Role of plant CBP/p300-like genes in the regulation of flowering time

Plant Journal

Volumn 49, Issue 1, 2007, Pages 103-114

  Han, Soon Ki ^a,b   Song, Ju Dong ^b   Noh, Yoo Sun ^b   Noh, Bosl ^a,b  

^a Gyeongsang National University   (South Korea)

^b Seoul National University   (South Korea)

Author keywords

CREB binding protein p300; Flowering; FLOWERING LOCUS C; Histone acetyltransferase; Histone deacetylase; Transcription

Indexed keywords

HISTONE ACETYLTRANSFERASE; HISTONE DEACETYLASE; REVERSIBLE PROTEIN;

BINDING ENERGY; ENZYMES; PLANTS (BOTANY);

GENES;

ARABIDOPSIS PROTEIN; FLF PROTEIN, ARABIDOPSIS; HISTONE ACETYLTRANSFERASE; HISTONE ACETYLTRANSFERASE PCAF; MADS DOMAIN PROTEIN;

ARABIDOPSIS; ARTICLE; FLOWER; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PHYSIOLOGY; TIME;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; FLOWERS; GENE EXPRESSION REGULATION, PLANT; HISTONE ACETYLTRANSFERASES; MADS DOMAIN PROTEINS; MUTAGENESIS, INSERTIONAL; P300-CBP TRANSCRIPTION FACTORS; TIME FACTORS;

ACETYLATION; BINDING; ENZYMES; GENES; PLANTS;

ANIMALIA; ARABIDOPSIS;

EID: 33845646899     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2006.02939.x     Document Type: Article

References (57)

