Involvement of arabidopsis histone acetyltransferase HAC family genes in the ethylene signaling pathway

Plant and Cell Physiology

Volumn 55, Issue 2, 2014, Pages 426-435

  Li, Chao ^b,c   Xu, Jiang ^a,b   Li, Jian ^b   Li, Qingyun ^b   Yang, Hongchun ^b  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b NATIONAL INSTITUTE OF BIOLOGICAL SCIENCES   (China)

^c UNIVERSITY OF MASSACHUSETTS   (United States)

Author keywords

HAC family genes; Histone acetyltransferase

Indexed keywords

ARABIDOPSIS;

1 AMINOCYCLOPROPANECARBOXYLIC ACID; 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID; AMINO ACID; ETHYLENE; ETHYLENE DERIVATIVE; HISTONE; HISTONE ACETYLTRANSFERASE; PHYTOHORMONE;

ACETYLATION; ARABIDOPSIS; ARTICLE; DNA MICROARRAY; DRUG EFFECT; ENZYMOLOGY; FLOWER; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; HAC FAMILY GENES; METABOLISM; MULTIGENE FAMILY; PHENOTYPE; PHYSIOLOGY; PLANT LEAF; PROMOTER REGION; REPORTER GENE; SEEDLING; SIGNAL TRANSDUCTION;

HAC FAMILY GENES; HISTONE ACETYLTRANSFERASE;

ACETYLATION; AMINO ACIDS, CYCLIC; ARABIDOPSIS; ETHYLENES; FLOWERS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; GENES, REPORTER; HISTONE ACETYLTRANSFERASES; HISTONES; MULTIGENE FAMILY; MUTAGENESIS, INSERTIONAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHENOTYPE; PLANT GROWTH REGULATORS; PLANT LEAVES; PROMOTER REGIONS, GENETIC; SEEDLING; SIGNAL TRANSDUCTION;

EID: 84893843333     PISSN: 00320781     EISSN: 14719053     Source Type: Journal    
DOI: 10.1093/pcp/pct180     Document Type: Article

References (57)

