-
1
-
-
0345839252
-
Where will new antibiotics come from?
-
doi:10.1038/nrmicro727. PubMed: 15040181
-
Walsh CT (2003) Where will new antibiotics come from? Nat Rev Microbiol 1: 65-70. doi:10.1038/nrmicro727. PubMed: 15040181.
-
(2003)
Nat Rev Microbiol
, vol.1
, pp. 65-70
-
-
Walsh, C.T.1
-
2
-
-
78751477224
-
Challenges of antibacterial discovery
-
doi:10.1128/CMR.00030-10. PubMed: 21233508
-
Silver LL (2011) Challenges of antibacterial discovery. Clin Microbiol Rev 24: 71-109. doi:10.1128/CMR.00030-10. PubMed: 21233508.
-
(2011)
Clin Microbiol Rev
, vol.24
, pp. 71-109
-
-
Silver, L.L.1
-
3
-
-
69549111337
-
Antibiotics for emerging pathogens
-
doi:10.1126/science.1176667. PubMed: 19713519
-
Fischbach MA, Walsh CT (2009) Antibiotics for emerging pathogens. Science. 325: 1089-1093. doi:10.1126/science.1176667. PubMed: 19713519.
-
(2009)
Science
, vol.325
, pp. 1089-1093
-
-
Fischbach, M.A.1
Walsh, C.T.2
-
4
-
-
77953417294
-
In front of and behind the replication fork: Bacterial type IIa topoisomerases
-
doi:10.1007/s00018-010-0299-5. PubMed: 20165898
-
Sissi C, Palumbo M (2010) In front of and behind the replication fork: bacterial type IIa topoisomerases. Cell Mol Life Sci 67: 2001-2024. doi:10.1007/s00018-010-0299-5. PubMed: 20165898.
-
(2010)
Cell Mol Life Sci
, vol.67
, pp. 2001-2024
-
-
Sissi, C.1
Palumbo, M.2
-
5
-
-
82355173219
-
Exploiting bacterial DNA gyrase as a drug target: Current state and perspectives
-
doi:10.1007/s00253-011-3557-z. PubMed: 21904817
-
Collin F, Karkare S, Maxwell A (2011) Exploiting bacterial DNA gyrase as a drug target: current state and perspectives. Appl Microbiol Biotechnol 92: 479-497. doi:10.1007/s00253-011-3557-z. PubMed: 21904817.
-
(2011)
Appl Microbiol Biotechnol
, vol.92
, pp. 479-497
-
-
Collin, F.1
Karkare, S.2
Maxwell, A.3
-
6
-
-
0035038683
-
Emerging mechanisms of fluoroquinolone resistance
-
doi:10.3201/eid0702.010239. PubMed: 11294736
-
Hooper DC (2001) Emerging mechanisms of fluoroquinolone resistance. Emerg Infect Dis 7: 337-341. doi:10.3201/eid0702.010239. PubMed: 11294736.
-
(2001)
Emerg Infect Dis
, vol.7
, pp. 337-341
-
-
Hooper, D.C.1
-
7
-
-
34548628774
-
Discovery and development of ATPase inhibitors of DNA gyrase as antibacterial agents
-
DOI 10.2174/092986707781368414
-
Oblak M, Kotnik M, Solmajer T (2007) Discovery and development of ATPase inhibitors of DNA gyrase as antibacterial agents. Curr Med Chem 14: 2033-2047. doi:10.2174/092986707781368414. PubMed: 17691945. (Pubitemid 47578161)
-
(2007)
Current Medicinal Chemistry
, vol.14
, Issue.19
, pp. 2033-2047
-
-
Oblak, M.1
Kotnik, M.2
Solmajer, T.3
-
8
-
-
84873718254
-
-
HP LambertFW O'Grady. Churchill Livingstone: Edinburgh
-
Lambert HP, O'Grady FW (1992) Coumarins; HP LambertFW O'Grady. Churchill Livingstone: Edinburgh.