1. Ausín, I., Alonso-Blanco, C., Jarillo, J., Ruiz-García, L. and Martínez-Zapater, J.M. (2004) Regulation of flowering time by FVE, a retinoblastoma-associated protein. Nature Genet. 36, 162-166.
2. Bannister, A.J. and Kouzarides, T. (1996) The CBP co-activator is a histone acetyltranscferase. Nature, 384, 641-643.
3. Bereshchenko, O.R., Gu, W. and Dalla-Favera, R. (2002) Acetylation inactivates the transcriptional repressor BCL6. Nature Genet. 32, 606-613.
4. Bezerra, I.C., Michaels, S.D., Schomberg, F.M. and Amasino, R.M. (2004) Lesions in the mRNA cap-binding gene ABA HYPERSENSITIVE 1 suppress FRIGIDA-mediated delayed flowering in Arabidopsis. Plant J. 40, 112-119.
5. Bharti, K., von Koskull-Döring, P., Bharti, S., Kumar, P., Tintschl-Körbitzer, A., Treuter, E. and Nover, L. (2004) Tomato heat stress transcription coactivator with a histone-like motif interacting with the plant CREB binding protein ortholog HAC1. Plant Cell, 16, 1521-1535.
6. Bordoli, L., Netsch, M., Lüthi, U., Lutz, W. and Eckner, R. (2001) Plants orthologs of p300/CBP: conservation of a core domain in metazoan p300/CBP acetyltransferase-related proteins. Nucl. Acids Res. 29, 589-597.
7. Boss, P.K., Bastow, R.M., Mylne, J.S. and Dean, C. (2004) Multiple pathways in the decision to flower: enabling, promoting, and resetting. Plant Cell, 16, S18-S31.
8. Choi, K., Kim, S., Kim, S.Y., Kim, M., Hyun, Y., Choe, S., Kim, S.G., Michaels, S. and Lee, I. (2005) SUPPRESSOR OF FRIGIDA3 encodes a nuclear ACTIN-RELATED PROTEIN6 required for a floral repression in Arabidopsis. Plant Cell, 17, 2647-2660.
9. Clough, S.J. and Bent, A.F. (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
10. Deal, R.B., Kandasamy, M.K., Mckinney, E.C. and Meagher, R.B. (2005) The nuclear actin-related ARP6 is a pleiotropic development regulator required for the maintenance of FLOWERING LOCUS C expression and repression of flowering in Arabidopsis. Plant Cell, 17, 2633-2646.
11. Dhalluin, C., Carlson, J.E., Zeng, L., He, C., Aggarwal, A.K. and Zhou, M.M. (1999) Structure and ligand of a histone acetyltransferase bromodomain. Nature, 399, 491-496.
12. Doyle, M.R., Bizzell, C.M., Keller, M.R., Michaels, S.D., Song, J., Noh, Y.-S. and Amasino, R.M. (2005) HUA2 is required for the expression of floral repressors in Arabidopsis thaliana. Plant J. 41, 376-385.
13. Eberharter, A. and Becker, P.B. (2000) Histone acetylation: a switch between repressive and permissive chromatin. EMBO Rep. 3, 224-229.
14. Goodman, R.H. and Smolik, S. (2000) CBP/p300 in cell growth, transformation, and development. Genes Dev. 14, 1553-1577.
15. Gu, W. and Roeder, R.G. (1997) Activation of p53 sequence-specific DNA binding by acetylation of the p53 C-terminal domain. Cell, 90, 595-606.
16. Guidez, F., Howell, L., Isalan, M. et al. (2005) Histone acetyltransferase activity of p300 is required for transcriptional repression by the promyeolocytic leukemia zinc finger protein. Mol. Cell. Biol. 25, 5552-5566.
17. He, Y. and Amasino, R.M. (2005) Role of chromatin modification in flowering-time control. Trends Plant Sci. 10, 30-35.
18. He, Y., Michaels, S.D. and Amasino, R.M. (2003) Regulation of flowering time by histone acetylation in Arabidopsis. Science, 302, 1751-1754.
19. He, Y., Doyle, M.R. and Amasino, R.M. (2004) PAF1-complex-mediated histone methylation of FLOWERING LOCUS C chromatin is required for the vernalization responsive, winter annual habit in Arabidopsis. Genes Dev. 18, 2774-2784.
20. Johanson, U., West, J., Lister, C., Michaels, S., Amasino, R. and Dean, C. (2000) Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time. Science, 290, 344-347.
21. Kalkhoven, E. (2004) CBP and p300: HATs for different occasions. Biochem. Pharmacol. 68, 1145-1155.
22. Kawasaki, H., Eckner, R., Yao, T.P., Taira, K., Chiu, R., Livingston, D.M. and Yokoyama, K.K. (1998) Distinct roles of the co-activators p300 and CBP in retinoic-acid-induced F9-cell differentiation. Nature, 393, 284-289.
23. Kim, S.Y., He, Y., Jacob, Y., Noh, Y.-S., Michaels, S. and Amasino, R. (2005) Establishment of the vernalization-responsive, winter-annual habit Arabidopsis requires a putative histone H3 methyl transferase. Plant Cell, 17, 3301-3310.
24. Korzus, E., Rosenfeld, M.G. and Mayford, M. (2004) CBP histone acetyltransferase activity is a critical component of memory consolidation. Neuron. 42, 961-972.
25. Lee, T.I. and Young, R.A. (2000) Transcription of eukaryotic protein-coding genes. Annu. Rev. Genet. 34, 77-137.
26. Lee, I., Aukerman, M.J., Gore, S.L., Lohman, K.N., Michaels, S.D., Weaver, L.M., John, M.C., Feldmann, K.A. and Amasino, R.M. (1994) Isolation of LUMINIDEPENDENS: a gene involved in the control of flowering time in Arabidopsis. Plant Cell, 6, 75-83.
27. Lim, M.-H., Kim, J., Kim, Y.-S., Chung, K.-S., Seo, Y.-H., Lee, I., Kim, J., Hong, C.B., Kim, H.-J. and Park, C.-M. (2004) A new Arabidopsis gene, FLK, encodes an RNA binding protein with K homology motifs and regulates flowering time via FLOWERING LOCUS C. Plant Cell, 16, 731-740.
28. Macknight, R., Durox, M., Laurie, R., Dijkwel, P., Simpson, G. and Dean, C. (2002) Functional significance or the alternative transcript processing of the Arabidopsis floral promoter FCA. Plant Cell, 14, 877-888.