1. Alonso, J.M., Hirayama, T., Roman, G., Nourizadeh, S. and Ecker, J.R. (1999) EIN2, a bifunctional transducer of ethylene and stress responses in Arabidopsis. Science 284: 2148-2152
2. An, F., Zhao, Q., Ji, Y., Li, W., Jiang, Z., Yu, X. et al. (2010) Ethyleneinduced stabilization of ETHYLENE INSENSITIVE3 and EIN3-LIKE1 is mediated by proteasomal degradation of EIN3 binding F-box 1 and 2 that requires EIN2 in Arabidopsis. Plant Cell 22: 2384-2401
3. Berger, S.L., Kouzarides, T., Shiekhattar, R. and Shilatifard, A. (2009) An operational definition of epigenetics. Genes Dev. 23: 781-783
4. Bird, A. (2007) Perceptions of epigenetics. Nature 447: 396-398
5. Bisson, M.M., Bleckmann, A., Allekotte, S. and Groth, G. (2009) EIN2, the central regulator of ethylene signalling, is localized at the ER membrane where it interacts with the ethylene receptor ETR1. Biochem. J. 424: 1-6
6. Bleecker, A.B., Estelle, M.A., Somerville, C. and Kende, H. (1988) Insensitivity to ethylene conferred by a dominant mutation in Arabidopsis thaliana. Science 241: 1086-1089
7. Chao, Q., Rothenberg, M., Solano, R., Roman, G., Terzaghi, W. and Ecker, J.R. (1997) Activation of the ethylene gas response pathway in Arabidopsis by the nuclear protein ETHYLENE-INSENSITIVE3 and related proteins. Cell 89: 1133-1144
8. Christians, M.J. and Larsen, P.B. (2007) Mutational loss of the prohibitin AtPHB3 results in an extreme constitutive ethylene response phenotype coupled with partial loss of ethylene-inducible gene expression in Arabidopsis seedlings. J. Exp. Bot. 58: 2237-2248
9. Christians, M.J., Robles, L.M., Zeller, S.M. and Larsen, P.B. (2008) The eer5 mutation, which affects a novel proteasome-related subunit, indicates a prominent role for the COP9 signalosome in resetting the ethylene-signaling pathway in Arabidopsis. Plant J. 55: 467-477
10. Chrivia, J.C., Kwok, R.P., Lamb, N., Hagiwara, M., Montminy, M.R. and Goodman, R.H. (1993) Phosphorylated CREB binds specifically to the nuclear protein CBP. Nature 365: 855-859
11. Clark, K.L., Larsen, P.B., Wang, X. and Chang, C. (1998) Association of the Arabidopsis CTR1 Raf-like kinase with the ETR1 and ERS ethylene receptors. Proc. Natl Acad. Sci. USA 95: 5401-5406
12. Das, C., Lucia, M.S., Hansen, K.C. and Tyler, J.K. (2009) CBP/p300- mediated acetylation of histone H3 on lysine 56. Nature 459: 113-117
13. Deng, W., Liu, C., Pei, Y., Deng, X., Niu, L. and Cao, X. (2007) Involvement of the histone acetyltransferase AtHAC1 in the regulation of flowering time via repression of FLOWERING LOCUS C in Arabidopsis. Plant Physiol. 143: 1660-1668
14. Di Stefano, V., Soddu, S., Sacchi, A. and D'Orazi, G. (2005) HIPK2 contributes to PCAF-mediated p53 acetylation and selective transactivation of p21Waf1 after nonapoptotic DNA damage. Oncogene 24: 5431-5442
15. Eckner, R., Ewen, M.E., Newsome, D., Gerdes, M., DeCaprio, J.A., Lawrence, J.B. et al. (1994) Molecular cloning and functional analysis of the adenovirus E1A-associated 300-kD protein (p300) reveals a protein with properties of a transcriptional adaptor. Genes Dev. 8: 869-884
16. Faiola, F., Liu, X., Lo, S., Pan, S., Zhang, K., Lymar, E. et al. (2005) Dual regulation of c-Myc by p300 via acetylation-dependent control of Myc protein turnover and coactivation of Myc-induced transcription. Mol. Cell. Biol. 25: 10220-10234
17. Fletcher, T.M. and Hansen, J.C. (1996) The nucleosomal array: Structure/ function relationships. Crit. Rev. Eukaryot. Gene Expr. 6: 149-188
18. Gagne, J.M., Smalle, J., Gingerich, D.J., Walker, J.M., Yoo, S.D., Yanagisawa, S. et al. (2004) Arabidopsis EIN3-binding F-box 1 and 2 form ubiquitin-protein ligases that repress ethylene action and promote growth by directing EIN3 degradation. Proc. Natl Acad. Sci. USA 101: 6803-6808
19. Giles, R.H., Peters, D.J. and Breuning, M.H. (1998) Conjunction dysfunction: CBP/p300 in human disease. Trends Genet. 14: 178-183
20. Giordano, A. and Avantaggiati, M.L. (1999) p300 and CBP: Partners for life and death. J. Cell Physiol. 181: 218-230
21. Goodman, R.H. and Smolik, S. (2000) CBP/p300 in cell growth, transformation, and development. Genes Dev. 14: 1553-1577
22. Grossman, S.R. (2001) p300/CBP/p53 interaction and regulation of the p53 response. Eur. J. Biochem. 268: 2773-2778
23. Gu, W., Shi, X.L. and Roeder, R.G. (1997) Synergistic activation of transcription by CBP and p53. Nature 387: 819-823
24. Guo, H. and Ecker, J.R. (2003) Plant responses to ethylene gas are mediated by SCF(EBF1/EBF2)-dependent proteolysis of EIN3 transcription factor. Cell 115: 667-677
25. Han, S.K., Song, J.D., Noh, Y.S. and Noh, B. (2007) Role of plant CBP/ p300-like genes in the regulation of flowering time. Plant J. 49: 103-114
26. Hong, L., Schroth, G.P., Matthews, H.R., Yau, P. and Bradbury, E.M. (1993) Studies of the DNA binding properties of histone H4 amino terminus. Thermal denaturation studies reveal that acetylation markedly reduces the binding constant of the H4 'tail' to DNA. J. Biol. Chem. 268: 305-314
27. Hua, J. and Meyerowitz, E.M. (1998) Ethylene responses are negatively regulated by a receptor gene family in Arabidopsis thaliana. Cell 94: 261-271
28. Huang, Y., Li, H.,Hutchison, C.E., Laskey, J. and Kieber, J.J. (2003) Biochemical and functional analysis of CTR1, a protein kinase that negatively regulates ethylene signaling in Arabidopsis. Plant J. 33: 221-233
