.
-
(2007)
ChemBioChem
, vol.8
, pp. 306-314
-
-
Erat, M.C.1
Zerbe, O.2
Fox, T.3
Sigel, R.K.O.4
-
24
-
-
0030894573
-
Mobility of yeast mitochondrial group II introns: Engineering a new site specificity and retrohoming via full reverse splicing
-
Eskes R, Yang J, Lambowitz AM, Perlman PS. 1997. Mobility of yeast mitochondrial group II introns: Engineering a new site specificity and retrohoming via full reverse splicing. Cell 88: 865-874.
-
(1997)
Cell
, vol.88
, pp. 865-874
-
-
Eskes, R.1
Yang, J.2
Lambowitz, A.M.3
Perlman, P.S.4
-
25
-
-
34250613522
-
From nucleotides to ribozymes-a comparison of their metal ion binding properties
-
Freisinger E, Sigel RKO. 2007. From nucleotides to ribozymes-a comparison of their metal ion binding properties. Coord Chem Rev 251: 1834-1851.
-
(2007)
Coord Chem Rev
, vol.251
, pp. 1834-1851
-
-
Freisinger, E.1
Sigel, R.K.O.2
-
26
-
-
28844492581
-
In vitro transcription and purification of RNAs of different size
-
Gallo S, Furler M, Sigel RKO. 2005. In vitro transcription and purification of RNAs of different size. Chimia 59: 812-816.
-
(2005)
Chimia
, vol.59
, pp. 812-816
-
-
Gallo, S.1
Furler, M.2
Sigel, R.K.O.3
-
27
-
-
6444222991
-
Use of glass electrodes to measure acidities in deuterium oxide
-
Glasoe PK, Long FA. 1960. Use of glass electrodes to measure acidities in deuterium oxide. J Phys Chem 64: 188-190.
-
(1960)
J Phys Chem
, vol.64
, pp. 188-190
-
-
Glasoe, P.K.1
Long, F.A.2
-
28
-
-
34250349882
-
A second divalent metal ion in the group II intron reaction center
-
Gordon PM, Fong R, Piccirilli JA. 2007. A second divalent metal ion in the group II intron reaction center. Chem Biol 14: 607-612.
-
(2007)
Chem Biol
, vol.14
, pp. 607-612
-
-
Gordon, P.M.1
Fong, R.2
Piccirilli, J.A.3
-
29
-
-
0031576336
-
Torsion angle dynamics for NMR structure calculation with the new program DYANA
-
Güntert P, Mumenthaler C, Wüthrich K. 1997. Torsion angle dynamics for NMR structure calculation with the new program DYANA. J Mol Biol 273: 283-298.
-
(1997)
J Mol Biol
, vol.273
, pp. 283-298
-
-
Güntert, P.1
Mumenthaler, C.2
Wüthrich, K.3
-
30
-
-
0034698288
-
Group II introns designed to insert into therapeutically relevant DNA target sites in human cells
-
Guo H, Karberg M, Long M, Jones JP III, Sullenger B, Lambowitz AM. 2000. Group II introns designed to insert into therapeutically relevant DNA target sites in human cells. Science 289: 452-457.
-
(2000)
Science
, vol.289
, pp. 452-457
-
-
Guo, H.1
Karberg, M.2
Long, M.3
Jones III, J.P.4
Sullenger, B.5
Lambowitz, A.M.6
-
31
-
-
0034130999
-
Filamentous bacteriophage for aligning RNA, DNA, and proteins for measurement of nuclear magnetic resonance dipolar coupling interactions
-
Hansen MR, Hanson P, Pardi A. 2000. Filamentous bacteriophage for aligning RNA, DNA, and proteins for measurement of nuclear magnetic resonance dipolar coupling interactions. Methods Enzymol 317: 220-240.
-
(2000)
Methods Enzymol
, vol.317
, pp. 220-240
-
-
Hansen, M.R.1
Hanson, P.2
Pardi, A.3
-
32
-
-
0033544719
-
Stitching together RNA tertiary architectures
-
Hermann T, Patel DJ. 1999. Stitching together RNA tertiary architectures. J Mol Biol 294: 829-849.