-
(1992)
Coumarins
-
-
Lambert, H.P.1
O'Grady, F.W.2
-
9
-
-
84863393500
-
Pyrrolamide DNA gyrase inhibitors: Fragment-based nuclear magnetic resonance screening to identify antibacterial agents
-
doi:10.1128/AAC.05485-11. PubMed: 22183167
-
Eakin AE, Green O, Hales N, Walkup GK, Bist S et al. (2012) Pyrrolamide DNA gyrase inhibitors: Fragment-based nuclear magnetic resonance screening to identify antibacterial agents. Antimicrob Agents Chemother 56: 1240-1246. doi:10.1128/AAC.05485-11. PubMed: 22183167.
-
(2012)
Antimicrob Agents Chemother
, vol.56
, pp. 1240-1246
-
-
Eakin, A.E.1
Green, O.2
Hales, N.3
Walkup, G.K.4
Bist, S.5
-
10
-
-
51849112827
-
Novel dual-targeting benzimidazole urea inhibitors of DNA gyrase and topoisomerase IV possessing potent antibacterial activity: Intelligent design and evolution through the judicious use of structure-guided design and structure-activity relationships
-
doi:10.1021/jm800318d. PubMed: 18690678
-
Charifson PS, Grillot A-L, Grossman TH, Parsons JD, Badia M et al. (2008) Novel dual-targeting benzimidazole urea inhibitors of DNA gyrase and topoisomerase IV possessing potent antibacterial activity: Intelligent design and evolution through the judicious use of structure-guided design and structure-activity relationships. J Med Chem 51: 5243-5263. doi:10.1021/ jm800318d. PubMed: 18690678.
-
(2008)
J Med Chem
, vol.51
, pp. 5243-5263
-
-
Charifson, P.S.1
Grillot, A.-L.2
Grossman, T.H.3
Parsons, J.D.4
Badia, M.5
-
11
-
-
58549111375
-
DNA gyrase (GyrB)/topoisomerase IV (ParE) inhibitors: Synthesis and antibacterial activity
-
doi:10.1016/j.bmcl.2008.11.102. PubMed: 19095445
-
East SP, White CB, Barker O, Barker S, Bennett J et al. (2009) DNA gyrase (GyrB)/topoisomerase IV (ParE) inhibitors: Synthesis and antibacterial activity. Bioorg Med Chem Lett 19: 894-899. doi:10.1016/j.bmcl.2008.11.102. PubMed: 19095445.
-
(2009)
Bioorg Med Chem Lett
, vol.19
, pp. 894-899
-
-
East, S.P.1
White, C.B.2
Barker, O.3
Barker, S.4
Bennett, J.5
-
12
-
-
81255154494
-
Pyrrolamide DNA gyrase inhibitors: Optimization of antibacterial activity and efficacy
-
doi:10.1016/j.bmcl.2011.10.010. PubMed: 22041057
-
Sherer BA, Hull K, Green O, Basarab G, Hauck S et al. (2011) Pyrrolamide DNA gyrase inhibitors: Optimization of antibacterial activity and efficacy. Bioorg Med Chem Lett 21: 7416-7420. doi:10.1016/j.bmcl.2011.10.010. PubMed: 22041057.
-
(2011)
Bioorg Med Chem Lett
, vol.21
, pp. 7416-7420
-
-
Sherer, B.A.1
Hull, K.2
Green, O.3
Basarab, G.4
Hauck, S.5
-
13
-
-
33645791657
-
In vitro characterization of the antibacterial spectrum of novel bacterial type II topoisomerase inhibitors of the aminobenzimidazole class
-
doi:10.1128/AAC.50.4.1228-1237.2006. PubMed: 16569833
-
Mani N, Gross CH, Parsons JD, Hanzelka B, Müh U et al. (2006) In vitro characterization of the antibacterial spectrum of novel bacterial type II topoisomerase inhibitors of the aminobenzimidazole class. Antimicrob Agents Chemother 50: 1228-1237. doi:10.1128/AAC.50.4.1228-1237.2006. PubMed: 16569833.