29. Martínez-Balbás, M.A., Bauer, U.-M., Nielson, S.J., Brehm, A. and Kouzarides, T. (2000) Regulation of E2F1 activity by acetylation. EMBO J. 19, 662-671.
30. Michaels, S.D. and Amasino, R.M. (2001) Loss of FLOWERING LOCUS C activity eliminates the late flowering of FRIGIDIA and autonomous pathway mutants but not responsiveness to vernalization. Plant Cell, 13, 935-941.
31. Michaels, S.D., Bezerra, I.C. and Amasino, R.M. (2004) FRIGIDA-related genes are required for the winter-annual habit in Arabidopsis. Proc. Natl Acad. Sci. USA, 9, 3281-3285.
32. Michaels, S.D., Himelblau, E., Kim, S.Y., Schomburg, F.M. and Amasino, R.M. (2005) Integration of flowering signals in winter-annual Arabidopsis. Plant Physiol. 137, 149-156.
33. Noh, Y.S. and Amasino, R.M. (2003) PIE1, an ISWI family gene, is required for FLC activation and floral repression in Arabidopsis. Plant Cell, 15, 1671-1682.
34. Noh, B. and Noh, Y.-S. (2006) Chromatin-mediated regulation of flowering time in Arabidopsis. Physiol. Plant, 126, 484-493.
35. Noh, B., Murphy, A.S. and Spalding, E.P. (2001) Multidrug resistance-like genes of Arabidopsis required for auxin transport and auxin-mediated development. Plant Cell, 13, 2441-2454.
36. Noh, B., Lee, S.H., Kim, H.-J., Yi, G., Shin, E.-A., Lee, M., Jung, K-J., Doyle, M.R., Amasino, R.M. and Noh, Y.-S. (2004a) Divergent roles of a pair of homologous jumonji/zinc-finger-class transcription factor proteins in the regulation of flowering time. Plant Cell, 16, 2602-2613.
37. Noh, Y.S., Bizzel, C.M., Noh, B., Schomberg, F.M. and Amasino, R.M. (2004b) EARLY FLOWERING 5 acts as a floral repressor in Arabidopsis. Plant J. 38, 664-672.
38. Ogryzko, V.V., Schiltz, R.L., Russanova, V., Howard, B.H. and Nakaratani, Y. (1996) The transcriptional coactivators p300 and CBP are histone acetyltransferases. Cell, 87, 953-959.
39. Oh, S., Zhang, H., Ludwig, P. and van Nocker, S. (2004) A mechanism related to the yeast transcriptional regulator Paf1c is required for expression of the Arabidopsis FLC/MAF MADS box gene family. Plant Cell, 16, 2940-2953.
40. Pandey, R., Muller, A., Napoli, C., Selinger, D.A., Pikaard, C.R., Richards, E.J., Bender, J., Mount, D.W. and Jorgenson, R.A. (2002) Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes. Nucl. Acids Res. 30, 5036-5055.
41. Parenicova, L., de Folter, S., Kieffer, M. et al. (2003) Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 15, 1538-1551.
42. Petrij, F., Giles, R.H., Dauwerse, H.G. et al. (1995) Rubinstein-Taybi syndrome caused by mutations in the transcriptional co-activator CBP. Nature, 376, 348-351.
43. Ponting, C.P., Blake, D.J., Davies, K.E., Kendrick-Jones, J. and Winder, S.J. (1996) ZZ and TAZ: new putative zinc fingers in dystrophin and other proteins. Trends Biochem. Sci. 21, 11-13.
44. Prigge, M.J. and Wagner, D.R. (2001) The Arabidopsis SERRATE gene encodes a zinc-finger protein required for normal shoot development. Plant Cell, 13, 1263-1279.
45. Reeves, P.H., Murtas, G., Dash, S. and Coupland, G. (2002) early in short days 4, a mutation in Arabidopsis that causes early flowering and reduces the mRNA abundance of the floral repressor FLC. Development, 129, 5349-5361.
46. Schomburg, F.M., Patton, D.A., Meinke, D.W. and Amasino, R.M. (2001) FPA, a gene involved in floral induction in Arabidopsis, encodes a protein containing RNA-recognition motifs. Plant Cell, 13, 1427-1436.
47. Shi, Y., Lan, F., Matson, C., Mulligan, P., Whetstine, J.R., Cole, P.A., Casero, R.A. and Shi, Y. (2004) Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell, 119, 941-953.
48. Simpson, G.C. and Dean, C. (2002) Arabidopsis, the Rosetta stone of flowering time? Science, 296, 285-289.
49. Simpson, G.G., Dijkwel, P.P., Quesada, V., Henderson, I. and Dean, C. (2003) FY is a 3′-end-RNA-processing factor that interacts with FCA to control the floral transition. Cell, 113, 777-787.
50. Spiegelman, B.M. and Heinrich, R. (2004) Biological control through regulated transcriptional coactivators. Cell, 119, 157-167.
51. Sterner, D.E. and Berger, S.L. (2000) Acetylation of histone and transcription-related factors. Microbiol. Mol. Biol. Rev. 64, 435-459.
52. Sung, S. and Amasino, R.M. (2004) Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3. Nature, 427, 159-164.
53. Tsukada, Y.-I., Fang, J., Erdjument-Bromage, H., Warren, M.E., Borchers, C.H., Tempst, P. and Zhang, Y. (2006) Histone demethylation by a family of JmjC domain-containing proteins. Nature, 439, 811-816.
54. Whetstine, J.R., Nottke, A., Lan, F. et al. (2006) Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases. Cell, 125, 467-481.
55. Yamane, K., Toumazou, C., Tsukada, Y., Erdjument-Bromage, H., Tempst, P., Wong, J. and Zhang, Y. (2006) JHDM2A, a JmjC-containing H3K9 demethylase, facilitates transcription activation by androgen receptor. Cell, 125, 483-495.
56. Yuan, Z.-L., Guan, Y.-J., Chatterjee, D. and Chin, Y.E. (2005) Stat3 dimerization regulated by reversible acetylation of single lysine residue. Science, 307, 269-273.
57. Zhang, H., Ransom, C., Ludwig, P. and van Nocker, S. (2003) Genetic analysis of early flowering mutants in Arabidopsis defines a class of pleiotropic developmental regulator required for expression of the flowering-time switch FLOWERING LOCUS C. Genetics, 164, 347-358.