-
(1999)
J Mol Biol
, vol.294
, pp. 829-849
-
-
Hermann, T.1
Patel, D.J.2
-
33
-
-
0035072685
-
Improved NMR spectra of a protein-DNA complex through rational mutagenesis and the application of a sensitivity optimized isotope-filtered NOESY experiment
-
Iwahara J, Wojciak JM, Clubb RT. 2001. Improved NMR spectra of a protein-DNA complex through rational mutagenesis and the application of a sensitivity optimized isotope-filtered NOESY experiment. J Biomol NMR 19: 231-241.
-
(2001)
J Biomol NMR
, vol.19
, pp. 231-241
-
-
Iwahara, J.1
Wojciak, J.M.2
Clubb, R.T.3
-
34
-
-
0025755708
-
Splice site selection and role of the lariat in a group II intron
-
Jacquier A, Jacquesson-Breuleux N. 1991. Splice site selection and role of the lariat in a group II intron. J Mol Biol 219: 415-428.
-
(1991)
J Mol Biol
, vol.219
, pp. 415-428
-
-
Jacquier, A.1
Jacquesson-Breuleux, N.2
-
35
-
-
0023643081
-
Multiple exon-binding sites in class II selfsplicing introns
-
Jacquier A, Michel F. 1987. Multiple exon-binding sites in class II selfsplicing introns. Cell 50: 17-29.
-
(1987)
Cell
, vol.50
, pp. 17-29
-
-
Jacquier, A.1
Michel, F.2
-
36
-
-
0026695012
-
Group II introns deleted for multiple substructures retain self-splicing activity
-
Koch JL, Boulanger SC, Dib-Hajj SD, Hebbar SK, Perlman PS. 1992. Group II introns deleted for multiple substructures retain self-splicing activity. Mol Cell Biol 12: 1950-1958.
-
(1992)
Mol Cell Biol
, vol.12
, pp. 1950-1958
-
-
Koch, J.L.1
Boulanger, S.C.2
Dib-Hajj, S.D.3
Hebbar, S.K.4
Perlman, P.S.5
-
37
-
-
0031991610
-
Ribozyme catalysis from the major groove of group II intron domain 5
-
Konforti BB, Abramovitz DL, Duarte CM, Karpeisky A, Beigelman L, Pyle AM. 1998. Ribozyme catalysis from the major groove of group II intron domain 5. Mol Cell 1: 433-441.
-
(1998)
Mol Cell
, vol.1
, pp. 433-441
-
-
Konforti, B.B.1
Abramovitz, D.L.2
Duarte, C.M.3
Karpeisky, A.4
Beigelman, L.5
Pyle, A.M.6
-
38
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi R, Billeter M, Wüthrich K. 1996. MOLMOL: A program for display and analysis of macromolecular structures. J Mol Graph 14: 51-55.
-
(1996)
J Mol Graph
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
39
-
-
84866387404
-
Unusually high-affinity Mg2+ binding at the AU-rich sequence within the antiterminator hairpin of a Mg2+ riboswitch
-
Korth MMT, Sigel RKO. 2012. Unusually high-affinity Mg2+ binding at the AU-rich sequence within the antiterminator hairpin of a Mg2+ riboswitch. Chem Biodivers 9: 2035-2049.
-
(2012)
Chem Biodivers
, vol.9
, pp. 2035-2049
-
-
Korth, M.M.T.1
Sigel, R.K.O.2
-
40
-
-
55349140358
-
Divalent metal ions promote the formation of the 5'-splice site recognition complex in a self-splicing group II intron
-
Kruschel D, Sigel RKO. 2008. Divalent metal ions promote the formation of the 5'-splice site recognition complex in a self-splicing group II intron. J Inorg Biochem 102: 2147-2154.
-
(2008)
J Inorg Biochem
, vol.102
, pp. 2147-2154
-
-
Kruschel, D.1
Sigel, R.K.O.2
-
42
-
-
22144457082
-
A single active-site region for a group II intron
-
Lencastre Ad, Hamill S, Pyle AM. 2005. A single active-site region for a group II intron. Nat Struct Mol Biol 12: 626-627.
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 626-627
-
-
Ad, L.1
Hamill, S.2
Pyle, A.M.3
-
43
-
-
0001062635
-
Kinetics of carboxypeptidase action. I. Effect of various extrinsic factors on kinetic parameters
-
Lumry R, Smith E, Glantz R. 1951. Kinetics of carboxypeptidase action. I. Effect of various extrinsic factors on kinetic parameters. J Am Chem Soc 73: 4330-4340.