-
(2006)
Antimicrob Agents Chemother
, vol.50
, pp. 1228-1237
-
-
Mani, N.1
Gross, C.H.2
Parsons, J.D.3
Hanzelka, B.4
Müh, U.5
-
14
-
-
1642288258
-
Novel inhibitors of DNA gyrase: 3D structure based biased needle screening, hit validation by biophysical methods, and 3D guided optimization. A promising alternative to random screening
-
DOI 10.1021/jm000017s
-
Boehm HJ, Boehringer M, Bur D, Gmuender H, Huber W et al. (2000) Novel inhibitors of DNA gyrase: 3D structure biased needle screening hit validation by biophysical methods, and 3D guided optimization. A promising alternative to random screening. J Med Chem 43: 2664-2674. doi:10.1021/jm000017s. PubMed: 10893304. (Pubitemid 30463915)
-
(2000)
Journal of Medicinal Chemistry
, vol.43
, Issue.14
, pp. 2664-2674
-
-
Boehm, H.-J.1
Boehringer, M.2
Bur, D.3
Gmuender, H.4
Huber, W.5
Klaus, W.6
Kostrewa, D.7
Kuehne, H.8
Luebbers, T.9
Meunier-Keller, N.10
Mueller, F.11
-
15
-
-
84873734502
-
Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity
-
doi:10.1016/j.bmcl.2012.11.032. PubMed: 23352267
-
Tari LW, Trzoss M, Bensen DC, Li X, Chen Z et al. (2013) Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity. Bioorg Med Chem Lett 23: 1529-1536. doi:10.1016/j.bmcl.2012.11.032. PubMed: 23352267.
-
(2013)
Bioorg Med Chem Lett
, vol.23
, pp. 1529-1536
-
-
Tari, L.W.1
Trzoss, M.2
Bensen, D.C.3
Li, X.4
Chen, Z.5
-
16
-
-
84873729257
-
Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part II: Development of inhibitors with broad spectrum, Gram-negative antibacterial activity
-
doi:10.1016/j.bmcl.2012.11.073. PubMed: 23294697
-
Trzoss M, Bensen DC, Li X, Chen Z, Lam T et al. (2013) Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part II: Development of inhibitors with broad spectrum, Gram-negative antibacterial activity. Bioorg Med Chem Lett 23: 1537-1543. doi:10.1016/j.bmcl.2012.11.073. PubMed: 23294697.
-
(2013)
Bioorg Med Chem Lett
, vol.23
, pp. 1537-1543
-
-
Trzoss, M.1
Bensen, D.C.2
Li, X.3
Chen, Z.4
Lam, T.5
-
17
-
-
2142814314
-
Crystal structures of Escherichia coli topoisomerase IV ParE subunit (24 and 43 kilodaltons): A single residue dictates differences in novobiocin potency against topoisomerase IV and DNA gyrase
-
doi:10.1128/AAC. 48.5.1856-1864.2004. PubMed: 15105144
-
Bellon S, Parsons JD, Wei Y, Hayakawa K, Swenson LL et al. (2004) Crystal structures of Escherichia coli topoisomerase IV ParE subunit (24 and 43 kilodaltons): a single residue dictates differences in novobiocin potency against topoisomerase IV and DNA gyrase. Antimicrob Agents Chemother 48: 1856-1864. doi:10.1128/AAC. 48.5.1856-1864.2004. PubMed: 15105144.