29. Ito, A., Lai, C.H., Zhao, X., Saito, S., Hamilton, M.H., Appella, E. et al. (2001) p300/CBP-mediated p53 acetylation is commonly induced by p53-activating agents and inhibited by MDM2. EMBO J. 20: 1331-1340
30. Karamouzis, M.V., Konstantinopoulos, P.A. and Papavassiliou, A.G. (2007) Roles of CREB-binding protein (CBP)/p300 in respiratory epithelium tumorigenesis. Cell Res. 17: 324-332
31. Kieber, J.J., Rothenberg, M., Roman, G., Feldmann, K.A. and Ecker, J.R. (1993) CTR1, a negative regulator of the ethylene response pathway in Arabidopsis, encodes a member of the raf family of protein kinases. Cell 72: 427-441
32. Larsen, P.B. and Cancel, J.D. (2003) Enhanced ethylene responsiveness in the Arabidopsis eer1 mutant results from a loss-of-function mutation in the protein phosphatase 2A A regulatory subunit, RCN1. Plant J. 34: 709-718
33. Luger, K. and Richmond, T.J. (1998) The histone tails of the nucleosome. Curr. Opin. Genet. Dev. 8: 140-146
34. MacDonald, V.E. and Howe, L.J. (2009) Histone acetylation: Where to go and how to get there. Epigenetics 4: 139-143
35. McDaniel, B.K. and Binder, B.M. (2012) ethylene receptor 1 (etr1) is sufficient and has the predominant role in mediating inhibition of ethylene responses by silver in Arabidopsis thaliana. J. Biol. Chem. 287: 26094-26103
36. Mujtaba, S., He, Y., Zeng, L., Yan, S., Plotnikova, O., Sachchidanand. et al. (2004) Structural mechanism of the bromodomain of the coactivator CBP in p53 transcriptional activation. Mol. Cell 13: 251-263
37. Natarajan, K., Jackson, B.M., Rhee, E. and Hinnebusch, A.G. (1998) yTAFII61 has a general role in RNA polymerase II transcription and is required by Gcn4p to recruit the SAGA coactivator complex. Mol. Cell 2: 683-692
38. Nettles, K.W., Gil, G., Nowak, J., Metivier, R., Sharma, V.B. and Greene, G.L. (2008) CBP is a dosage-dependent regulator of nuclear factor-kappaB suppression by the estrogen receptor. Mol. Endocrinol. 22: 263-272
39. Norton, V.G., Imai, B.S., Yau, P. and Bradbury, E.M. (1989) Histone acetylation reduces nucleosome core particle linking number change. Cell 57: 449-457
40. Pandey, R., Muller, A., Napoli, C.A., Selinger, D.A., Pikaard, C.S., Richards, E.J. et al. (2002) Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes. Nucleic Acids Res. 30: 5036-5055
41. Potuschak, T., Lechner, E., Parmentier, Y., Yanagisawa, S., Grava, S., Koncz, C. et al. (2003) EIN3-dependent regulation of plant ethylene hormone signaling by two Arabidopsis F box proteins: EBF1 and EBF2. Cell 115: 679-689
42. Robles, L.M., Wampole, J.S., Christians, M.J. and Larsen, P.B. (2007) Arabidopsis enhanced ethylene response 4 encodes an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. J. Exp. Bot. 58: 2627-2639
43. Smalle, J., Haegman, M., Kurepa, J., Van Montagu, M. and Straeten, D.V. (1997) Ethylene can stimulate Arabidopsis hypocotyl elongation in the light. Proc. Natl Acad. Sci. USA 94: 2756-2761
44. Solano, R., Stepanova, A., Chao, Q and Ecker, J.R. (1998) Nuclear events in ethylene signaling: A transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSEFACTOR1. Genes Dev. 12: 3703-3714
45. Steger, D.J. and Workman, J.L. (1996) Remodeling chromatin structures for transcription: What happens to the histones?. Bioessays 18: 875-884
46. Stein, R.W., Corrigan, M., Yaciuk, P., Whelan, J. and Moran, E. (1990) Analysis of E1A-mediated growth regulation functions: Binding of the 300-kilodalton cellular product correlates with E1A enhancer repression function and DNA synthesis-inducing activity. J. Virol. 64: 4421-4427
47. Stepanova, A.N. and Alonso, J.M. (2009) Ethylene signaling and response: Where different regulatory modules meet. Curr. Opin. Plant Biol. 12: 548-555
48. Strahl, B.D. and Allis, C.D. (2000) The language of covalent histone modifications. Nature 403: 41-45
49. Tarakhovsky, A. (2010) Tools and landscapes of epigenetics. Nat. Immunol. 11: 565-568
50. Tie, F., Banerjee, R., Stratton, C.A., Prasad-Sinha, J., Stepanik, V., Zlobin, A. et al. (2009) CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila Polycomb silencing. Development 136: 3131-3141
51. Tsuchisaka, A. and Theologis, A. (2004) Unique and overlapping expression patterns among the Arabidopsis 1-amino-cyclopropane-1- carboxylate synthase gene family members. Plant Physiol. 136: 2982-3000
52. Wang, J., Weaver, I.C., Gauthier-Fisher, A., Wang, H., He, L., Yeomans, J. et al. (2010) CBP histone acetyltransferase activity regulates embryonic neural differentiation in the normal and Rubinstein-Taybi syndrome brain. Dev. Cell 18: 114-125
53. Wang, K.L., Li, H. and Ecker, J.R. (2002) Ethylene biosynthesis and signaling networks. Plant Cell 14(Suppl), S131-S151
54. Wang, W., Esch, J.J., Shiu, S.H., Agula, H., Binder, B.M., Chang, C. et al. (2006) Identification of important regions for ethylene binding and signaling in the transmembrane domain of the ETR1 ethylene receptor of Arabidopsis. Plant Cell 18: 3429-3442
55. Xie, F., Liu, Q. and Wen, C.K. (2006) Receptor signal output mediated by the ETR1 N terminus is primarily subfamily I receptor dependent. Plant Physiol. 142: 492-508
56. Yoo, S.D., Cho, Y. and Sheen, J. (2009) Emerging connections in the ethylene signaling network. Trends Plant Sci. 14: 270-279
57. Yoo, S.D. and Sheen, J. (2008) MAPK signaling in plant hormone ethylene signal transduction. Plant Signal Behav 3: 848-849