-
(1951)
J Am Chem Soc
, vol.73
, pp. 4330-4340
-
-
Lumry, R.1
Smith, E.2
Glantz, R.3
-
44
-
-
0034706026
-
Direct evidence for Watson-Crick base pairs in a dynamic region of RNA structure
-
Luy B, Marino JP. 2000. Direct evidence for Watson-Crick base pairs in a dynamic region of RNA structure. J Am Chem Soc 122: 8095-8096.
-
(2000)
J Am Chem Soc
, vol.122
, pp. 8095-8096
-
-
Luy, B.1
Marino, J.P.2
-
45
-
-
84868035651
-
Visualizing group II intron catalysis through the stages of splicing
-
Marcia M, Pyle AM. 2012. Visualizing group II intron catalysis through the stages of splicing. Cell 151: 497-507.
-
(2012)
Cell
, vol.151
, pp. 497-507
-
-
Marcia, M.1
Pyle, A.M.2
-
46
-
-
0032110340
-
Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPACIUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy
-
Markley JL, Bax A, Arata Y, Hilbers CW, Kaptein R, Sykes BD, Wright PE, Wüthrich K. 1998. Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPACIUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy. J Biomol NMR 12: 1-23.
-
(1998)
J Biomol NMR
, vol.12
, pp. 1-23
-
-
Markley, J.L.1
Bax, A.2
Arata, Y.3
Hilbers, C.W.4
Kaptein, R.5
Sykes, B.D.6
Wright, P.E.7
Wüthrich, K.8
-
47
-
-
33644783626
-
Introns and the origin of nucleus-cytosol compartmentalization
-
Martin W, Koonin EV. 2006. Introns and the origin of nucleus-cytosol compartmentalization. Nature 440: 41-45.
-
(2006)
Nature
, vol.440
, pp. 41-45
-
-
Martin, W.1
Koonin, E.V.2
-
48
-
-
0034882101
-
The evolution of controlled multitasked gene networks: The role of introns and other noncoding RNAs in the development of complex organisms
-
Mattick JS, Gagen MJ. 2001. The evolution of controlled multitasked gene networks: The role of introns and other noncoding RNAs in the development of complex organisms. Mol Biol Evol 18: 1611-1630.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1611-1630
-
-
Mattick, J.S.1
Gagen, M.J.2
-
49
-
-
0024428420
-
Comparative and functional anatomy of group II catalytic introns-a review
-
Michel F, Umesono K, Ozeki H. 1989. Comparative and functional anatomy of group II catalytic introns-a review. Gene 82: 5-30.
-
(1989)
Gene
, vol.82
, pp. 5-30
-
-
Michel, F.1
Umesono, K.2
Ozeki, H.3
-
50
-
-
0028904152
-
Conversion of a group II intron into a new multiple-turnover ribozyme that selectively cleaves oligonucleotides: Elucidation of reaction mechanism and structure/function relationships
-
Michels WJ Jr, Pyle AM. 1995. Conversion of a group II intron into a new multiple-turnover ribozyme that selectively cleaves oligonucleotides: Elucidation of reaction mechanism and structure/function relationships. Biochemistry 34: 2965-2977.
-
(1995)
Biochemistry
, vol.34
, pp. 2965-2977
-
-
Michels Jr., W.J.1
Pyle, A.M.2
-
52
-
-
0034161995
-
Rules for DNA target-site recognition by a lactococcal group II intron enable retargeting of the intron to specific DNA sequences
-
Mohr G, Smith D, Belfort M, Lambowitz AM. 2000. Rules for DNA target-site recognition by a lactococcal group II intron enable retargeting of the intron to specific DNA sequences. Genes Dev 14: 559-573.
-
(2000)
Genes Dev
, vol.14
, pp. 559-573
-
-
Mohr, G.1
Smith, D.2
Belfort, M.3
Lambowitz, A.M.4
-
53
-
-
0026640362
-
New reactions catalyzed by a group II intron ribozyme with RNA and DNA substrates
-
Mörl M, Niemer I, Schmelzer C. 1992. New reactions catalyzed by a group II intron ribozyme with RNA and DNA substrates. Cell 70: 803-810.