-
(2004)
Antimicrob Agents Chemother
, vol.48
, pp. 1856-1864
-
-
Bellon, S.1
Parsons, J.D.2
Wei, Y.3
Hayakawa, K.4
Swenson, L.L.5
-
18
-
-
0033985080
-
GHKL, an emergent ATPase/kinase superfamily
-
DOI 10.1016/S0968-0004(99)01503-0, PII S0968000499015030
-
Dutta R, Inouye M (2000) GHKL, an emergent ATPase/kinase superfamily. Trends Biochem Sci 25: 24-28. doi:10.1016/S0968-0004(99)01503-0. PubMed: 10637609. (Pubitemid 30060426)
-
(2000)
Trends in Biochemical Sciences
, vol.25
, Issue.1
, pp. 24-28
-
-
Dutta, R.1
Inouye, M.2
-
19
-
-
52449131735
-
Physical insights into permeation of and resistance to antibiotics in bacteria
-
doi:10.2174/138945008785747770. PubMed: 18781923
-
Ceccarelli M, Ruggerone P (2008) Physical insights into permeation of and resistance to antibiotics in bacteria. Curr Drug Targets. 9: 779-788. doi:10.2174/138945008785747770. PubMed: 18781923.
-
(2008)
Curr Drug Targets
, vol.9
, pp. 779-788
-
-
Ceccarelli, M.1
Ruggerone, P.2
-
20
-
-
0027162938
-
Penetration of lipophilic agents with multiple protonation sites into bacterial cells: Tetracyclines and fluoroquinolones as examples
-
Nikaido H, Thanassi DG (1993) Penetration of lipophilic agents with multiple protonation sites into bacterial cells: tetracyclines and fluoroquinolones as examples. Antimicrob Agents Chemother 37: 1393-1399. doi:10.1128/AAC.37.7.1393. PubMed: 8363364. (Pubitemid 23202359)
-
(1993)
Antimicrobial Agents and Chemotherapy
, vol.37
, Issue.7
, pp. 1393-1399
-
-
Nikaido, H.1
Thanassi, D.G.2
-
21
-
-
0033839497
-
The fluoroquinolone antibacterials: Past, present and future perspectives
-
DOI 10.1016/S0924-8579(00)00192-8, PII S0924857900001928
-
Appelbaum PC, Hunter PA (2000) The fluoroquinolone antibacterials: past present and future perspectives. Int Journal Antimicrob Agents. 16: 5-15. doi:10.1016/S0924-8579(00)00192-8. (Pubitemid 30665419)
-
(2000)
International Journal of Antimicrobial Agents
, vol.16
, Issue.1
, pp. 5-15
-
-
Appelbaum, P.C.1
Hunter, P.A.2
-
22
-
-
73349118457
-
Comparison of nine programs predicting pK(a) values of pharmaceutical substances
-
doi:10.1021/ci900289x. PubMed: 19961204
-
Liao CZ, Nicklaus MC (2009) Comparison of nine programs predicting pK(a) values of pharmaceutical substances. J Chem Inf Model 49: 2801-2812. doi:10.1021/ci900289x. PubMed: 19961204.
-
(2009)
J Chem Inf Model
, vol.49
, pp. 2801-2812
-
-
Liao, C.Z.1
Nicklaus, M.C.2
-
23
-
-
33846582343
-
Dual targeting of GyrB and ParE by a novel aminobenzimidazole class of antibacterial compounds
-
DOI 10.1128/AAC.00596-06
-
Grossman TH, Bartels DJ, Mullin S, Gross CH, Parsons JD et al. (2007) Dual targeting of GyrB and ParE by a novel aminobenzimidazole class of antibacterial compounds. Antimicrob Agents Chemother 51: 657-666. doi:10.1128/AAC.00596-06. PubMed: 17116675. (Pubitemid 46185287)
-
(2007)
Antimicrobial Agents and Chemotherapy
, vol.51
, Issue.2
, pp. 657-666
-
-
Grossman, T.H.1
Bartels, D.J.2
Mullin, S.3
Gross, C.H.4
Parsons, J.D.5
Liao, Y.6
Grillot, A.-L.7
Stamos, D.8
Olson, E.R.9
Charifson, P.S.10
Mani, N.11
-
25
-
-
0014454095
-
Kinetics of reversible inhibition of enzyme-catalysed reactions by tight-binding inhibitors
-
doi:10.1016/0005-2744(69)90420-3. PubMed: 4980133
-
Morrison JF (1969) Kinetics of reversible inhibition of enzyme-catalysed reactions by tight-binding inhibitors. Biochim Biophys Acta. 185: 269-286. doi:10.1016/0005-2744(69)90420-3. PubMed: 4980133.