-
(1992)
Cell
, vol.70
, pp. 803-810
-
-
Mörl, M.1
Niemer, I.2
Schmelzer, C.3
-
54
-
-
0036081434
-
NCIR: A database of non-canonical interactions in known RNA structures
-
Nagaswamy U, Larios-Sanz M, Hury J, Collins S, Zhang Z, Zhao Q, Fox GE. 2002. NCIR: A database of non-canonical interactions in known RNA structures. Nucleic Acids Res 30: 395-397.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 395-397
-
-
Nagaswamy, U.1
Larios-Sanz, M.2
Hury, J.3
Collins, S.4
Zhang, Z.5
Zhao, Q.6
Fox, G.E.7
-
55
-
-
0000450918
-
An improved double-tuned and isotope-filtered pulse scheme based on a pulsed field gradient and a wide-band inversion shaped pulse
-
Ogura K, Terasawa H, Inagaki F. 1996. An improved double-tuned and isotope-filtered pulse scheme based on a pulsed field gradient and a wide-band inversion shaped pulse. J Biomol NMR 8: 492-498.
-
(1996)
J Biomol NMR
, vol.8
, pp. 492-498
-
-
Ogura, K.1
Terasawa, H.2
Inagaki, F.3
-
56
-
-
84900412169
-
Characterization of metal ion-nucleic acid interactions in solution
-
Pechlaner M, Sigel RKO. 2012. Characterization of metal ion-nucleic acid interactions in solution. Met Ions Life Sci 10: 1-42.
-
(2012)
Met Ions Life Sci
, vol.10
, pp. 1-42
-
-
Pechlaner, M.1
Sigel, R.K.O.2
-
57
-
-
0022551978
-
A self-splicing RNA excises an intron lariat
-
Peebles CL, Perlman PS, Mecklenburg KL, Petrillo ML, Tabor JH, Jarrell KA, Cheng HL. 1986. A self-splicing RNA excises an intron lariat. Cell 44: 213-223.
-
(1986)
Cell
, vol.44
, pp. 213-223
-
-
Peebles, C.L.1
Perlman, P.S.2
Mecklenburg, K.L.3
Petrillo, M.L.4
Tabor, J.H.5
Jarrell, K.A.6
Cheng, H.L.7
-
58
-
-
77952831096
-
The tertiary structure of group II introns: Implications for biological function and evolution
-
Pyle AM. 2010. The tertiary structure of group II introns: Implications for biological function and evolution. Crit Rev Biochem Mol Biol 45: 215-232.
-
(2010)
Crit Rev Biochem Mol Biol
, vol.45
, pp. 215-232
-
-
Pyle, A.M.1
-
59
-
-
0027997590
-
Replacement of the conserved G•U with a G-C pair at the cleavage site of the Tetrahymena ribozyme decreases binding, reactivity, and fidelity
-
Pyle AM, Moran S, Strobel SA, Chapman T, Turner DH, Cech TR. 1994. Replacement of the conserved G•U with a G-C pair at the cleavage site of the Tetrahymena ribozyme decreases binding, reactivity, and fidelity. Biochemistry 33: 13856-13863.
-
(1994)
Biochemistry
, vol.33
, pp. 13856-13863
-
-
Pyle, A.M.1
Moran, S.2
Strobel, S.A.3
Chapman, T.4
Turner, D.H.5
Cech, T.R.6
-
60
-
-
0345035508
-
Antagonistic substrate binding by a group II intron ribozyme
-
Qin PZ, Pyle AM. 1999. Antagonistic substrate binding by a group II intron ribozyme. J Mol Biol 291: 15-27.
-
(1999)
J Mol Biol
, vol.291
, pp. 15-27
-
-
Qin, P.Z.1
Pyle, A.M.2
-
61
-
-
0025695458
-
Sequence requirements of the hammerhead RNA self-cleavage reaction
-
Ruffner DE, Stormo GD, Uhlenbeck OC. 1990. Sequence requirements of the hammerhead RNA self-cleavage reaction. Biochemistry 29: 10695-10702.
-
(1990)
Biochemistry
, vol.29
, pp. 10695-10702
-
-
Ruffner, D.E.1
Stormo, G.D.2
Uhlenbeck, O.C.3
-
63
-
-
0022446227
-
Self-splicing of group II introns in vitro: Mapping of the branch point and mutational inhibition of lariat formation
-
Schmelzer C, Schweyen RJ. 1986. Self-splicing of group II introns in vitro: Mapping of the branch point and mutational inhibition of lariat formation. Cell 46: 557-565.