-
(1969)
Biochim Biophys Acta
, vol.185
, pp. 269-286
-
-
Morrison, J.F.1
-
26
-
-
84884640563
-
Distinguishing on-target versus off-target activity in early antibacterial drug discovery using a macromolecular synthesis assay
-
doi:10.1177/1087057113487208. PubMed: 23686103
-
Cunningham ML, Kwan BP, Nelson KJ, Bensen DC, Shaw KJ (2013) Distinguishing on-target versus off-target activity in early antibacterial drug discovery using a macromolecular synthesis assay. J Biomol Screen 18: 1018-1026. doi:10.1177/1087057113487208. PubMed: 23686103.
-
(2013)
J Biomol Screen
, vol.18
, pp. 1018-1026
-
-
Cunningham, M.L.1
Kwan, B.P.2
Nelson, K.J.3
Bensen, D.C.4
Shaw, K.J.5
-
28
-
-
0028103275
-
The CCP4 suite: Programmes for protein crystallography
-
Collaborative Computational Project Number 4
-
Collaborative Computational Project Number 4 (1994) The CCP4 suite: programmes for protein crystallography. Acta Crystallogr D50: 760-763
-
(1994)
Acta Crystallogr
, vol.D50
, pp. 760-763
-
-
-
29
-
-
0033213239
-
The finer things in X-ray diffraction data collection
-
PubMed: 10531521
-
Pflugrath JW (1999) The finer things in X-ray diffraction data collection. Acta. Crystallogr D55: 1718-1725. PubMed: 10531521.
-
(1999)
Acta. Crystallogr
, vol.D55
, pp. 1718-1725
-
-
Pflugrath, J.W.1
-
30
-
-
34447508216
-
Phaser crystallographic software
-
DOI 10.1107/S0021889807021206, PII S0021889807021206
-
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC et al. (2007) Phaser crystallographic software. J Appl Crystallography 40: 658-674. doi:10.1107/S0021889807021206. PubMed: 19461840. (Pubitemid 47080256)
-
(2007)
Journal of Applied Crystallography
, vol.40
, Issue.4
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
31
-
-
79953763877
-
REFMAC5 for the refinement of macromolecular crystal structures
-
PubMed: 21460454
-
Murshudov GN, Skubák P, Lebedev AA, Pannu NS, Steiner RA et al. (2011) REFMAC5 for the refinement of macromolecular crystal structures. Acta Crystsllogr D67: 355-367. PubMed: 21460454.
-
(2011)
Acta Crystsllogr
, vol.D67
, pp. 355-367
-
-
Murshudov, G.N.1
Skubák, P.2
Lebedev, A.A.3
Pannu, N.S.4
Steiner, R.A.5
-
33
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
doi:10.1107/S0021889892009944
-
Laskowski RA, Macarthur MW, Moss DS, Thornton JM (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J Appl Crystallography 26: 283-291. doi:10.1107/S0021889892009944.
-
(1993)
J Appl Crystallography
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
Macarthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
34
-
-
0037441653
-
Structure validation by Calpha geometry: Phi, psi and Cbeta deviation
-
doi:10.1002/prot.10286. PubMed: 12557186
-
Lovell SC, Davis IW, Arendall WB III, de Bakker PI, Word JM et al. (2003) Structure validation by Calpha geometry: phi, psi and Cbeta deviation. Proteins. 50: 437-450. doi:10.1002/prot.10286. PubMed: 12557186.