-
(1986)
Cell
, vol.46
, pp. 557-565
-
-
Schmelzer, C.1
Schweyen, R.J.2
-
64
-
-
77949905333
-
Controlling ribozyme activity by metal ions
-
Schnabl J, Sigel RKO. 2010. Controlling ribozyme activity by metal ions. Curr Opin Chem Biol 14: 269-275.
-
(2010)
Curr Opin Chem Biol
, vol.14
, pp. 269-275
-
-
Schnabl, J.1
Sigel, R.K.O.2
-
66
-
-
0022131865
-
On the origin of RNA splicing and introns
-
Sharp PA. 1985. On the origin of RNA splicing and introns. Cell 42: 397-400.
-
(1985)
Cell
, vol.42
, pp. 397-400
-
-
Sharp, P.A.1
-
67
-
-
21244480925
-
Group II intron ribozymes and metal ions-a delicate relationship
-
Sigel RKO. 2005. Group II intron ribozymes and metal ions-a delicate relationship. Eur J Inorg Chem 2005: 2281-2292.
-
(2005)
Eur J Inorg Chem
, vol.2005
, pp. 2281-2292
-
-
Sigel, R.K.O.1
-
68
-
-
33846887629
-
Alternative roles for metal ions in enzyme catalysis and the implications for ribozyme chemistry
-
Sigel RKO, Pyle AM. 2007. Alternative roles for metal ions in enzyme catalysis and the implications for ribozyme chemistry. Chem Rev 107: 97-113.
-
(2007)
Chem Rev
, vol.107
, pp. 97-113
-
-
Sigel, R.K.O.1
Pyle, A.M.2
-
69
-
-
84902555867
-
Metal ion interactions with nucleic acids and their constituent
-
ed. Poepelmeier K, Reedjik J, Elsevier, Oxford, UK
-
Sigel H, Sigel RKO. 2013. Metal ion interactions with nucleic acids and their constituent. In Comprehensive inorganic chemistry II (ed. Poepelmeier K, Reedjik J), pp. 623-660. Elsevier, Oxford, UK.
-
(2013)
Comprehensive Inorganic Chemistry II
, pp. 623-660
-
-
Sigel, H.1
Sigel, R.K.O.2
-
71
-
-
0742288004
-
Solution structure of domain 5 of a group II intron ribozyme reveals a new RNA motif
-
Sigel RKO, Sashital DG, Abramovitz DL, Palmer AG III, Butcher SE, Pyle AM. 2004. Solution structure of domain 5 of a group II intron ribozyme reveals a new RNA motif. Nat Struct Mol Biol 11: 187-192.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 187-192
-
-
Sigel, R.K.O.1
Sashital, D.G.2
Abramovitz, D.L.3
Palmer III, A.G.4
Butcher, S.E.5
Pyle, A.M.6
-
72
-
-
0037380833
-
Method for dialysis of samples in microliter volumes
-
Sodhi R, Rajput YS. 2003. Method for dialysis of samples in microliter volumes. Anal Biochem 315: 141-142.
-
(2003)
Anal Biochem
, vol.315
, pp. 141-142
-
-
Sodhi, R.1
Rajput, Y.S.2
-
73
-
-
0035793702
-
Guiding ribozyme cleavage through motif recognition: The mechanism of cleavage site selection by a group II intron ribozyme
-
Su LJ, Qin PZ, Michels WA, Pyle AM. 2001. Guiding ribozyme cleavage through motif recognition: The mechanism of cleavage site selection by a group II intron ribozyme. J Mol Biol 306: 655-668.
-
(2001)
J Mol Biol
, vol.306
, pp. 655-668
-
-
Su, L.J.1
Qin, P.Z.2
Michels, W.A.3
Pyle, A.M.4
-
74
-
-
29244449617
-
An obligate intermediate along the slow folding pathway of a group II intron ribozyme
-
Su LJ, Waldsich C, Pyle AM. 2005. An obligate intermediate along the slow folding pathway of a group II intron ribozyme. Nucleic Acids Res 33: 6674-6687.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6674-6687
-
-
Su, L.J.1
Waldsich, C.2
Pyle, A.M.3
-
75
-
-
0036304522
-
Productive folding to the native state by a group II intron ribozyme
-
Swisher JF, Su LJ, Brenowitz M, Anderson VE, Pyle AM. 2002. Productive folding to the native state by a group II intron ribozyme. J Mol Biol 315: 297-310.