-
(2003)
Proteins
, vol.50
, pp. 437-450
-
-
Lovell, S.C.1
Davis, I.W.2
Arendall III, W.B.3
De Bakker, P.I.4
Word, J.M.5
-
35
-
-
0037062576
-
DNA gyrase interaction with coumarin-based inhibitors: The role of the hydroxybenzoate isopentenyl moiety and the 5'-methyl group of the noviose
-
DOI 10.1021/bi0159837
-
Lafitte D, Lamour V, Tsvetkov PO, Makarov AA, Klich M et al. (2002) DNA gyrase interaction with coumarin-based inhibitors: the role of the hydroxybenzoate isopentenyl moiety and the 5'-methyl group of the noviose. Biochemistry 41: 7217-7223. doi:10.1021/bi0159837. PubMed: 12044152. (Pubitemid 34602437)
-
(2002)
Biochemistry
, vol.41
, Issue.23
, pp. 7217-7223
-
-
Lafitte, D.1
Lamour, V.2
Tsvetkov, P.O.3
Makarov, A.A.4
Klich, M.5
Deprez, P.6
Moras, D.7
Briand, C.8
Gilli, R.9
-
36
-
-
79951996670
-
Assessing the performance of the molecular mechanics/Poisson Boltzmann surface area and molecular mechanics/generalized Born surface area methods. II. The accuracy of ranking poses generated from docking
-
doi:10.1002/jcc.21666. PubMed: 20949517
-
Hou T, Wang J, Li Y, Wang W (2011) Assessing the performance of the molecular mechanics/Poisson Boltzmann surface area and molecular mechanics/generalized Born surface area methods. II. The accuracy of ranking poses generated from docking. J Comput Chem 32: 866-873. doi:10.1002/jcc.21666. PubMed: 20949517.
-
(2011)
J Comput Chem
, vol.32
, pp. 866-873
-
-
Hou, T.1
Wang, J.2
Li, Y.3
Wang, W.4
-
37
-
-
12144289984
-
Glide: A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy
-
DOI 10.1021/jm0306430
-
Friesner RA, Banks JL, Murphy RB, Halgren TA, Klicic JJ et al. (2004) Glide: A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy. J Med Chem 47: 1739-1749. doi:10.1021/jm0306430. PubMed: 15027865. (Pubitemid 38380917)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.7
, pp. 1739-1749
-
-
Friesner, R.A.1
Banks, J.L.2
Murphy, R.B.3
Halgren, T.A.4
Klicic, J.J.5
Mainz, D.T.6
Repasky, M.P.7
Knoll, E.H.8
Shelley, M.9
Perry, J.K.10
Shaw, D.E.11
Francis, P.12
Shenkin, P.S.13
-
38
-
-
84893486576
-
-
Schrodinger New York, NY (2011)
-
Schrodinger (New York, NY (2011).
-
-
-
-
39
-
-
84893495435
-
-
Case DA, Darden TA, Cheatham III, Simmerling J et al. (University of California - San Francisco, 2008)
-
Case DA, Darden TA, Cheatham III, Simmerling J et al. (University of California - San Francisco, 2008).
-
-
-
-
40
-
-
70349932423
-
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
-
doi:10.1002/jcc.21256. PubMed: 19399780
-
Morris GM, Huey R, Lindstrom W, Sanner MF, Belew RK et al. (2009) AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility. J Comput Chem 30: 2785-2791. doi:10.1002/jcc.21256. PubMed: 19399780.
-
(2009)
J Comput Chem
, vol.30
, pp. 2785-2791
-
-
Morris, G.M.1
Huey, R.2
Lindstrom, W.3
Sanner, M.F.4
Belew, R.K.5
-
41
-
-
84893440225
-
-
A. S. Inc. (Accelrys Software Inc., San Diego, CA, 2012)
-
A. S. Inc. (Accelrys Software Inc., San Diego, CA, 2012).
-
-
-
|