-
(2002)
J Mol Biol
, vol.315
, pp. 297-310
-
-
Swisher, J.F.1
Su, L.J.2
Brenowitz, M.3
Anderson, V.E.4
Pyle, A.M.5
-
76
-
-
41749109563
-
Crystal structure of a self-spliced group II intron
-
Toor N, Keating KS, Taylor SD, Pyle AM. 2008a. Crystal structure of a self-spliced group II intron. Science 320: 77-82.
-
(2008)
Science
, vol.320
, pp. 77-82
-
-
Toor, N.1
Keating, K.S.2
Taylor, S.D.3
Pyle, A.M.4
-
78
-
-
0022550426
-
Excised group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro
-
van der Veen R, Arnberg AC, van der Horst G, Bonen L, Tabak HF, Grivell LA. 1986. Excised group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro. Cell 44: 225-234.
-
(1986)
Cell
, vol.44
, pp. 225-234
-
-
Van Der Veen, R.1
Arnberg, A.C.2
Van Der Horst, G.3
Bonen, L.4
Tabak, H.F.5
Grivell, L.A.6
-
80
-
-
0032539968
-
Sequence specificity of a group II intron ribozyme: Multiple mechanisms for promoting unusually high discrimination against mismatched targets
-
Xiang Q, Qin PZ, Michels WJ, Freeland K, Pyle AM. 1998. Sequence specificity of a group II intron ribozyme: Multiple mechanisms for promoting unusually high discrimination against mismatched targets. Biochemistry 37: 3839-3849.
-
(1998)
Biochemistry
, vol.37
, pp. 3839-3849
-
-
Xiang, Q.1
Qin, P.Z.2
Michels, W.J.3
Freeland, K.4
Pyle, A.M.5
-
81
-
-
0029931406
-
Efficient integration of an intron RNA into double-stranded DNA by reverse splicing
-
Yang J, Zimmerly S, Perlman PS, Lambowitz AM. 1996. Efficient integration of an intron RNA into double-stranded DNA by reverse splicing. Nature 381: 332-335.
-
(1996)
Nature
, vol.381
, pp. 332-335
-
-
Yang, J.1
Zimmerly, S.2
Perlman, P.S.3
Lambowitz, A.M.4
-
82
-
-
0000245730
-
Incorporating residual dipolar couplings into the NMR solution structure determination of nucleic acids
-
Zhou H, Vermeulen A, Jucker FM, Pardi A. 1999. Incorporating residual dipolar couplings into the NMR solution structure determination of nucleic acids. Biopolymers 52: 168-180.
-
(1999)
Biopolymers
, vol.52
, pp. 168-180
-
-
Zhou, H.1
Vermeulen, A.2
Jucker, F.M.3
Pardi, A.4
-
83
-
-
0030808350
-
Methods for measurement of intermolecular NOEs by multinuclear NMR spectroscopy: Application to a bacteriophage λ N-peptide/ boxB RNA complex
-
Zwahlen C, Legault P, Vincent SJF, Greenblatt J, Konrat R, Kay LE. 1997. Methods for measurement of intermolecular NOEs by multinuclear NMR spectroscopy: Application to a bacteriophage λ N-peptide/ boxB RNA complex. J Am Chem Soc 119: 6711-6721.
-
(1997)
J Am Chem Soc
, vol.119
, pp. 6711-6721
-
-
Zwahlen, C.1
Legault, P.2
Vincent, S.J.F.3
Greenblatt, J.4
Konrat, R.5
Kay, L.E.6
-
84
-
-
42149130389
-
NMR: Prediction of molecular alignment from structure using the PALES software
-
Zweckstetter M. 2008. NMR: Prediction of molecular alignment from structure using the PALES software. Nat Protoc 3: 679-690.
-
(2008)
Nat Protoc
, vol.3
, pp. 679-690
-
-
Zweckstetter, M.1
-
85
-
-
0034685436
-
Prediction of sterically induced alignment in a dilute liquid crystalline phase: Aid to protein structure determination by NMR
-
Zweckstetter M, Bax A. 2000. Prediction of sterically induced alignment in a dilute liquid crystalline phase: Aid to protein structure determination by NMR. J Am Chem Soc 122: 3791-3792.
-
(2000)
J Am Chem Soc
, vol.122
, pp. 3791-3792
-
-
Zweckstetter, M.1
Bax, A.2
|